mRNA_Ecto-sp13_S_contig985.21491.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig985.21491.1
Unique NamemRNA_Ecto-sp13_S_contig985.21491.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig985.21491.1 vs. uniprot
Match: A0A6H5JZM6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZM6_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 2.630e-36
Identity = 110/248 (44.35%), Postives = 138/248 (55.65%), Query Frame = 1 
Query:  289 QQTLENPNFAGELPTSDDVPPAESQLAPPPVAEPRDPP--SGGHVENKGFAPPNVHCTATTPPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSSTRSRIQRVVDNHPDLLAEGSISELPPHIMTLMHRLFDTARQNQGRTQLLRSAPSSGGDPSTTPRSTPRNDNNRGG-GNSSRSAPRERSRCSHPSCKKPLGHTTDTCFQRKREKVQATKNHRENTRPVAKRSCAEDRIPR-KDQNNDD 1020
            Q +L N    GELPT  D P    +L+ PPVAE RD P  SGGHVE KGF PP+          +      XXXXXX                     ++ST S+IQ VVD H DL+ +G + +LP H++ LM R+F+  RQN+GRT   +S  S            PR+  +RG  GNS R   +ER RC+HP+C KPLGHTT TCFQ+KRE+    +N R N +P AKR CAEDR PR KD + DD
Sbjct:   10 QLSLSNLANNGELPT--DQP---GELSVPPVAEARDTPPTSGGHVEAKGFDPPSPXXX------NVQDLVIXXXXXXSVASTAAPSVGAPSASSSSTDLTSTLSKIQSVVDRHLDLVTDGRLEQLPDHVVQLMDRMFEHHRQNRGRTPAFQSGSSXXXXXXXXXXXAPRHGTHRGXXGNSRRPVRKERPRCTHPTCDKPLGHTTATCFQKKREEAATERNRRRN-QPTAKRPCAEDRTPRSKDASTDD 245
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig985.21491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZM6_9PHAE2.630e-3644.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig985contigEcto-sp13_S_contig985:10263..13169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1029
Hectar predicted targeting categoryother localisation
Exons2
Cds size780
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464247.237135-UTR-Ecto-sp13_S_contig985:10262..105111681464247.237135-UTR-Ecto-sp13_S_contig985:10262..10511Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig985 10263..10511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464247.2482853-CDS-Ecto-sp13_S_contig985:10511..109521681464247.2482853-CDS-Ecto-sp13_S_contig985:10511..10952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig985 10512..10952 +
1681464247.2673583-CDS-Ecto-sp13_S_contig985:12830..131691681464247.2673583-CDS-Ecto-sp13_S_contig985:12830..13169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig985 12831..13169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig985.21491.1prot_Ecto-sp13_S_contig985.21491.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig985 10512..13169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig985.21491.1

