mRNA_Ecto-sp13_S_contig9840.21487.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig9840.21487.1
Unique Name	mRNA_Ecto-sp13_S_contig9840.21487.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A6H5LBS4_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBS4_9PHAE)

HSP 1 Score: 595 bits (1533), Expect = 1.870e-206
Identity = 307/341 (90.03%), Postives = 317/341 (92.96%), Query Frame = 3

Query:  222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSRSTYADQIKELHKLKAKTADDVAAESPVIAXXXXXXSDDLDPGTTGSESPSGKISSTKREAEVIAQVSGEKRGRIGAISETTAMTAPSSPRLRSVGGAPAEGGGDPTPSPANARGASEVEGDXXXXXXXESREDDLGREDDILSFVAVAIALAIVGILVRKALRLAEVI 1244
            MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEF+GGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPE+WQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCG+VADLLPELRPKGES GASSRS YADQIKELHKLKAKTAD+VAAESPV A  XXXXSDD DPGTTGSESPSGKI STK+EAEVIAQ SG+K G IGAIS+TTA TAPSSPRLRSVGG PAEG G PTP+ ANARG SEVEGD       ESRE+ LGREDD+LSFVAVAIALAIVGILVRKALRLAEVI
Sbjct:    1 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFQGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEYWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGVVADLLPELRPKGESGGASSRSIYADQIKELHKLKAKTADEVAAESPVTAAAXXXXSDDRDPGTTGSESPSGKIGSTKKEAEVIAQASGKKCGGIGAISKTTATTAPSSPRLRSVGGGPAEGRGGPTPAHANARGTSEVEGDGGQQQKQESREEYLGREDDVLSFVAVAIALAIVGILVRKALRLAEVI 341

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BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: I2CR53_NANGC (Ubiquitin-conjugating enzyme E2 J1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CR53_NANGC)

HSP 1 Score: 271 bits (693), Expect = 1.590e-80
Identity = 124/198 (62.63%), Postives = 149/198 (75.25%), Query Frame = 3

Query:  231 NIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPK-GESSGASS----------------RSTYADQIKELH 773
            N+KNPAI+RIHAD+REL KDPSDQYHAAPLE NLFEWHFT+RGPP T+++ GVYHGRI+LP EYPF+PP+IM  TP+GRF  G KICL+IS++HPEHWQPAWG+RLILEALISFFP+   GA+G LDW+  ERKRLAVESR W C +CGL+  LLP L    GE SG                   + TYA+ + +L+
Sbjct:    9 NVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDAGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWGVRLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESRSWCCARCGLIKTLLPPLNTAVGEESGKEGXXXXXXXXXXXENNGGKRTYAEAVSQLY 206

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BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A8K1CP11_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP11_PYTOL)

HSP 1 Score: 264 bits (674), Expect = 2.290e-78
Identity = 127/203 (62.56%), Postives = 157/203 (77.34%), Query Frame = 3

Query:  222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSRSTYADQIKELH--KLKAK---TADDVAAES 815
            M  +++N AIKRI  DVRE+MKDPSDQY+AAPLE N+F+WHFT+RGPPDTEFEGG+YHGRI+LP +YPF+PP+IM  TPNGRF    KICL+IS++HPE WQPAWGIRLILEALISF P+   GA+G +D+   ERKRLA  S  + C  CG VA+LLPEL+ + E + AS  S YADQI +LH   L++K   +A+D A ES
Sbjct:    1 MASSVRNTAIKRIQGDVREMMKDPSDQYYAAPLEDNMFDWHFTLRGPPDTEFEGGIYHGRILLPADYPFKPPNIMLLTPNGRFEVRKKICLSISAHHPEEWQPAWGIRLILEALISFMPTKGEGAIGAIDYPPEERKRLAKLSCDYTCDVCGKVAELLPELKEEDEEN-ASKPSKYADQIAQLHMHSLESKPATSAEDTAQES 202

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BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: V9E9I6_PHYPR (UBC core domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=V9E9I6_PHYPR)

