mRNA_Ecto-sp13_S_contig9838.21484.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9838.21484.1
Unique NamemRNA_Ecto-sp13_S_contig9838.21484.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9838.21484.1 vs. uniprot
Match: A0A6H5L5V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V2_9PHAE)

HSP 1 Score: 387 bits (995), Expect = 7.020e-134
Identity = 208/215 (96.74%), Postives = 211/215 (98.14%), Query Frame = 1 
Query:  100 MSDTDDDFDMPDSTLFSRPGSKDKDKAYAAQNKKKKSTPSFMSGLDALVAESTLDAERSEKISEIMNLGEDILEKDLLKTEQQKARTDATEAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQPAGELSVLAEAVKLAESDPADLEELLRSGLVPWLRKQLRGKGKTVPPEVFRWLLRLVARHEACAVVAAAEETLLRLLAEDDM 744
            MSDTDDDFDMPDSTLFSRPGSKDKDKA AAQNKKK STPSFMSGLDALVAESTL+AERSEKISEIMNLGEDILEKDLLKTEQQKARTDA EAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQPAGELSVLAEAVKLAESDPADLEELLRSGLVPWLRK+L+GKGKTVPPEVFRWLLRLV RHEACAVVAAAEETLLRLLAEDDM
Sbjct:    1 MSDTDDDFDMPDSTLFSRPGSKDKDKASAAQNKKK-STPSFMSGLDALVAESTLNAERSEKISEIMNLGEDILEKDLLKTEQQKARTDAFEAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQPAGELSVLAEAVKLAESDPADLEELLRSGLVPWLRKKLKGKGKTVPPEVFRWLLRLVTRHEACAVVAAAEETLLRLLAEDDM 214
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BLAST of mRNA_Ecto-sp13_S_contig9838.21484.1 vs. uniprot
Match: D7FJ25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ25_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 1.630e-82
Identity = 139/148 (93.92%), Postives = 141/148 (95.27%), Query Frame = 1 
Query:  100 MSDTDDDFDMPDSTLFSRPGSKDKDKAYAAQNKKKKSTPSFMSGLDALVAESTLDAERSEKISEIMNLGEDILEKDLLKTEQQKARTDATEAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQPAGELSVLAEAVKLA 543
            MSDTDDDFDMPDSTLFSRPGSK KDKA + QNKKK STPSFMSGLDALVAESTL+AERSEKISEIMNL EDILEKDLLKTEQQKARTDA EAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQP GELSVLAEAVKLA
Sbjct:    1 MSDTDDDFDMPDSTLFSRPGSKGKDKASSTQNKKK-STPSFMSGLDALVAESTLNAERSEKISEIMNLAEDILEKDLLKTEQQKARTDAAEAKDKADHKAIMEDTSIRIPGVIRVFRQPEEQGPPDLRFEPPQPEGELSVLAEAVKLA 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9838.21484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5V2_9PHAE7.020e-13496.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ25_ECTSI1.630e-8293.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9838contigEcto-sp13_S_contig9838:656..6035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size755
