mRNA_Ecto-sp13_S_contig126.2148.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig126.2148.1
Unique NamemRNA_Ecto-sp13_S_contig126.2148.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig126.2148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig126contigEcto-sp13_S_contig126:16235..19046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2463
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_006890.1
Cds size1947
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462672.2490194-UTR-Ecto-sp13_S_contig126:16234..164861681462672.2490194-UTR-Ecto-sp13_S_contig126:16234..16486Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig126 16235..16486 +
1681462672.2802923-UTR-Ecto-sp13_S_contig126:18782..190461681462672.2802923-UTR-Ecto-sp13_S_contig126:18782..19046Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig126 18783..19046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462672.263808-CDS-Ecto-sp13_S_contig126:16486..172451681462672.263808-CDS-Ecto-sp13_S_contig126:16486..17245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig126 16487..17245 +
1681462672.2722363-CDS-Ecto-sp13_S_contig126:17594..187821681462672.2722363-CDS-Ecto-sp13_S_contig126:17594..18782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig126 17595..18782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig126.2148.1prot_Ecto-sp13_S_contig126.2148.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig126 16487..18782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig126.2148.1

>prot_Ecto-sp13_S_contig126.2148.1 ID=prot_Ecto-sp13_S_contig126.2148.1|Name=mRNA_Ecto-sp13_S_contig126.2148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=649bp
MQLELEHLQRQYKWRVLLSDAEHLLSRPINTKLAQDDSNIGLLPSATPRL
HRGLTLAQQQPHPQYQQQHQEEQQQLQRDSAANLARKLLFFQHQEQPRSR
SPSPPLLATQCDPELCVVGESMTSASSPTKGASPSPSGALSSPKRMETSG
RMTPPLANEGGADAKPVDRGRMPQPQAKCRPSPETGDGPVVRREDNPQQP
PGCQTTSSSFSDSSPNIYPSENGSSSSTDEPPTQGNPPPNGGSSSTLTFE
DEEINALEKPSRISNEGASVSFSVSAEAPAAAAATAAASFTPQPNEGRQS
HSEGSGSGGGRPILGKTSSSTSPLLSIPIPTAIAAGSPQPGITKRNDNMV
GTGPDPVSYEDKQGVHRERQRGQNHQSQTESNNCQSPFRAGAGAGTGTSA
NTLETATEPASFQSVMLATEWMETEWKPLAVSRGSTRPLVQIVSYNRPST
TVTGLQPIHPLPVFSDGNETPLRMVGAKIFRDGATPANAAATIATTDHTP
SSPSAGRLQGGNVSGPTWEGGGAGRGGAERGLGGEGVSSPTPTLLSFPNN
HADGNGSESPFLLTTGGSSTCRNGVHSGIGRRLKGRRERGNRQSAVRAGK
SDATIVVEEEDVGDKRKQSGRYSQSPPPSPTAWTPPTGTRSLFSGGEV*
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mRNA from alignment at Ecto-sp13_S_contig126:16235..19046+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig126.2148.1 ID=mRNA_Ecto-sp13_S_contig126.2148.1|Name=mRNA_Ecto-sp13_S_contig126.2148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2812bp|location=Sequence derived from alignment at Ecto-sp13_S_contig126:16235..19046+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCACAGGCCGGTCTTCGAGGCAATGTAACGCCGCCGATCAGCAGCACCG