>prot_Ecto-sp13_S_contig985.21491.1 ID=prot_Ecto-sp13_S_contig985.21491.1|Name=mRNA_Ecto-sp13_S_contig985.21491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
MSFELTEQQLLEEQQTLENPNFAGELPTSDDVPPAESQLAPPPVAEPRDP
PSGGHVENKGFAPPNVHCTATTPPPSPTPSATPAPSPSVTSSATPSAGAP
SIAPSASTNMSSTRSRIQRVVDNHPDLLAEGSISELPPHIMTLMHRLFDT
ARQNQGRTQLLRSAPSSGGDPSTTPRSTPRNDNNRGGGNSSRSAPRERSR
CSHPSCKKPLGHTTDTCFQRKREKVQATKNHRENTRPVAKRSCAEDRIPR
KDQNNDDSDA
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mRNA from alignment at Ecto-sp13_S_contig985:10263..13169+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig985.21491.1 ID=mRNA_Ecto-sp13_S_contig985.21491.1|Name=mRNA_Ecto-sp13_S_contig985.21491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2907bp|location=Sequence derived from alignment at Ecto-sp13_S_contig985:10263..13169+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCCTCTTCAACCCTCCTCTGTCACTCTTATTCTTCCCCTCTCTTCCCA
GAGACCACACCGTTCGCTCTTCCTAGAGATATACTTCTGTCCAGCAAATC
TGGACACTAGCGGCTTCCCACCGTCGCTCTGGAAGTCTCCTCTGGTCGTA
TAGTCGGGAGAAGGTTCAACCCCTTCCGTCGGTCTGAGATAGGTCACCCT
TGTCTGGCGTCAGCGAGCAGGTTTCCATCTGTACCGTCCTATCTCGACCA
TGTCTTTCGAGCTCACCGAGCAGCAGCTCCTCGAGGAACAACAAACGCTT
GAGAACCCCAACTTCGCCGGAGAACTCCCTACCTCCGACGACGTCCCGCC
GGCGGAGTCACAACTCGCTCCCCCCCCTGTCGCCGAACCACGCGACCCTC
CTTCCGGCGGCCACGTCGAGAATAAAGGGTTCGCCCCACCGAATGTCCAC
TGTACAGCGACCACCCCTCCACCGTCCCCTACCCCGTCCGCGACTCCAGC
GCCATCCCCGTCCGTGACTTCATCCGCCACGCCGTCCGCTGGTGCTCCAT
CGATCGCGCCGTCCGCATCCACCAACATGTCCAGTACGAGAAGCCGGATC
CAGCGGGTGGTCGACAACCATCCAGATCTCCTGGCTGAGGGGAGCATCTC
GGAACTACCCCCACACATCATGACCCTGATGCACCGGCTGGTAAGCTTGC
AGGAGGCCAACACGGCAGCTGAGCGTGTGTCCCAGTCTGTCTTGTCTGTC
GACGCTATGTCGCACGCCCCGTCTGTCCCGGGTTTGACTAGGTCATTTGC
CGCTGCGTTGGCACGCCAAATACATGTCGTGTTGGGCCCCACCGATGTCA
AACAACCCCCCCGCCTCAATGGCAAGAGCGAGGTTGATGTCACTTCCGTC
CTGTCCCAGTTCCGCTTGATCGCTGGCAGCGCAACGCTGCAAAAAAAGAT
GCATTTCTGCAACTTTTCTTGCAGCTTTGCACATGTACGCTCAGTATGGG
AGCTAAAAGTTGCGCAAAAAGTTCTGCAACTTTTTTTCCGGAGCGAAAAG
CTGCAGTTTGGCCGAAAAGTTTTTCAGCTTTTCTCGAGTCGGGAAGGGGC
GAGAAAAGCTGCACGGCGGAAACTATACTGGTTCACGTCAAGCTGCTACC
CCTACCGCACACGCAGACCCTCTCCAGCATCGATTGTGGGAAGACTGTGA
TCACCGACATCTCGACAAAAACTTTACGAGTTGCCTCATGAATGGTACCT
GGAAGGAGGTGATGCCATGGGCTGATGGGCAATGCCAAGGTTTGCGGCCG
TGAGGTGCAGAATGTGCCGGGAAAAAAAGTTTGTGCCGTCAACGGCCGCT
AGCGGTTGGTTCAAGCTCGACGTTTTTGACCGCCACGGGTTTGGTTATCC
ACCGATAACTTTCCGAACGAGGAAGCAACAGCAATAGTAAGGCCGCTCGG
TGGGAGGTAGCTCTGTGCTTCATCTCTCATGCCCAAGGTTTGGTGCCGTG
GGGTATCGTGCGCATCGGGAAACAAGTTTTGATCGTACCCACGTCAGAGA
TCAGTTGGTTCTAGTTCGAAGGGATTGTGTGCGCATCGTTTGGTTTTCCA