Hectar predicted targeting categoryother localisation
Exons6
Cds size753
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9838.21484.1prot_Ecto-sp13_S_contig9838.21484.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9838 656..6035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464246.6649356-CDS-Ecto-sp13_S_contig9838:655..7921681464246.6649356-CDS-Ecto-sp13_S_contig9838:655..792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9838 656..792 +
1681464246.67973-CDS-Ecto-sp13_S_contig9838:1698..18191681464246.67973-CDS-Ecto-sp13_S_contig9838:1698..1819Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9838 1699..1819 +
1681464246.6910534-CDS-Ecto-sp13_S_contig9838:2620..27191681464246.6910534-CDS-Ecto-sp13_S_contig9838:2620..2719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9838 2621..2719 +
1681464246.7050724-CDS-Ecto-sp13_S_contig9838:3784..38861681464246.7050724-CDS-Ecto-sp13_S_contig9838:3784..3886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9838 3785..3886 +
1681464246.719315-CDS-Ecto-sp13_S_contig9838:4804..48891681464246.719315-CDS-Ecto-sp13_S_contig9838:4804..4889Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9838 4805..4889 +
1681464246.7295215-CDS-Ecto-sp13_S_contig9838:5826..60351681464246.7295215-CDS-Ecto-sp13_S_contig9838:5826..6035Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9838 5827..6035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9838.21484.1

>prot_Ecto-sp13_S_contig9838.21484.1 ID=prot_Ecto-sp13_S_contig9838.21484.1|Name=mRNA_Ecto-sp13_S_contig9838.21484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=251bp
PTGWPLNSAPEASSTEQHQVSSLCFVCRKHREIMSDTDDDFDMPDSTLFS
RPGSKDKDKAYAAQNKKKKSTPSFMSGLDALVAESTLDAERSEKISEIMN
LGEDILEKDLLKTEQQKARTDATEAKDKADHKAIMEDTSIRIPGVIRVFR
QPEEQGPPDLRFEPPQPAGELSVLAEAVKLAESDPADLEELLRSGLVPWL
RKQLRGKGKTVPPEVFRWLLRLVARHEACAVVAAAEETLLRLLAEDDMVR
*
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mRNA from alignment at Ecto-sp13_S_contig9838:656..6035+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9838.21484.1 ID=mRNA_Ecto-sp13_S_contig9838.21484.1|Name=mRNA_Ecto-sp13_S_contig9838.21484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5380bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9838:656..6035+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAACTGGATGGCCTTTGAACAGCGCGCCCGAGGCCAGCAGCACAGAGCA
