mRNA_Ecto-sp13_S_contig98355.21483.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig98355.21483.1
Unique NamemRNA_Ecto-sp13_S_contig98355.21483.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig98355.21483.1 vs. uniprot
Match: A0A6H5KCL5_9PHAE (GMC_OxRdtase_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCL5_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 8.880e-84
Identity = 133/137 (97.08%), Postives = 133/137 (97.08%), Query Frame = 1 
Query:    1 PKQQLTVFPRVTEPHILALAKIRPSVQAPPMMLVTVSVLDPEGRCVVRLNEDDPHRGNPHIERDQREGEPDPLSELDAKKLAWGVGQVRRIAQTSPLLEELRGEVYPGPGVSGAADDTAGEDVDLVGWVKQHVYSNS 411
            P  QLTVFPRVTEPHILALA IRPS QAPPMMLVTVSVLDPEGRCVVRLNEDDPHRGNPHIERDQREGEPDPLSELDAKKLAWGVGQVRRIAQTSPLLEELRGEVYPGPGVSGAADDTAGEDVDLVGWVKQHVYSNS
Sbjct:  465 PDIQLTVFPRVTEPHILALANIRPSAQAPPMMLVTVSVLDPEGRCVVRLNEDDPHRGNPHIERDQREGEPDPLSELDAKKLAWGVGQVRRIAQTSPLLEELRGEVYPGPGVSGAADDTAGEDVDLVGWVKQHVYSNS 601
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BLAST of mRNA_Ecto-sp13_S_contig98355.21483.1 vs. uniprot
Match: A0A4D9CPB5_9STRA (GMC_OxRdtase_N domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPB5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 9.710e-12
Identity = 56/165 (33.94%), Postives = 79/165 (47.88%), Query Frame = 1 
Query:    1 PKQQLTVFPRVTEPHILA----------------LAKIRPSVQAPPM-------MLVTVSVLDPEGRCVVRLNEDDPHRG-----NPHIERDQREGEPDPLSELDAKKLAWGVGQVRRIAQTSPLLEELRGEVYPGPGVSGAADDTAGEDVDLVGWVKQHVYSNS 411
            P  QLTVFPR++EPH++                  A +  +   PP        MLVT+++LDP+ R  V L+  D   G       ++   + EG    LS++D  KL WGV  VR IA+TSP+ E  + E  PGP       D   E V L  WV+++ + NS
Sbjct:  534 PDLQLTVFPRISEPHLVQKQQESEEAMDAGASPRAANLSSTPTLPPASKTQRGTMLVTIALLDPQARYSVELDPRDAMHGPARVLEANVSASEGEGF---LSDMDIGKLIWGVRNVRVIARTSPMTEAAQEETLPGP-------DLVDEGV-LKKWVRKNKFVNS 687
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BLAST of mRNA_Ecto-sp13_S_contig98355.21483.1 vs. uniprot
Match: A0A7S0PU53_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PU53_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.090e-9
Identity = 54/153 (35.29%), Postives = 70/153 (45.75%), Query Frame = 1 
Query:    1 PKQQLTVFPRVTEPHIL---------ALAKIRPSVQAP---PMMLVTVSVLDPEGRCVVRLNEDDPHRGN------------------PHIERDQREGEPDPLSELDAKKLAWGVGQVRRIAQTSPLLEELRGEVYPGPG-VSGAADDTAGED 366
            P  QLTVFPRV EPH++           A    SVQ P     MLVTV++L PE R  V+ +  +  + N                  P         +   LS+LD K+LAWGV +VRRI   +PL  E   E++PG   V G  D+   ED
Sbjct:   59 PDLQLTVFPRVIEPHVIDRSHKLNQQRSANDGSSVQIPIESSAMLVTVALLQPEARYEVKTSRREKKKKNISTGVLTDMNHTFWGFDFPLPSVGLPPNKTSYLSDLDVKRLAWGVEEVRRIRSFAPLSRETEEELFPGSRIVDGLLDNHIKED 211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98355.21483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KCL5_9PHAE8.880e-8497.08GMC_OxRdtase_N domain-containing protein n=2 Tax=E... [more]