HSP 1 Score: 259 bits (663), Expect = 1.300e-76
Identity = 119/191 (62.30%), Postives = 145/191 (75.92%), Query Frame = 3

Query:  222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSRSTYADQIKELHKLKAKTA 794
            M  +++N AIKRI  DVRE+M +PSDQY AAPLE+N+F+WHFT+RGP DTEFEGG+YHGRIILP +YPF+PP+IM  TPNGRF    KICL+IS+YHPE WQPAWG+RLILEALISF P+   GA+G LD+ A ER+RLA  S  +KC  CG VADLLPEL  + E       S YA+QI +LH    ++A
Sbjct:    1 MAASVRNTAIKRIQGDVREMMTNPSDQYAAAPLETNMFDWHFTLRGPRDTEFEGGIYHGRIILPSDYPFKPPNIMLLTPNGRFEVKKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFPAEERRRLAKLSVDYKCETCGRVADLLPELESENEEETEKKPSKYAEQIAQLHMHSLESA 191

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BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A484EG94_BRELC (UBC core domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EG94_BRELC)

HSP 1 Score: 260 bits (664), Expect = 2.140e-76
Identity = 119/185 (64.32%), Postives = 144/185 (77.84%), Query Frame = 3

Query:  222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSR-STYADQIKELH 773
            M   ++N AIKRI  DVRE+M +PSDQY AAPLE+N+F+WHFT+RGPPD+EFEGG+YHGRIILP +YPF+PP+IM  TPNGRF    KICL+IS+YHPE WQPAWG+RLILEALISF P+   GA+G LD+SA ER+RLA  S  +KC  CG VADLLPEL+   E      + S YA+QI +LH
Sbjct:    1 MVAGVRNTAIKRIQGDVREMMTNPSDQYDAAPLETNMFDWHFTLRGPPDSEFEGGIYHGRIILPSDYPFKPPNIMLLTPNGRFEVKKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFSAAERRRLAKLSVDFKCETCGRVADLLPELKAGNEEKEVEKKPSKYAEQIAQLH 185

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BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A6G0XT22_9STRA (UBC core domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XT22_9STRA)

HSP 1 Score: 257 bits (657), Expect = 6.050e-76
Identity = 123/198 (62.12%), Postives = 145/198 (73.23%), Query Frame = 3

Query:  222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSRSTYADQIKELHKLKAKTADDVAAES 815
            M  +I N AIKRI ADVRE+M DPSDQY A PLE N+F+WHFTIRGP DT FEGGVYHGRI+LP +YPF+PP+I+  TPNGRF    KICL+IS+YHPEHWQPAWG+RLILEALISF P+   GA+G LD++A ERK LA ES  W C +CG V DL+PE +P+     A   S YA QI +LH    + A D A  S
Sbjct:    1 MSGSIGNTAIKRIRADVREMMTDPSDQYFATPLEDNMFDWHFTIRGPRDTPFEGGVYHGRILLPADYPFKPPNIILLTPNGRFEVKKKICLSISAYHPEHWQPAWGVRLILEALISFMPTKGEGAIGALDFTADERKALAKESVNWSCPQCGSVKDLIPEEKPRDT---APVESKYASQIAQLHIHNMEAAPDNADSS 195

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BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A0P1B4T1_PLAHL (Ubiquitin-conjugating enzyme n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B4T1_PLAHL)

HSP 1 Score: 258 bits (659), Expect = 6.560e-76
Identity = 122/197 (61.93%), Postives = 147/197 (74.62%), Query Frame = 3

Query:  222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSR-STYADQIKELHKLKAKTADDVAA 809
            M   ++N AIKRI  DVRE+M +PSDQY AAPL++N+F+WHFT+RGP DTEFEGGVYHGRIILP +YPF+PP+IM  TPNGRF    KICL+IS+YHPE WQPAWG+RLILEALISF P+   GA+G LD+SA ERKRLA  S  + C  CG V DLLPELR       A+ + S YA+QI +LH    ++A  V A
Sbjct:    1 MSAGVRNTAIKRIQGDVREMMTNPSDQYAAAPLDTNMFDWHFTLRGPRDTEFEGGVYHGRIILPSDYPFKPPNIMLLTPNGRFEVRKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFSAAERKRLAKLSIDYTCETCGRVLDLLPELRATNADEDAAKKPSKYAEQIAQLHMHSLESAPPVTA 197