GCACCAGGTGTCATCCCTCTGCTTTGTTTGTAGAAAGCACCGGGAAATCA
TGTCAGACACCGACGATGACTTCGATATGCCGGACAGGTGAGCGACGAAG
TGCTTTACTGGCTGCGACTACTGGATTGTAGCAATGCACCCTCAAAAGAG
CCATCCCGATTTTGAATTTCAAACATGTCAGCCAACTCTTTCTGGTATAA
TTAATTGTGCACACTGATACTGATTGCCCTTGCCAAACCCTTGTACACGA
CGTAAGGTTGCAAAGTTGGGCCTGGCTGCCTGGGGCATGCCTGGGGTGGT
AGATTAGGACCGATAAAGACGAAGTCTTGCCTATTGTCGCCCCTCCCCCT
CCCCCCCCTTCCTGCTTTTGGGCTTCGAAAAGTGCGCAACCAGCTTCTCA
AGTCTGGACTTTACTTTTACACATACACTACGGTAGTCTACAAAACATTG
AGGATGGCCCTTCTCTCGTTTCCCCGCCTCAAAACCTAACTCATGTGAAT
CCTTGCCCCATGGCCATGCACCAGCCGTTACATCGCACATTGAGAGAGGA
GACAGAGAGAGGAAGAAAGTGAGGGGGATTTCCATGTGAAAAATTTCTGA
ACTCTCTGGGCTGGTTGTCCCACTCTCTCCTGAACCACAAGAGACGGTTT
TCTCCTCCTGTTCGGTACGCCGCACACGACAGATACTCGCTACATGTAGA
CCTATCTTGAACCTTACCTCATGAATGGAAACATGCACGAAGACAGACAT
CGAAATTCCTTGTGCAGCACACGCTTGCCCCAAGACCGCACTGGATACAC
TGCAGGCGAGAGCGTGCGTTCGTGAGCCGAAGGCCCTGTGGAAGTTCCCA
CGTCACGCTTCGCTCGGGGTTCCCCGTACATGGAAGGCGGTGTCTGATGC
ACCTCGATCGAAAGCGTTTGTTTTCCCTCCCCCGTGCCCCCCTTAGTTAA
CACGTCACGGATGTCCGCTTTTACCCCGAAACCGCACGTTCAGCACGCTG
TTCAGCCGGCCTGGTAGCAAAGACAAGGACAAGGCTTATGCAGCGCAGAA
CAAGAAGAAGAAATCGACACCTTCGTTCATGAGCGGCTTGGATGCGCTCG
TCGCAGAGTCCACCGTAAGTTACAGTAATTTCTTGGCTCTTGGCCCTTTA
CGTCCATCACCCTTCACTAGCGTGCCGTCGATATTCGGCCTTCTATCAGA
CCTCGTGCCCCCCCCACACCCCTACGCCGCCCTACGGAGGTCCGAGGTTC
TATCCGCAGTACTCGATTTGTCCTTGTTCGTATGCTACAGTTGCCTTCGA
TTCCGACATGTGATATTCGTTCCTGCCTTTTAAAAAATTCTAGGCCTCCC
TCTCTACTGTAGTAGGTTCGATAAGTGTGTCCGCCACAGACGGTAGAACT
GGACCGAGTGGCGATGGGCACAGAATCCCGGAGATCCCCCACACCTTCAC
TACTTGACGCCAGGGAAAGTAGTTGGAGTATGCGTGCTCCGTTTCTTTAG
GTTCGTGGCGTTTTGTCTTCGTTGTAAGGCCTTTCTCGTACGAGTTTTGG
CCGGAGCTACATACCCGCAACACCAGCGAAGTATGCGAGGCACCCATTGG
CACTACTCACTCCACTATTTTGGTTTGTATCTTCAGAAGATAGACCATCT
TCAAAAATGAAGTGTGGTGTTCACAAAGACGAGCTAACTTTGAGGTACTA
AGACCATCAAGTGATACAACTGAAACCGCGTGGAAGATGAAGCGATCTAT
AACCACGTTAGAGGTGAAGATGTTACCAAGAGATATGGGGCACCAAGCGC
ATTGTGCTTAGGTACAGCAAAGCTTTCTTTCATGACGTACCGCTTCTCTG
AACACGATGTGATTTTTTGGCGCTTGCGCCGTGAACCTTGTTTGATTAAA
TTCTCGACATGGCAGCTCGACGCTGAGAGGTCCGAGAAGATCAGCGAGAT
CATGAACCTGGGAGAAGACATTCTCGAAAAGGACTTGCTGAAGACGGAAC
