prot_Ecto-sp13_S_contig9828.21475.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig9828.21475.1
Unique Name	prot_Ecto-sp13_S_contig9828.21475.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	204

Homology

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BLAST of mRNA_Ecto-sp13_S_contig9828.21475.1 vs. uniprot
Match: D8LT18_ECTSI (Valine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT18_ECTSI)

HSP 1 Score: 412 bits (1058), Expect = 1.710e-134
Identity = 202/204 (99.02%), Postives = 203/204 (99.51%), Query Frame = 0

Query:    1 QVCLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDILFFWVARMVMMSLELTDVLPFKTVYLHAMVRDKFGRKMSKTLGNVIDPLEVIYGCDLDTLHKKLEVGNLPAKEMQKAKEGQKMDFPNGIPECGADALRFGLLAYTVQGRDVNLDISRVVGYRNFCNKLWNAVRFALTYLTDASPPLDLAAELIA 204
            QVCLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDILFFWVARMVMMSLELTDVLPFKTVYLHAMVRDKFGRKMSKTLGNVIDPLEVIYGCDLDTLHKKLEVGNLPAKEMQKAKEGQKMDFP GIPECGADALRFGLLAYTVQGRDVNLDISRVVGYRNFCNKLWNAVRFALTYLTDASPPLDLA+ELIA
Sbjct:  573 QVCLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDILFFWVARMVMMSLELTDVLPFKTVYLHAMVRDKFGRKMSKTLGNVIDPLEVIYGCDLDTLHKKLEVGNLPAKEMQKAKEGQKMDFPKGIPECGADALRFGLLAYTVQGRDVNLDISRVVGYRNFCNKLWNAVRFALTYLTDASPPLDLASELIA 776

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BLAST of mRNA_Ecto-sp13_S_contig9828.21475.1 vs. uniprot
Match: A0A7S1VD00_9STRA (Valine--tRNA ligase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VD00_9STRA)

HSP 1 Score: 315 bits (807), Expect = 2.990e-105
Identity = 155/204 (75.98%), Postives = 176/204 (86.27%), Query Frame = 0

Query:    1 QVCLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDILFFWVARMVMMSLELTDVLPFKTVYLHAMVRDKFGRKMSKTLGNVIDPLEVIYGCDLDTLHKKLEVGNLPAKEMQKAKEGQKMDFPNGIPECGADALRFGLLAYTVQGRDVNLDISRVVGYRNFCNKLWNAVRFALTYLTDASPPLDLAAELIA 204
            ++ L +DEDVLDTWFSSGLFPFSVFGWP+  ++DLKAF+PT+LLETG DILFFWVARMVMM LELTD LPF TVYLHAMVRDK GRKMSK+LGNVIDPLEVI GC LD+L KKL+ GNLP KE+ KA++ QK DFP+GIPECG+DALRFGLLAYTVQGRD+NLDI RVVGYR FCNKLWNA RFALT++ D  P   L  +L+A
Sbjct:   25 EIELERDEDVLDTWFSSGLFPFSVFGWPE-QTDDLKAFYPTSLLETGSDILFFWVARMVMMGLELTDQLPFHTVYLHAMVRDKDGRKMSKSLGNVIDPLEVINGCTLDSLLKKLQGGNLPPKEVAKAQKDQKADFPDGIPECGSDALRFGLLAYTVQGRDINLDIKRVVGYRQFCNKLWNATRFALTFVADFKPTPTLLDDLMA 227

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BLAST of mRNA_Ecto-sp13_S_contig9828.21475.1 vs. uniprot
Match: I2CNY9_NANGC (Valine--tRNA ligase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CNY9_NANGC)

HSP 1 Score: 320 bits (821), Expect = 2.830e-101
Identity = 157/203 (77.34%), Postives = 174/203 (85.71%), Query Frame = 0