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BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A329S705_9STRA (UBC core domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S705_9STRA)

HSP 1 Score: 258 bits (659), Expect = 6.980e-76
Identity = 149/348 (42.82%), Postives = 205/348 (58.91%), Query Frame = 3

Query:  222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSR-STYADQIKELHKLKAKTADDVAA--ESPVIAXXXXXXSDDLDPGTTGSESPSGKISSTKREAEVIAQVSGEKRGRIGAISETTAMTAPSSPRLRSVGGA----PAEGGGDPTPSPANARGASEVEGDXXXXXXXESREDDLGREDDILSFVAVAIALAIVGILVRKALRLAEVI 1244
            M  +++N AIKRI  DVRE+M +PSDQY AAPLE+N+F+WHFT+RGP DTEFE G+YHGRIILP +YPF+PP+IM  TPNGRF    KICL+IS+YHPE WQPAWG+RLILEALISF P+   GA+G LD+ A ER+RLA  S  +KC  CG VADLLPEL  + E      + S YA+QI +LH    +TA    A  E+  ++      S+       G+++        + E  V ++ +  K      +SE+TA T       +S+G A    PAE       +P        V+         + RE D    D  L ++ +AI +A+  ++ +K L++  ++
Sbjct:    1 MAASVRNTAIKRIQGDVREMMTNPSDQYAAAPLETNMFDWHFTLRGPRDTEFEDGIYHGRIILPSDYPFKPPNIMLLTPNGRFEVKKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFPAEERRRLAKLSVDYKCETCGRVADLLPELESENEEKEVEKKPSKYAEQIAQLHMHSLETAPPANANKETETVSAEVSENSEQEASAAAGAQT-------AQEEDSVESKPAKTKEAATTEVSESTAST-------QSIGAATIVAPAEEPAAAEAAPGVIDHHQNVDTPIAAHNVAQVRESD--SVDTFLHYLTIAIVVALFALIYKKLLQMHGIL 332

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BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A1V9YYG8_9STRA (Ubiquitin-conjugating enzyme E2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYG8_9STRA)

HSP 1 Score: 256 bits (654), Expect = 9.640e-76
Identity = 118/184 (64.13%), Postives = 143/184 (77.72%), Query Frame = 3

Query:  222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSRSTYADQIKELH 773
            M  +I N AIKRI ADVRE+M DPSDQY+AAPLESN+F+WHFTIRGP DTEFEGG++HGRI+LP EYPF+PP+I+  TPNGRF    KICL+IS+YHPEHWQPAWG+RLILEALISF P+   GA+G LD++A ERK+LA ES  W C +CG + DL+PE   + +       S YA QI +LH
Sbjct:    1 MASSIGNTAIKRIRADVREMMTDPSDQYYAAPLESNMFDWHFTIRGPRDTEFEGGIFHGRILLPSEYPFKPPNIILLTPNGRFEVKKKICLSISAYHPEHWQPAWGVRLILEALISFMPTKGEGAIGALDFTAEERKKLAKESVVWSCPQCGSIKDLIPEETKRDKPV----ESKYASQIAQLH 180

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BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Match: A0A833S8V9_PHYIN (Ubiquitin-conjugating enzyme n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833S8V9_PHYIN)

HSP 1 Score: 258 bits (658), Expect = 9.760e-76
Identity = 120/192 (62.50%), Postives = 147/192 (76.56%), Query Frame = 3