AGCAGAAAGCAAGGGTGAGGTTGTCGTCCAACGTACGAGTCCGTAAATTG
TGGAAGTACGTTTTGGGGTCGTGTTGGTCGAGAGGTAGGGACGGGTTTCG
GGACGATTTGCTCAGCTCCGGTGACGCTGCTGCTACTCTGAGTATATATA
TTGCTGTGTTGTAGAAACATACCCGGGGTGTGAGGGGGTTCGCTGGATGG
AAACGTAGACGTGCACAAGTACTACAAGGTAACGTCGCGTGGCCTCTCCT
TGCATCGCCTCGTTGGTTTGGTGTGTGTTGTGCCGCTGTCGGGGAACTAT
CGAATGCTGTGCGTCGCAGGGGTGATGTGGTGATGCCCCCCTCTCTTTGG
TGCTTGGCTGTCGTTCGTTGTGTGACATGCACACGCGGCTGGTTGCCGTT
TTGGGCCTGCAGCCTGCACGGCAGAGAGCGCGACAGCCGCTTGAAACGCC
CGAACACACCCGAGAATTATGAGGGGTCCCCCCCCTCCCCTCCTTGATCT
CAGGTAGATATGGCTTGAGAGCACGTTTCCGCGCGGCGCCCGGTCGCACA
GCACTACACAGCAGTCACGCGTGCACACATTGGAGGACAGCCAATCCACT
TGCACTAGAAAAGGCTCACGACAGTAGTTTCCCCCGTGACGTGAACAAAA
GGTCGAACGCCTGGGATACGGGAACGAAAGAGGCTGACGAACAACGCCGC
TCGCCATATGGAGTTCATACCGTTCGAACCGCTTTTCGATCGGTCTGATT
CCCCGCGGGAAGCAGCCTTCCTTCACCCTTGTGCATTCTGCATACCTTTC
CAGTCTTTTTTTTCTTCTTTTTTCTGGACGCCCATCTTGTCCTGCTCGGC
ACCCCAGCCTAGCGTGCAGTCCCTCCCCTTCAGCCACTCCTGGCTGAGGA
GGACGGTGTTGCACTAGATGGCAGCTCCCTGAGGCCCTCCATGCCTATCC
TCCTCTGGCAAGCGCCTCCAAGTGCACCTGGAGGGGAAGGGATAAGCGGT
CCCCTAAGGGCATTCTCACCAACGGTTTTTTTATTGTCGTACTTTCTCTT
GCACTCATCATGCGCTGTGCTTTCAACAGACGGACGCGACCGAGGCCAAG
GACAAGGCGGACCACAAGGCCATCATGGAGGACACGTCCATCAGAATCCC
GGGGGTCATCCGAGTTTTCCGACAGCCCGAGGTGTGTCAAGGCTGACGAC
TCGGGGGAGCTTTCGCGGGGGGCGTGACCGATATATTCCTGCTTGCCCTA
TGTACGCATGTATTGTGCAGGAGCCAACGCCATGTCACGTGGGTGATCCC
CTACAAGTGCTGCGAATTGTACCCCACCAACGGTAGGCCCAATCGACTCG
CAGACACATGTACCCGACCACAATTTGTGCTGACTGCTGTTGGTGTCGTT
CGCCACCGGTAAATGATGTTGAACCCACTTCAAACCACGGTTCGACCGTA
CGAGAAACATGCCGGAGAGTCCCAAACCATTTGTTATTTTTATCCTGTGC
GCGAGAGCGACTGCCGCACTGAGTACGCCTAAGCGAACCACAAGAACTGT
GTGTGCGTTTGTTCACGAAGGGCGTGCAAGGAATTTGAACCGCGCGCAAA
ATGTGTGCTGAGGAATGCCTTTCCTTTGTCTAGCATCGACCAAGCGAACA
GGTTGAGTAAATAAAGTGTTGTGTGTTTTTGTTTTTTGCATCCAACCCCG
CTAGCCGGCGATGTGTGTGTATCATCGGCCATTCACATACACAAAAGCAG
CGACAAGCCATCTTCTTGCGTGGGGCGCAAGTAACATACCATGGTATGGT
ACCGTTTTGGTCCATTGTGCCTCCAGGGACAAGGAGCATCACGGAAAGAC
CAACACAGCCAACGACGCACACAACGTAGGCTACGTATACCAACGCACAG
ACAGTGCGTCTTTTGGTACCCCTCATGCAGGAACCCAACACTTGTTGCGG
ATTGCTTCACCCTCTCGGCGGTCTTCGCTCTTCTGCTTCGCTCTGCTTCG
CTTTGCTTCGCTTTGCTTCGCTTTGCTTCCCCTTTTCGCTTTGCTTCCGC
TTTGCTTCGCCTTACCTTCGCTTCGCTTGGCTTCGCGTTGGTGGGTCAGG
AACAAGGGCCGCCAGATTTGAGGTTCGAGCCTCCCCAGCCTGCGGGAGAG
CTGTCGGTTCTGGCAGAGGCTGTGAAACTCGCAGGTGGGTAGGTGTGTGC