GCAGCTGTTGGAACAGCGGCTGCTGCGGCCTGCACGTGCTGCACCGGGAA
GCGGCGGTACGGTAGCGGATAGTGGAGGCTGCCGTATCTTGCCAAGTTTG
AAGGACGGCGTAGCACCACCCTCATCATCGACGGCGCCATTGGCCTCATC
GCAAAAACAGAGAGCGCAACTCCAACATTTCGAGCTGCAGCGAAAGACCC
AGATGCAGCTGGAGCTGGAGCACCTTCAACGACAATATAAATGGCGAGTG
CTTCTGAGCGACGCCGAACACTTGTTATCACGGCCGATAAACACCAAACT
CGCCCAAGATGACAGCAACATCGGGCTGCTCCCCTCAGCAACCCCACGGC
TTCACCGTGGCCTCACCCTCGCCCAACAACAACCACATCCGCAGTATCAG
CAGCAACATCAGGAAGAACAACAACAACTACAGCGAGACTCAGCAGCCAA
CCTTGCACGGAAATTGCTTTTCTTCCAACACCAGGAGCAGCCGCGTTCGC
GATCACCATCACCGCCGTTGTTGGCGACACAATGTGATCCCGAGTTGTGC
GTGGTGGGCGAATCGATGACATCGGCGTCGTCTCCCACGAAGGGTGCGTC
GCCATCACCGTCAGGCGCTTTGTCGTCACCAAAGCGGATGGAGACATCGG
GACGAATGACGCCTCCCCTCGCCAATGAGGGTGGCGCCGACGCAAAACCT
GTTGACCGAGGAAGAATGCCGCAACCGCAAGCCAAATGCCGGCCGTCCCC
AGAGACAGGGGATGGCCCGGTGGTGCGACGGGAAGACAACCCTCAACAAC
CTCCGGGATGCCAGACCACCTCCTCATCTTTTTCGGACTCTTCGCCAAAC
ATTTACCCCTCGGAAAATGGGAGCTCATCATCGACTGATGAACCTCCAAC
CCAGGGGAACCCACCTCCAAACGGGGGTTCTTCGTCGACACTTACTTTCG
AAGATGAAGAGGTGACGAAATCAAATCGACACCGCCCGAAATGTTGTAGA
GGGCGTGATGCTTGCAGCTACTATTCTGCGCACTTCGAATCAGATTCGTG
ACCACGCGGACAGAAATTTTGGCTCGTATCGTCTTCTTCTTCATACTGCT
CGTCCGCAACGAGTGCAAAACGTCTATCGTAAGTCGTTGGACCAATTTTT
CGTACTGAGTTTGATGATACTCTACGATGCACCATGTGCTCATGAGGGCA
AGAGTAGGACACAAACCTCGTCACTCCGTTCACCGGCCCGCGTGTAGCGC
GTATCGATACTGTTTGTTGTTGTCGCTCACGCGTACACACCGTCTATCCT
CGTATGGCAGATCAACGCGTTGGAGAAGCCGTCACGGATTTCGAACGAAG
GCGCCTCCGTTTCGTTCTCCGTATCGGCAGAAGCACCAGCTGCAGCAGCA
GCAACGGCGGCAGCTTCTTTCACCCCACAACCAAACGAAGGTCGACAATC
CCATTCCGAGGGCAGCGGAAGTGGTGGAGGGCGGCCCATACTCGGCAAGA
CTTCATCCTCGACGTCGCCACTCCTGTCGATTCCGATACCCACGGCGATC
GCCGCAGGCTCGCCTCAGCCTGGAATCACGAAGAGGAACGACAATATGGT
CGGGACCGGCCCCGACCCTGTGTCCTACGAAGACAAGCAGGGAGTGCACC
GGGAGCGGCAGCGGGGCCAGAACCATCAAAGCCAGACCGAGAGCAATAAC
TGTCAGTCGCCCTTTCGTGCTGGTGCTGGTGCTGGAACGGGTACCTCGGC
CAATACACTGGAAACAGCAACAGAGCCGGCATCGTTCCAGTCGGTAATGC
TGGCGACGGAATGGATGGAGACGGAATGGAAGCCGCTTGCTGTGTCACGG
GGAAGCACCAGACCACTTGTACAAATTGTCTCATACAACAGGCCGTCGAC
GACGGTCACAGGGCTGCAGCCGATTCACCCTCTTCCGGTATTCTCCGACG
GCAACGAGACACCGCTCCGCATGGTCGGAGCCAAGATATTCCGGGATGGT
GCAACGCCTGCCAATGCTGCCGCTACCATTGCTACTACGGACCACACACC
ATCGTCGCCATCTGCAGGACGTTTGCAGGGGGGGAATGTGAGTGGGCCAA
CGTGGGAAGGGGGCGGGGCGGGAAGAGGAGGGGCGGAACGAGGACTAGGA
GGGGAAGGAGTCTCATCGCCAACACCGACCCTATTATCGTTCCCGAACAA
CCACGCCGACGGCAATGGCAGCGAAAGCCCTTTCTTACTCACCACTGGCG
GTAGTAGCACATGCAGAAATGGCGTGCACAGCGGCATCGGGAGGAGACTG
AAGGGTCGCCGCGAAAGAGGAAACCGGCAGAGCGCGGTTCGTGCCGGGAA
GAGTGACGCAACAATAGTGGTCGAGGAGGAAGACGTAGGTGACAAACGGA
AGCAGTCGGGCCGATATTCCCAGTCTCCCCCGCCAAGCCCTACCGCGTGG
ACTCCGCCCACTGGTACACGGTCACTTTTTTCGGGGGGAGAAGTTTGAGG