Query:  222 MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYKCGLVADLLPELRPKGESSGASSR-STYADQIKELHKLKAKTA 794
            M  +++N AIKRI  DVRE+M +PSDQY AAPLE+N+F+WHFT+RGP DTEFEGG+YHGRIILP +YPF+PP+IM  TPNGRF    KICL+IS+YHPE WQPAWG+RLILEALISF P+   GA+G LD+ A ER+RLA  S  +KC  CG VADLLPEL  + E +    + S YA+QI +LH    +TA
Sbjct:   11 MAASVRNTAIKRIQGDVREMMTNPSDQYAAAPLETNMFDWHFTLRGPRDTEFEGGIYHGRIILPSDYPFKPPNIMLLTPNGRFEVKKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFPAEERRRLAKLSVDYKCETCGRVADLLPELESEHEGNEEEKKPSKYAEQIAQLHMHSLETA 202

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig9840.21487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5LBS4_9PHAE	1.870e-206	90.03	UBC core domain-containing protein n=2 Tax=Ectocar...	[more]
I2CR53_NANGC	1.590e-80	62.63	Ubiquitin-conjugating enzyme E2 J1 n=2 Tax=Nannoch...	[more]
A0A8K1CP11_PYTOL	2.290e-78	62.56	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
V9E9I6_PHYPR	1.300e-76	62.30	UBC core domain-containing protein n=19 Tax=Phytop...	[more]
A0A484EG94_BRELC	2.140e-76	64.32	UBC core domain-containing protein n=1 Tax=Bremia ...	[more]
A0A6G0XT22_9STRA	6.050e-76	62.12	UBC core domain-containing protein n=1 Tax=Aphanom...	[more]
A0A0P1B4T1_PLAHL	6.560e-76	61.93	Ubiquitin-conjugating enzyme n=1 Tax=Plasmopara ha...	[more]
A0A329S705_9STRA	6.980e-76	42.82	UBC core domain-containing protein n=2 Tax=Phytoph...	[more]
A0A1V9YYG8_9STRA	9.640e-76	64.13	Ubiquitin-conjugating enzyme E2 n=1 Tax=Achlya hyp...	[more]
A0A833S8V9_PHYIN	9.760e-76	62.50	Ubiquitin-conjugating enzyme n=2 Tax=Phytophthora ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig9840	contig	Ecto-sp13_S_contig9840:593..4083 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	557.0
Seed ortholog evalue	6.2e-156
Seed eggNOG ortholog	2880.D7FUW7
Preferred name	UBC32
Model size	2330
KEGG ko	ko:K10578
KEGG Pathway	ko04120,ko04141,ko05012,map04120,map04141,map05012
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0048471,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Exons	3
EggNOG free text desc.	protein modification by small protein conjugation
EggNOG OGs	COG5078@1,KOG0428@2759
Ec32 ortholog description	Ubiquitin-conjugating enzyme E2
Ec32 ortholog	Ec-26_004480.1
EC	2.3.2.23
Cds size	1026
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko04121

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464247.0158193-UTR-Ecto-sp13_S_contig9840:592..813	1681464247.0158193-UTR-Ecto-sp13_S_contig9840:592..813	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig9840 593..813 +
1681464247.0697513-UTR-Ecto-sp13_S_contig9840:3000..4083	1681464247.0697513-UTR-Ecto-sp13_S_contig9840:3000..4083	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig9840 3001..4083 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464247.0287733-CDS-Ecto-sp13_S_contig9840:813..1119	1681464247.0287733-CDS-Ecto-sp13_S_contig9840:813..1119	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig9840 814..1119 +
1681464247.0417407-CDS-Ecto-sp13_S_contig9840:1703..1807	1681464247.0417407-CDS-Ecto-sp13_S_contig9840:1703..1807	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig9840 1704..1807 +
1681464247.0536253-CDS-Ecto-sp13_S_contig9840:2384..3000	1681464247.0536253-CDS-Ecto-sp13_S_contig9840:2384..3000	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig9840 2385..3000 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig9840.21487.1	prot_Ecto-sp13_S_contig9840.21487.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig9840 814..3000 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig9840:593..4083+
coding sequence from alignment at Ecto-sp13_S_contig9840:593..4083+