GCGACAACTTTTCGAAGGAGAAGGCAACAGCAACAGCAATGCCACCCCGA
GGGAGCTGGCTACGCCCAGCATCTTTCTGGTACGAGGTTAGATGCCTTGG
GGTATCGTAAGTGTGGAGAAAAAATGTTGCAACTACACTCTCCCGCACGC
TCTTTAACCGGTTCTTCTTTGGCGGTGCAATATGAAGAGCGCGTGCCTTC
TCTCCGTTGCTGAAAAAAAGAAGATCACGCCTCCGCATGCCGCCGGTCCC
GTACACAAAACTTTTCTTCGTCCCACAAAGAGCATGCATCAAAAGTTCCG
TTGACAAAGTTTGAAGGAAAAGCTGCCGGAAAAGTTTGCAGCTTTTCTTG
CAGCATTGTGCCGCCATAAAAAGCGGTGTAACCCCACCATCATCTCTGTC
TCCGGACTCGAAAAACGCGGTGATGCGGTCGCGTTCGAATCGTTCTCCCT
CATCTGCGACGGTCCCGTGTTGCAGATGTATCAAGAGATGATGTCGGGTA
AGATCGATTGTTCCTGCGCCGCTGTCTCTCACGGGACTGTACAACAAGCA
AACTCTTACCCCCCGCCTGCCACATGGGTAGAGCTCGAAATAGCTCTCCT
ACACCGTCTCATGCCCTCCAACATAGTCGAGGAGAATGCACTTCACCTTG
TCAACCTTCGTCGAGCAGGCAATGACAACCTTAGCTCGTATGCCCTTCGT
TTTCAAACAGATTGCACTCGGTTTGAACAAGCTGTCGAACGAATCACTCC
GGGTCGCTCGCCGTATCAAGCGCTCGTGGTAATTCTGTTTCAAAACGGCC
TTGTCCCGAACATTCGGTCCAATGCGCTAGACAAAAACCTGTCAAAGCCC
TTCGGGATGTTATCGATCGCGCTCGCCGTACCGAGTCAGCGAATCTGTCT
GATGAAACCCCCGCTGTCAGCGCTGTTTCGCTCACCCTGTCATGTCTCGC
GCCCGTCTGTCTCAAAAGTTTGACACCGCGCGGCAGAACCAGGGCCGCAC
CCAGTTACTCAGGTCGGCACCCTCGTCAGGTGGTGATCCGTCCACCACTC
CCAGGAGCACGCCACGCAACGACAACAACCGCGGCGGTGGCAACTCCTCC
CGCTCCGCCCCGAGGGAGCGCTCGCGGTGCTCGCACCCGTCGTGCAAGAA
ACCCCTCGGGCACACGACGGACACGTGTTTCCAACGGAAGCGCGAAAAAG
TCCAGGCGACCAAGAACCACCGCGAGAACACTCGCCCGGTGGCGAAAAGG
TCGTGTGCAGAGGATCGAATTCCTCGCAAAGACCAGAACAACGACGATAG
CGACGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig985:10263..13169+

>mRNA_Ecto-sp13_S_contig985.21491.1 ID=mRNA_Ecto-sp13_S_contig985.21491.1|Name=mRNA_Ecto-sp13_S_contig985.21491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig985:10263..13169+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTTTCGAGCTCACCGAGCAGCAGCTCCTCGAGGAACAACAAACGCT
TGAGAACCCCAACTTCGCCGGAGAACTCCCTACCTCCGACGACGTCCCGC
CGGCGGAGTCACAACTCGCTCCCCCCCCTGTCGCCGAACCACGCGACCCT
CCTTCCGGCGGCCACGTCGAGAATAAAGGGTTCGCCCCACCGAATGTCCA
CTGTACAGCGACCACCCCTCCACCGTCCCCTACCCCGTCCGCGACTCCAG
CGCCATCCCCGTCCGTGACTTCATCCGCCACGCCGTCCGCTGGTGCTCCA
TCGATCGCGCCGTCCGCATCCACCAACATGTCCAGTACGAGAAGCCGGAT
CCAGCGGGTGGTCGACAACCATCCAGATCTCCTGGCTGAGGGGAGCATCT
CGGAACTACCCCCACACATCATGACCCTGATGCACCGGCTGTTTGACACC
GCGCGGCAGAACCAGGGCCGCACCCAGTTACTCAGGTCGGCACCCTCGTC
AGGTGGTGATCCGTCCACCACTCCCAGGAGCACGCCACGCAACGACAACA
ACCGCGGCGGTGGCAACTCCTCCCGCTCCGCCCCGAGGGAGCGCTCGCGG
TGCTCGCACCCGTCGTGCAAGAAACCCCTCGGGCACACGACGGACACGTG
TTTCCAACGGAAGCGCGAAAAAGTCCAGGCGACCAAGAACCACCGCGAGA
ACACTCGCCCGGTGGCGAAAAGGTCGTGTGCAGAGGATCGAATTCCTCGC
AAAGACCAGAACAACGACGATAGCGACGCG
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