Query:    1 QVCLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDILFFWVARMVMMSLELTDVLPFKTVYLHAMVRDKFGRKMSKTLGNVIDPLEVIYGCDLDTLHKKLEVGNLPAKEMQKAKEGQKMDFPNGIPECGADALRFGLLAYTVQGRDVNLDISRVVGYRNFCNKLWNAVRFALTYLTDASPPLDLAAELI 203
            QV L QDEDVLDTWFSSGLFPFSVFGWPD  +ED +AF+PTTLLETG DILFFWVARMVMM L+LT  LPFKTVYLHAMVRDK GRKMSK+LGNVIDPLEVI GC LD L++K++ GNL  KE+++AK+ Q+ DFP G+PECG DALRFGLLAYTVQGRDVNLDI RVVGYRNFCNKLWNA RFALTY+TD  P   LA  L+
Sbjct:  607 QVDLWQDEDVLDTWFSSGLFPFSVFGWPD-KTEDFQAFYPTTLLETGQDILFFWVARMVMMGLQLTQTLPFKTVYLHAMVRDKNGRKMSKSLGNVIDPLEVIGGCTLDDLYRKIQEGNLAPKEIERAKKAQREDFPQGLPECGTDALRFGLLAYTVQGRDVNLDIQRVVGYRNFCNKLWNATRFALTYVTDLVPTATLARSLL 808

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BLAST of mRNA_Ecto-sp13_S_contig9828.21475.1 vs. uniprot
Match: A0A6V1PAS2_HETAK (Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PAS2_HETAK)

HSP 1 Score: 321 bits (822), Expect = 7.630e-100
Identity = 160/202 (79.21%), Postives = 174/202 (86.14%), Query Frame = 0

Query:    1 QVCLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDILFFWVARMVMMSLELTDVLPFKTVYLHAMVRDKFGRKMSKTLGNVIDPLEVIYGCDLDTLHKKLEVGNLPAKEMQKAKEGQKMDFPNGIPECGADALRFGLLAYTVQGRDVNLDISRVVGYRNFCNKLWNAVRFALTYLTDASPPLDLAAEL 202
            QV L+QDEDVLDTWFSSGLFPFSVFGWP+  ++DLKAF+PTTLLETGMDILFFWVARMVMM L LT  LPF TVYLHAMVRDK+GRKMSK+LGNVIDPLEVI GC L TL  KL  GNLPAKE++KA + Q  DFP GIPE GADALRFGLLAYTVQGRDVNLDI R+VGYRNFCNKLWNA RFAL+Y+TD +P  DLA  L
Sbjct:  591 QVELAQDEDVLDTWFSSGLFPFSVFGWPN-PTDDLKAFYPTTLLETGMDILFFWVARMVMMGLHLTGTLPFTTVYLHAMVRDKYGRKMSKSLGNVIDPLEVINGCALQTLIDKLRAGNLPAKEVEKAAKAQAADFPEGIPEVGADALRFGLLAYTVQGRDVNLDIQRLVGYRNFCNKLWNATRFALSYITDLAPAGDLAEAL 791

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BLAST of mRNA_Ecto-sp13_S_contig9828.21475.1 vs. uniprot
Match: A0A7S4J4F9_9STRA (Valine--tRNA ligase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J4F9_9STRA)

HSP 1 Score: 311 bits (797), Expect = 3.790e-99
Identity = 151/203 (74.38%), Postives = 175/203 (86.21%), Query Frame = 0

Query:    1 QVCLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDILFFWVARMVMMSLELTDVLPFKTVYLHAMVRDKFGRKMSKTLGNVIDPLEVIYGCDLDTLHKKLEVGNLPAKEMQKAKEGQKMDFPNGIPECGADALRFGLLAYTVQGRDVNLDISRVVGYRNFCNKLWNAVRFALTYLTDASPPLDLAAELI 203
            ++ L +DEDVLDTWFSSGLFPFSVFGWPD  +EDL+AF+PT+LLETG+DILFFWVARMVMM L+LTD LPF TVYLHAMVRDK GRKMSK+LGNVIDPLEVI+GC L +L  KL+ GNLP KE+ +AK+ Q  DFP+GIPECG+DALRFGLLAYTVQGRDVNLDI RVVGYR FCNKLWNA RFAL +++D +P   L  +L+
Sbjct:  215 EITLERDEDVLDTWFSSGLFPFSVFGWPD-KTEDLEAFYPTSLLETGLDILFFWVARMVMMGLQLTDKLPFHTVYLHAMVRDKEGRKMSKSLGNVIDPLEVIHGCTLSSLQSKLDGGNLPPKEVARAKKDQASDFPDGIPECGSDALRFGLLAYTVQGRDVNLDIKRVVGYRQFCNKLWNATRFALQFVSDFAPTPTLLDDLM 416