protein sequence of mRNA_Ecto-sp13_S_contig9840.21487.1

>prot_Ecto-sp13_S_contig9840.21487.1 ID=prot_Ecto-sp13_S_contig9840.21487.1|Name=mRNA_Ecto-sp13_S_contig9840.21487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=342bp
MPVNIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDT
EFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEH
WQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRQWKCYK
CGLVADLLPELRPKGESSGASSRSTYADQIKELHKLKAKTADDVAAESPV
IAAAAAAASDDLDPGTTGSESPSGKISSTKREAEVIAQVSGEKRGRIGAI
SETTAMTAPSSPRLRSVGGAPAEGGGDPTPSPANARGASEVEGDGGQQQQ
QESREDDLGREDDILSFVAVAIALAIVGILVRKALRLAEVI*

mRNA from alignment at Ecto-sp13_S_contig9840:593..4083+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig9840.21487.1 ID=mRNA_Ecto-sp13_S_contig9840.21487.1|Name=mRNA_Ecto-sp13_S_contig9840.21487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3491bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9840:593..4083+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAAAGACCGCCTTCCACGTGGCGAGTTCCACACAGGCCTAGCAGGACAC
CATCAGGAGCGTTGGCCTCTCATTCGGCGCTACTAGTCTCGACCATCACG
ATACGCCGTCAGCCTTCGCACTCGACGAACGCGAGTCCGGTTGGCATAGT
AGACACGAGCGGACACTTTGTTCAACACACGGCTCTCGGTCGGCCGCAGC
AGCGGAGCGAGGTTGTAAAAGATGCCGGTGAACATCAAGAACCCGGCCAT
CAAGCGTATACACGCCGACGTGCGGGAGCTTATGAAGGACCCTTCCGACC
AGTACCACGCTGCACCCCTCGAGTCCAACCTGTTCGAGTGGCACTTCACC
ATCAGGGGCCCGCCCGACACAGAGTTCGAGGGAGGGGTTTACCACGGCCG
AATCATCCTCCCGCCGGAGTACCCGTTCCGGCCGCCGGACATCATGTTCA
ACACACCCAACGGGAGGTTCAGCACCGGCATGAAGATCTGCTTGACGATA
TCGTCTTACCATCCCGAGCACTGGCAGGTCTGCGACAGCAAGTAGTGATT
TTGAGACTATGCAAGAGAAAGACTTTTGGTGTTGTATATTGCTGAGTTCG
TTGCCTTGCTACTGACCGATAGGTACCTGCAGGCTTTTGTTCCATGAGGT
TGCCTCCCCATGAGAATGAGGAGGCGTAGATGCCAGGTATGTCTCATTTC
TTCCCCTGGTATTGCACTGACCGAGGACGCACCCGTATGCAGGCGAGGGG
TATGCCCTCAATCCCGTGGTGCAGAGAAGTAGCCATACATTGCGATTGTT
CCAACAATTAGATATGGGTGCGCACGAACGTACGGCGTTCGGTTCCTCCG
CGTTTTTGGGCGTGGGGATCAACGCCGCCAGACACTTTCGGTACACCTCA
AACATTCCATGTCACGACAATTCTTAATTAATCTTCGAGAGCATCCAATA
GCAAGAGCACCTACGAAGAAGCACAGCTGCCGTCGTGCGCGCAACTTTCC
CAACCCGGCAAAGGGTAGTGAAAATGGACGTCTCTCGTGCCGTGATACAT
CAAAGACGATGACCGACCCTGCTCCGATTTCTCTCGTTACCGTTGAATGT
TTTCGCCGCAGCCGGCATGGGGTATCCGCCTCATCTTGGAGGCGTTGATT
AGCTTCTTCCCCTCGCCCTCGCACGGTGCTTTGGGGGGGTTGGACTGGTC
CGCGGGGGAGCGCAAGTGAGTCTTGAATTTTTCTCATTATACGACCGGCG
TTTTGCGTTGCGTTTGAGAGCGGAGAGGCTCTTGCGTGATATGATGCAAG