TTAGTTTTCGGCAGTTTTCGTACCCATACGGAGAAGTAGGTTGATCGTCC
TATTTCTGGGCGAACAGGGCCAAATGTGTCACGGCTATTATTCAGGCGTG
CCGTGCTTCGTGCGACGTAGCGCATGAAGATACAAACTGCATTAGCTGAG
AACTAGAAGGCGTTAGGTAGGTTTTCAACATTGGAGGATAGTGTTGTATG
GGAGATAGAAATCTTGGTTTTATCACATTGGCATGGAAGAAACAGAAGCA
ATTGTATTCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig126:16235..19046+

>mRNA_Ecto-sp13_S_contig126.2148.1 ID=mRNA_Ecto-sp13_S_contig126.2148.1|Name=mRNA_Ecto-sp13_S_contig126.2148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1947bp|location=Sequence derived from alignment at Ecto-sp13_S_contig126:16235..19046+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCTGGAGCTGGAGCACCTTCAACGACAATATAAATGGCGAGTGCT
TCTGAGCGACGCCGAACACTTGTTATCACGGCCGATAAACACCAAACTCG
CCCAAGATGACAGCAACATCGGGCTGCTCCCCTCAGCAACCCCACGGCTT
CACCGTGGCCTCACCCTCGCCCAACAACAACCACATCCGCAGTATCAGCA
GCAACATCAGGAAGAACAACAACAACTACAGCGAGACTCAGCAGCCAACC
TTGCACGGAAATTGCTTTTCTTCCAACACCAGGAGCAGCCGCGTTCGCGA
TCACCATCACCGCCGTTGTTGGCGACACAATGTGATCCCGAGTTGTGCGT
GGTGGGCGAATCGATGACATCGGCGTCGTCTCCCACGAAGGGTGCGTCGC
CATCACCGTCAGGCGCTTTGTCGTCACCAAAGCGGATGGAGACATCGGGA
CGAATGACGCCTCCCCTCGCCAATGAGGGTGGCGCCGACGCAAAACCTGT
TGACCGAGGAAGAATGCCGCAACCGCAAGCCAAATGCCGGCCGTCCCCAG
AGACAGGGGATGGCCCGGTGGTGCGACGGGAAGACAACCCTCAACAACCT
CCGGGATGCCAGACCACCTCCTCATCTTTTTCGGACTCTTCGCCAAACAT
TTACCCCTCGGAAAATGGGAGCTCATCATCGACTGATGAACCTCCAACCC
AGGGGAACCCACCTCCAAACGGGGGTTCTTCGTCGACACTTACTTTCGAA
GATGAAGAGATCAACGCGTTGGAGAAGCCGTCACGGATTTCGAACGAAGG
CGCCTCCGTTTCGTTCTCCGTATCGGCAGAAGCACCAGCTGCAGCAGCAG
CAACGGCGGCAGCTTCTTTCACCCCACAACCAAACGAAGGTCGACAATCC
CATTCCGAGGGCAGCGGAAGTGGTGGAGGGCGGCCCATACTCGGCAAGAC
TTCATCCTCGACGTCGCCACTCCTGTCGATTCCGATACCCACGGCGATCG
CCGCAGGCTCGCCTCAGCCTGGAATCACGAAGAGGAACGACAATATGGTC
GGGACCGGCCCCGACCCTGTGTCCTACGAAGACAAGCAGGGAGTGCACCG
GGAGCGGCAGCGGGGCCAGAACCATCAAAGCCAGACCGAGAGCAATAACT
GTCAGTCGCCCTTTCGTGCTGGTGCTGGTGCTGGAACGGGTACCTCGGCC
AATACACTGGAAACAGCAACAGAGCCGGCATCGTTCCAGTCGGTAATGCT
GGCGACGGAATGGATGGAGACGGAATGGAAGCCGCTTGCTGTGTCACGGG
GAAGCACCAGACCACTTGTACAAATTGTCTCATACAACAGGCCGTCGACG
ACGGTCACAGGGCTGCAGCCGATTCACCCTCTTCCGGTATTCTCCGACGG
CAACGAGACACCGCTCCGCATGGTCGGAGCCAAGATATTCCGGGATGGTG
CAACGCCTGCCAATGCTGCCGCTACCATTGCTACTACGGACCACACACCA
TCGTCGCCATCTGCAGGACGTTTGCAGGGGGGGAATGTGAGTGGGCCAAC
GTGGGAAGGGGGCGGGGCGGGAAGAGGAGGGGCGGAACGAGGACTAGGAG
GGGAAGGAGTCTCATCGCCAACACCGACCCTATTATCGTTCCCGAACAAC
CACGCCGACGGCAATGGCAGCGAAAGCCCTTTCTTACTCACCACTGGCGG
TAGTAGCACATGCAGAAATGGCGTGCACAGCGGCATCGGGAGGAGACTGA
AGGGTCGCCGCGAAAGAGGAAACCGGCAGAGCGCGGTTCGTGCCGGGAAG
AGTGACGCAACAATAGTGGTCGAGGAGGAAGACGTAGGTGACAAACGGAA
GCAGTCGGGCCGATATTCCCAGTCTCCCCCGCCAAGCCCTACCGCGTGGA
CTCCGCCCACTGGTACACGGTCACTTTTTTCGGGGGGAGAAGTTTGA
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