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BLAST of mRNA_Ecto-sp13_S_contig9828.21475.1 vs. uniprot
Match: A0A7S1FW38_9STRA (Valine--tRNA ligase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FW38_9STRA)

HSP 1 Score: 318 bits (815), Expect = 1.090e-98
Identity = 157/203 (77.34%), Postives = 176/203 (86.70%), Query Frame = 0

Query:    1 QVCLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDILFFWVARMVMMSLELTDVLPFKTVYLHAMVRDKFGRKMSKTLGNVIDPLEVIYGCDLDTLHKKLEVGNLPAKEMQKAKEGQKMDFPNGIPECGADALRFGLLAYTVQGRDVNLDISRVVGYRNFCNKLWNAVRFALTYLTDASPPLDLAAELI 203
            +V LS+DEDVLDTWFSSGLFPFSVFGWP+  ++D+KAF+PTTLLETG DILFFWVARMVMM L+LTDVLPFKTVYLHAMVRDK GRKMSK+LGNVIDPLEVI GC L TL+ KL+ GNLPAKE+ +AK  Q  DFP+GIPECG+DALRFGLLAYTVQGRDVNLDI RVVGYR FCNKLWNA RFAL ++TD  P   L  +L+
Sbjct:  618 EVDLSRDEDVLDTWFSSGLFPFSVFGWPN-QTDDMKAFYPTTLLETGSDILFFWVARMVMMGLQLTDVLPFKTVYLHAMVRDKDGRKMSKSLGNVIDPLEVINGCTLATLNSKLDNGNLPAKEVVRAKADQASDFPDGIPECGSDALRFGLLAYTVQGRDVNLDIKRVVGYRQFCNKLWNATRFALQFVTDFEPTASLLHDLM 819

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BLAST of mRNA_Ecto-sp13_S_contig9828.21475.1 vs. uniprot
Match: A0A7S0GD30_9STRA (Valine--tRNA ligase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GD30_9STRA)

HSP 1 Score: 303 bits (776), Expect = 2.850e-98
Identity = 147/200 (73.50%), Postives = 171/200 (85.50%), Query Frame = 0

Query:    4 LSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDILFFWVARMVMMSLELTDVLPFKTVYLHAMVRDKFGRKMSKTLGNVIDPLEVIYGCDLDTLHKKLEVGNLPAKEMQKAKEGQKMDFPNGIPECGADALRFGLLAYTVQGRDVNLDISRVVGYRNFCNKLWNAVRFALTYLTDASPPLDLAAELI 203
            L +DEDVLDTWFSSGLFPFSV GWPD  ++DLKAF+PT+LLETG DI+FFWVARMVMM LELTD LPF TVYLHAMVRDK GRKMSK+LGNVIDPLEVI+GC L++L  KL+ GNLP KE+++AK+ Q   FP GIPECG+DALRFGLLAYT QG+DVNLDI +VVGYRNFCNKLWNA +FAL +++D SP   L  +L+
Sbjct:   16 LERDEDVLDTWFSSGLFPFSVMGWPD-QTDDLKAFYPTSLLETGSDIIFFWVARMVMMGLELTDTLPFHTVYLHAMVRDKEGRKMSKSLGNVIDPLEVIHGCSLESLLAKLDGGNLPTKEVERAKKDQAKVFPTGIPECGSDALRFGLLAYTRQGKDVNLDIQQVVGYRNFCNKLWNATKFALQFISDFSPTPTLLKDLM 214

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BLAST of mRNA_Ecto-sp13_S_contig9828.21475.1 vs. uniprot
Match: A0A8J9T5C2_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T5C2_PHATR)

HSP 1 Score: 302 bits (774), Expect = 5.870e-98
Identity = 143/203 (70.44%), Postives = 175/203 (86.21%), Query Frame = 0