AGACGTCGAGATTGTCGTTTGTCGTGGTGCGCCGCACTACCAAGAGGGTT
GTCATGTTTGACTTTGGCGATGGTAAGTGTATGTCAACCCCTCTTTAGCT
GATTTCTCGAGTGCTCCGCTGCGGTAAGGGTGCGAATGGCCGAATGATAC
GTGTTCGTCATGGTGTCGATGAGACCTTTCCAACGCCGCGCTGTAGTGCA
CCGGCACTTATGAGAGCGTTCAAGCTCTGCCCAACGGGGGGGCTGACACA
TAACAAGTTTAAACATGGGGTTTGCTGCACGTATGGCTCTCTGCCTATAA
ACAGGGGGTGTACTCTGCTGCTGCTGCTGCTGCTGCAACACATGTAATAT
ACTGCTTGCGTAAAGGGTTTTCTTGGGCACCACTGTTTTTACTCTGGCAA
TGTCGTCCGCCTTCGCACAACGACGGCATCTAGCACACCACGGGGTCGAG
CAAGTTGACTGTCCCAGGCACGAACAGGCGTACCACCACTTACTCGAAAA
CACACGACGAACCCGCAAGTGTGCACGATGGCATCACCGTCATCTCGTCT
TTTCGGGATTCGCGCCCGACTAGAAATTCTAGTCGTGAACCCAAGCCAGC
ACAACAACACAACACAACATGCCACTTGTACGGAATGTTCCCGAAATGCT
GAAACCCTCCCTCCCGCTGTTGGGTCGAGGGTGCTTGTCGTCAGAGGCGC
GAGGGAAGGTTCGCCCAAGGGCCTTGTTAGTAACGAGTAGAGAGGGCGCG
CGGGCCCAGGCACAGCACAAGGGGAATCGCCCTTCTACAAACACGTACCA
ACATGATACACAAACCCGCCTTTGCGTCGAGGACACGTGGTCAATGGTAT
AACAACTATGGCATGCAAAACATGAGTACACCAATCCCCCCCCACACACA
CATGGTTCTGTCTCCTATCAGAAAGCGATCCGGCGGACCTGGAAGAGCTC
CTTCGATCCGGTCTCGTGCCGTGGCTGAGGAAGCAGCTGAGAGGAAAAGG
AAAGACGGTGCCCCCGGAGGTGTTCCGCTGGCTGCTGCGCTTGGTTGCCC
GACACGAGGCGTGCGCGGTTGTGGCGGCCGCGGAAGAAACCCTTCTCCGG
CTCTTGGCTGAGGATGACATGGTGAGATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9838:656..6035+

>mRNA_Ecto-sp13_S_contig9838.21484.1 ID=mRNA_Ecto-sp13_S_contig9838.21484.1|Name=mRNA_Ecto-sp13_S_contig9838.21484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9838:656..6035+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAACTGGATGGCCTTTGAACAGCGCGCCCGAGGCCAGCAGCACAGAGCA
GCACCAGGTGTCATCCCTCTGCTTTGTTTGTAGAAAGCACCGGGAAATCA
TGTCAGACACCGACGATGACTTCGATATGCCGGACAGCACGCTGTTCAGC
CGGCCTGGTAGCAAAGACAAGGACAAGGCTTATGCAGCGCAGAACAAGAA
GAAGAAATCGACACCTTCGTTCATGAGCGGCTTGGATGCGCTCGTCGCAG
AGTCCACCCTCGACGCTGAGAGGTCCGAGAAGATCAGCGAGATCATGAAC
CTGGGAGAAGACATTCTCGAAAAGGACTTGCTGAAGACGGAACAGCAGAA
AGCAAGGACGGACGCGACCGAGGCCAAGGACAAGGCGGACCACAAGGCCA
TCATGGAGGACACGTCCATCAGAATCCCGGGGGTCATCCGAGTTTTCCGA
CAGCCCGAGGAACAAGGGCCGCCAGATTTGAGGTTCGAGCCTCCCCAGCC
TGCGGGAGAGCTGTCGGTTCTGGCAGAGGCTGTGAAACTCGCAGAAAGCG
ATCCGGCGGACCTGGAAGAGCTCCTTCGATCCGGTCTCGTGCCGTGGCTG
AGGAAGCAGCTGAGAGGAAAAGGAAAGACGGTGCCCCCGGAGGTGTTCCG
CTGGCTGCTGCGCTTGGTTGCCCGACACGAGGCGTGCGCGGTTGTGGCGG
CCGCGGAAGAAACCCTTCTCCGGCTCTTGGCTGAGGATGACATGGTGAGA
TAA
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