AGTAAAGCTCTTACATGACATGATGCAAGAGTACCGAAGATCTTGGCTGT
TGGAAAGCATTTGGCTCTCTCCAACCGGACTGCTGTCGGTTTCGCCTTAA
TTTTTTTGGGACATGGAGATGTCACGGCCGGAAAATACCTCTTCACAACA
AACAGGCCCGTGGGAATGTACTTGGTTGTAGGCTTCCTTCTCCTTTGATC
GTCCAAGGCGTGCGCTGCTTACGTGGTGCTGTTCTTCGCCGCGTCGACGC
ACGCTATCCGCATGCTGGCTTCCAAGTACCGGTGCGGTGTGGGATTACCG
TCGTGCGTGATGTCGTCTCATGGGGGCCTGTCTAGCACCTTCCGCTAGTT
CGTTTATCACCCCAATGCATCGGCCCCCTCTGGCGCAGCCCCCCCCTCCT
TCGGCCGTGCTGAAGAGACAAACACTGTACGGAGCACATAATACATCCGG
TTTATAACGCGCGTTGCAACCGAAATGGCGGACGTGTCGCAGGCGATTAG
CCGTGGAGTCGAGACAGTGGAAGTGCTACAAGTGCGGGTTAGTCGCCGAC
CTCCTTCCCGAGCTCCGGCCCAAGGGCGAGAGCAGCGGCGCGAGCAGCCG
CAGCACCTACGCGGACCAGATCAAAGAGCTGCACAAGCTCAAGGCAAAGA
CTGCTGACGACGTAGCCGCAGAGTCTCCTGTCATTGCCGCTGCTGCTGCA
GCGGCTAGTGATGACCTTGACCCTGGCACTACCGGCAGCGAGTCTCCCAG
CGGAAAGATTTCTTCTACAAAAAGAGAGGCGGAGGTGATAGCGCAAGTCT
CCGGCGAAAAACGCGGTAGAATCGGTGCCATTTCGGAGACGACAGCGATG
ACGGCTCCGTCAAGTCCTCGGCTCCGGAGCGTGGGCGGGGCGCCGGCGGA
GGGAGGGGGTGATCCGACGCCGTCCCCTGCCAACGCCAGGGGTGCGAGCG
AGGTTGAGGGGGACGGGGGGCAGCAGCAGCAGCAGGAGTCGAGGGAAGAT
GACCTCGGGCGGGAGGACGACATACTTTCGTTTGTCGCGGTTGCTATCGC
CCTCGCGATCGTCGGGATTTTGGTCCGGAAGGCCCTACGCCTTGCTGAGG
TGATCTGAACGCTCCGCTCGCGGAAAATGTGTTTTCCCTGCGGTGGCGGC
GGTGGCATGGAAAGGAGCGCTCAGAGACTGTTGTGAATACCGAGGCCTTT
GTTTGATGTTGTGGCACAACGAGCAGTACCACGGTAACGTGGTACCAAAA
TGCGTGTGCTTCCGTGGTGAACTGTTTTGGCTGTACAGGGAGTGCGGCGG
TGATGTTTGTGTGAGTGGCAGAACGACAGCGAAGGAAAAGCAGTTTGTTT
GTTCCTACTTGGTACGTACGAATGACTGTGAGACGTAGTCGCTAGGTTTT
CCTGCAGCGGGGAGAGGGATAGCCCCGGTCAAACCTCCACCCCACAATGT
AAAAGTAAAAAATACCAAATTTTAAATCACAAATTGAGGTGGGCAGCGCT
TTATTTTTGATTTGTCGAAGCTGTGGCAGTTGCTTGCAAGGATCTTCCCG
TGCGTTGTTGCGACTACCAAATCCTTTCTGTATTGGGGCGATGACCGTCT
TGTATACTTTTCGCTGGAGACAAGTTTTCCCATCATTTTACCTGTAAGTG
GCCAAAAGTTGGTGTGTCTGTTGGCGTTGTTTAATGAAGGTGCTTGCAGT
GAGCTAACTTTCTCCGAATGCCAGTGGACGGTGTGTGTGCTGCTCAAAAC
CACCGAATGCGTCTGCTCGTCTGGAGGTACAGGCTGATTTACAGCTGCTA
GCTGTTGTTCGTCTCGAGGTCCACGTGCTTCTCCAAGTCTCCGTCGACAT
GCTTCTAGAAAGCAAAGCCGACGGATCAACTGCACGCGTCGGGTTCGTTC
ATGATAGCTGAGCCGTGCATTCGCTTAACAGAGAGAGCTGTCGCATGGTT
GTGCAGTATATTCGTGACGTTCGCGAAGCGTCACCCCGCCAACGCACCGA
ACCGAAACACGCGCGAGAGCTGTTCTTACCACTTTGTTCCGGTGAAACAA
ACGCCACACTCAGATTGGCATCAGATTTTGGTAGGGTGTGGCCGCAGAAT
CCGTTTCCCGCCAGACAGTCAGGTCTCTCGCTCTGTACCACAGGGGGGGC
GCTTGTTTGGTGGATACGTGAGGAGCAAAACCGTATTTGCC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9840:593..4083+