Query:    2 VCLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDILFFWVARMVMMSLELTDVLPFKTVYLHAMVRDKFGRKMSKTLGNVIDPLEVIYGCDLDTLHKKLEVGNLPAKEMQKAKEGQKMDFPNGIPECGADALRFGLLAYTVQGRDVNLDISRVVGYRNFCNKLWNAVRFALTYLTDASPPLDLAAELIA 204
            + + +DEDVLDTWFSSGLFPFSV GWPD D+ DLKAF+PT+LLETG+DILFFWVARMVMM LELTD LPF TV+LHAMVRDK G+KMSK+LGNVIDPLEVI GC L +L ++LE GNLPAKE++++K+  +++FP+GIPECG+DALRFGL+AY VQGRD+NLD+ RVVG+R FCNKLWNA RFAL ++ D +P   L  +L+A
Sbjct:   17 ISIERDEDVLDTWFSSGLFPFSVMGWPD-DTSDLKAFYPTSLLETGLDILFFWVARMVMMGLELTDTLPFHTVFLHAMVRDKEGKKMSKSLGNVIDPLEVINGCSLASLQERLEGGNLPAKEVERSKKNNELEFPDGIPECGSDALRFGLMAYMVQGRDINLDVKRVVGFRLFCNKLWNATRFALQFVADFTPTPTLLDDLMA 218

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BLAST of mRNA_Ecto-sp13_S_contig9828.21475.1 vs. uniprot
Match: A0A7S3HI62_9STRA (Valine--tRNA ligase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HI62_9STRA)

HSP 1 Score: 312 bits (799), Expect = 1.880e-97
Identity = 152/193 (78.76%), Postives = 169/193 (87.56%), Query Frame = 0

Query:    2 VCLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDILFFWVARMVMMSLELTDVLPFKTVYLHAMVRDKFGRKMSKTLGNVIDPLEVIYGCDLDTLHKKLEVGNLPAKEMQKAKEGQKMDFPNGIPECGADALRFGLLAYTVQGRDVNLDISRVVGYRNFCNKLWNAVRFALTYLTDASP 194
            + LSQDEDVLDTWFSSGLFPFSVF WP+ ++EDLKAFFPTTLLETG+DILFFWVARMVMMSL LTD+LPFKTVYLHAMVRDK GRKMSK+ GNVIDP+EVI+GC L  L KK++ GNLP KE+ KAK  Q +DFP+GIPECGADALRFGLLAYTVQGRDVNLDI RVVGYR FCNK+WNA +F LTY+    P
Sbjct:  580 ITLSQDEDVLDTWFSSGLFPFSVFAWPN-NTEDLKAFFPTTLLETGVDILFFWVARMVMMSLHLTDLLPFKTVYLHAMVRDKNGRKMSKSTGNVIDPMEVIHGCLLSDLLKKIDEGNLPEKEVVKAKAAQTLDFPDGIPECGADALRFGLLAYTVQGRDVNLDIKRVVGYRQFCNKIWNAFKFTLTYIKGFEP 771

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BLAST of mRNA_Ecto-sp13_S_contig9828.21475.1 vs. uniprot
Match: A0A7S2CF13_9DINO (Valine--tRNA ligase (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2CF13_9DINO)

HSP 1 Score: 297 bits (761), Expect = 1.890e-97
Identity = 144/187 (77.01%), Postives = 163/187 (87.17%), Query Frame = 0