A0A4D9CPB5_9STRA9.710e-1233.94GMC_OxRdtase_N domain-containing protein n=4 Tax=M... [more]
A0A7S0PU53_9STRA2.090e-935.29Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig98355contigEcto-sp13_S_contig98355:2..412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score273.9
Seed ortholog evalue4.2e-71
Seed eggNOG ortholog2880.D7G8F7
Model size411
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.flavin adenine dinucleotide binding
EggNOG OGsCOG2303@1,KOG1238@2759
Cds size411
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464246.6304708-CDS-Ecto-sp13_S_contig98355:1..4121681464246.6304708-CDS-Ecto-sp13_S_contig98355:1..412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98355 2..412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig98355.21483.1prot_Ecto-sp13_S_contig98355.21483.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig98355 2..412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig98355.21483.1

>prot_Ecto-sp13_S_contig98355.21483.1 ID=prot_Ecto-sp13_S_contig98355.21483.1|Name=mRNA_Ecto-sp13_S_contig98355.21483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
PKQQLTVFPRVTEPHILALAKIRPSVQAPPMMLVTVSVLDPEGRCVVRLN
EDDPHRGNPHIERDQREGEPDPLSELDAKKLAWGVGQVRRIAQTSPLLEE
LRGEVYPGPGVSGAADDTAGEDVDLVGWVKQHVYSNS
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mRNA from alignment at Ecto-sp13_S_contig98355:2..412-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig98355.21483.1 ID=mRNA_Ecto-sp13_S_contig98355.21483.1|Name=mRNA_Ecto-sp13_S_contig98355.21483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98355:2..412- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGAAACAACAGCTTACAGTATTCCCAAGGGTGACGGAGCCCCACATTCT
CGCCCTCGCGAAGATAAGACCATCGGTGCAGGCCCCGCCCATGATGCTCG
TGACGGTCTCCGTGTTGGACCCCGAGGGTCGATGTGTCGTTCGATTAAAC
GAGGATGACCCGCACAGGGGCAACCCACACATCGAGCGTGACCAGAGGGA
GGGGGAGCCCGACCCACTGAGCGAGCTAGACGCAAAGAAGCTGGCGTGGG
GGGTGGGGCAAGTACGCAGAATAGCGCAGACTTCACCTCTCCTGGAGGAA
CTCCGGGGAGAGGTTTATCCTGGCCCCGGGGTGAGCGGTGCCGCCGATGA
CACCGCCGGCGAAGACGTCGATCTCGTGGGCTGGGTCAAGCAGCACGTGT
ACAGCAACAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98355:2..412-

>mRNA_Ecto-sp13_S_contig98355.21483.1 ID=mRNA_Ecto-sp13_S_contig98355.21483.1|Name=mRNA_Ecto-sp13_S_contig98355.21483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98355:2..412- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGAAACAACAGCTTACAGTATTCCCAAGGGTGACGGAGCCCCACATTCT
CGCCCTCGCGAAGATAAGACCATCGGTGCAGGCCCCGCCCATGATGCTCG
TGACGGTCTCCGTGTTGGACCCCGAGGGTCGATGTGTCGTTCGATTAAAC
GAGGATGACCCGCACAGGGGCAACCCACACATCGAGCGTGACCAGAGGGA
GGGGGAGCCCGACCCACTGAGCGAGCTAGACGCAAAGAAGCTGGCGTGGG
GGGTGGGGCAAGTACGCAGAATAGCGCAGACTTCACCTCTCCTGGAGGAA
CTCCGGGGAGAGGTTTATCCTGGCCCCGGGGTGAGCGGTGCCGCCGATGA
CACCGCCGGCGAAGACGTCGATCTCGTGGGCTGGGTCAAGCAGCACGTGT
ACAGCAACAGT
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