>mRNA_Ecto-sp13_S_contig9840.21487.1 ID=mRNA_Ecto-sp13_S_contig9840.21487.1|Name=mRNA_Ecto-sp13_S_contig9840.21487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9840:593..4083+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGTGAACATCAAGAACCCGGCCATCAAGCGTATACACGCCGACGT
GCGGGAGCTTATGAAGGACCCTTCCGACCAGTACCACGCTGCACCCCTCG
AGTCCAACCTGTTCGAGTGGCACTTCACCATCAGGGGCCCGCCCGACACA
GAGTTCGAGGGAGGGGTTTACCACGGCCGAATCATCCTCCCGCCGGAGTA
CCCGTTCCGGCCGCCGGACATCATGTTCAACACACCCAACGGGAGGTTCA
GCACCGGCATGAAGATCTGCTTGACGATATCGTCTTACCATCCCGAGCAC
TGGCAGCCGGCATGGGGTATCCGCCTCATCTTGGAGGCGTTGATTAGCTT
CTTCCCCTCGCCCTCGCACGGTGCTTTGGGGGGGTTGGACTGGTCCGCGG
GGGAGCGCAAGCGATTAGCCGTGGAGTCGAGACAGTGGAAGTGCTACAAG
TGCGGGTTAGTCGCCGACCTCCTTCCCGAGCTCCGGCCCAAGGGCGAGAG
CAGCGGCGCGAGCAGCCGCAGCACCTACGCGGACCAGATCAAAGAGCTGC
ACAAGCTCAAGGCAAAGACTGCTGACGACGTAGCCGCAGAGTCTCCTGTC
ATTGCCGCTGCTGCTGCAGCGGCTAGTGATGACCTTGACCCTGGCACTAC
CGGCAGCGAGTCTCCCAGCGGAAAGATTTCTTCTACAAAAAGAGAGGCGG
AGGTGATAGCGCAAGTCTCCGGCGAAAAACGCGGTAGAATCGGTGCCATT
TCGGAGACGACAGCGATGACGGCTCCGTCAAGTCCTCGGCTCCGGAGCGT
GGGCGGGGCGCCGGCGGAGGGAGGGGGTGATCCGACGCCGTCCCCTGCCA
ACGCCAGGGGTGCGAGCGAGGTTGAGGGGGACGGGGGGCAGCAGCAGCAG
CAGGAGTCGAGGGAAGATGACCTCGGGCGGGAGGACGACATACTTTCGTT
TGTCGCGGTTGCTATCGCCCTCGCGATCGTCGGGATTTTGGTCCGGAAGG
CCCTACGCCTTGCTGAGGTGATCTGA