Query:    6 QDEDVLDTWFSSGLFPFSVFGWPDV-DSEDLKAFFPTTLLETGMDILFFWVARMVMMSLELTDVLPFKTVYLHAMVRDKFGRKMSKTLGNVIDPLEVIYGCDLDTLHKKLEVGNLPAKEMQKAKEGQKMDFPNGIPECGADALRFGLLAYTVQGRDVNLDISRVVGYRNFCNKLWNAVRFALTYLTD 191
            QDEDVLDTWFSSGLFPFSVFGWPDV D++D  AFFPT+LLETG DILFFWVARMVMMS+ LT  LPF T+YLHAMVRD  GRKMSK+LGNVIDP+EVI G  L+ L KKL  GNLP KE++KAK+GQ+ DFP+GIP+CGADALRFGLLAYT+QGR+VNLDI+RVVGYR+FCNK+WNA RF L Y  D
Sbjct:  202 QDEDVLDTWFSSGLFPFSVFGWPDVKDNKDFDAFFPTSLLETGHDILFFWVARMVMMSIGLTGKLPFHTIYLHAMVRDAHGRKMSKSLGNVIDPIEVIEGITLEDLQKKLHEGNLPDKEIEKAKKGQQQDFPDGIPQCGADALRFGLLAYTLQGRNVNLDINRVVGYRHFCNKIWNATRFGLRYFGD 388

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig9828.21475.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig9828.21475.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LT18_ECTSI	1.710e-134	99.02	Valine--tRNA ligase n=1 Tax=Ectocarpus siliculosus...	[more]
A0A7S1VD00_9STRA	2.990e-105	75.98	Valine--tRNA ligase (Fragment) n=1 Tax=Grammatopho...	[more]
I2CNY9_NANGC	2.830e-101	77.34	Valine--tRNA ligase (Fragment) n=1 Tax=Nannochloro...	[more]
A0A6V1PAS2_HETAK	7.630e-100	79.21	Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo T...	[more]
A0A7S4J4F9_9STRA	3.790e-99	74.38	Valine--tRNA ligase n=1 Tax=Odontella aurita TaxID...	[more]
A0A7S1FW38_9STRA	1.090e-98	77.34	Valine--tRNA ligase n=1 Tax=Corethron hystrix TaxI...	[more]
A0A7S0GD30_9STRA	2.850e-98	73.50	Valine--tRNA ligase n=1 Tax=Proboscia inermis TaxI...	[more]
A0A8J9T5C2_PHATR	5.870e-98	70.44	Hypothetical protein n=1 Tax=Phaeodactylum tricorn...	[more]
A0A7S3HI62_9STRA	1.880e-97	78.76	Valine--tRNA ligase (Fragment) n=1 Tax=Spumella el...	[more]
A0A7S2CF13_9DINO	1.890e-97	77.01	Valine--tRNA ligase (Fragment) n=1 Tax=Alexandrium...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002303	Valine-tRNA ligase	PRINTS	PR00986	TRNASYNTHVAL	coord: 7..28 score: 72.22 coord: 39..57 score: 64.33
None	No IPR available	GENE3D	1.10.730.10		coord: 109..202 e-value: 1.5E-23 score: 85.2
None	No IPR available	PANTHER	PTHR11946	VALYL-TRNA SYNTHETASES	coord: 2..197
None	No IPR available	PANTHER	PTHR11946:SF110	VALINE--TRNA LIGASE	coord: 2..197
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 37..56
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 57..204
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..36
None	No IPR available	SUPERFAMILY	52374	Nucleotidylyl transferase	coord: 5..174
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	3.40.50.620		coord: 1..88 e-value: 6.0E-35 score: 122.8
IPR002300	Aminoacyl-tRNA synthetase, class Ia	PFAM	PF00133	tRNA-synt_1	coord: 4..164 e-value: 1.3E-47 score: 162.4

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig9828	contig	Ecto-sp13_S_contig9828:1111..5463 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig9828.21475.1	mRNA_Ecto-sp13_S_contig9828.21475.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig9828 1111..5463 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig9828.21475.1 ID=prot_Ecto-sp13_S_contig9828.21475.1|Name=mRNA_Ecto-sp13_S_contig9828.21475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp
QVCLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDI
LFFWVARMVMMSLELTDVLPFKTVYLHAMVRDKFGRKMSKTLGNVIDPLE
VIYGCDLDTLHKKLEVGNLPAKEMQKAKEGQKMDFPNGIPECGADALRFG
LLAYTVQGRDVNLDISRVVGYRNFCNKLWNAVRFALTYLTDASPPLDLAA
ELIA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002303	Valyl-tRNA_ligase
IPR014729	Rossmann-like_a/b/a_fold
IPR002300	aa-tRNA-synth_Ia