mRNA_Ecto-sp13_S_contig9827.21474.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9827.21474.1 vs. uniprot
Match: A0A6H5JSI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI9_9PHAE) HSP 1 Score: 404 bits (1037), Expect = 1.980e-131 Identity = 205/223 (91.93%), Postives = 210/223 (94.17%), Query Frame = 2
Query: 2 THWTWYATTSYFVVSALSAFLCWRAITVTVASGPVRNSDSAFAAPTSSRPPDRTGSPQPVPAALRFLQLALWSTACISSLIVVAIFWGALYDGDKLTTVDEQAHAFVACIMLLDQFLVADEFKLRYILFPQAFGVIYILFNVGWYYLAPDDDRLIYIILDWEDNTLVACIYAFGAILVGAPLFGLFHLGIFRLREKVYQNRLARSSKAAAEAQAIELKESDQA 670
THWTWYATT+YFVVSALSAFLCWRAI VTVASGPVR+ D AF APTSSRP DRTGSPQPVPAALR LQLALWSTACI SLIVV+IFWGALYDGDKLTTVDEQAH FVACIMLLDQFLVADEFKLRY+LFPQAFGVIYI FNVGWYYLAPDDDRLIYIILDWEDNTL ACIYAFGAILVGAPLFGL H GIFRLRE+VY NRLARSSKAAAEAQAIELKESDQA
Sbjct: 60 THWTWYATTTYFVVSALSAFLCWRAIAVTVASGPVRDGDPAFDAPTSSRPSDRTGSPQPVPAALRHLQLALWSTACIVSLIVVSIFWGALYDGDKLTTVDEQAHVFVACIMLLDQFLVADEFKLRYVLFPQAFGVIYIFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHFGIFRLRERVYHNRLARSSKAAAEAQAIELKESDQA 282
BLAST of mRNA_Ecto-sp13_S_contig9827.21474.1 vs. uniprot
Match: D7G734_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G734_ECTSI) HSP 1 Score: 265 bits (677), Expect = 2.970e-80 Identity = 140/176 (79.55%), Postives = 144/176 (81.82%), Query Frame = 2
Query: 143 SRPPDRTGSPQPVPAALRFLQLALWSTACISSLIVVAIFWGALYDGDKLTTVDEQAHAFVACIMLLDQFLVADEFKLRYILFPQAFGVIYILFNVGWYYLAPDDDRLIYIILDWEDNTLVACIYAFGAILVGAPLFGLFHLGIFRLREKVYQNRLARSSKAAAEAQAIELKESDQA 670
SRP DRTGSPQPVPA LR LQL LWSTACI SLIVV IFWGAL LLDQFLVADEFKLRYILFPQAFGVIY+ FNVGWYYLAPDDDRLIYIILDWEDNTL ACIYAFGAILVGAPLFGL HLG+FRLRE VY NRLAR+SKAAAEAQ+IELKESDQA
Sbjct: 3 SRPYDRTGSPQPVPAVLRHLQLVLWSTACIGSLIVVTIFWGAL---------------------LLDQFLVADEFKLRYILFPQAFGVIYLFFNVGWYYLAPDDDRLIYIILDWEDNTLGACIYAFGAILVGAPLFGLVHLGLFRLRESVYHNRLARTSKAAAEAQSIELKESDQA 157
BLAST of mRNA_Ecto-sp13_S_contig9827.21474.1 vs. uniprot
Match: A0A6H5JMZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ5_9PHAE) HSP 1 Score: 122 bits (306), Expect = 3.810e-27 Identity = 70/202 (34.65%), Postives = 112/202 (55.45%), Query Frame = 2
Query: 2 THWTWYATTSYFVVSALSAFLCWRAITVTVASGPVRNSDSAFAAPTSSRPPDRTGSPQPVPAALRFL---QLALWSTACISSLIVVAIFWGALYDGDKLTTVDEQAHAFVACIMLLDQFLVADEFKLRYILFPQAFGVIYILFNVGWYYLAPDDDRLIYIILDWEDNTLVACIYAFGAILVGAPLFGLFHLGIFRLREKVYQ 598
T+W WY YF+VS +A+ + + GPVR + + P R QP+ + R L Q+ W+ AC+ SL++V +FW AL+D LT+ D AH +A +M +DQ LVA +F+ + +L F ++Y+ FN+ ++ AP+D+R+IY +DW ++ + +A V PL GL H +FRLRE +Y+
Sbjct: 64 TYWGWYMAAIYFLVSTATAYSFLGS--PMASDGPVRGTHAVA--------PHRGNRNQPLSSNRRALLGFQVFSWNVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPVMAIDQLLVATKFERKQMLASFLFSIVYVAFNIVFFLTAPEDERVIYGQMDWGESVGNSAAFAAVVTFVLVPLGGLIHYCVFRLREYIYE 255
BLAST of mRNA_Ecto-sp13_S_contig9827.21474.1 vs. uniprot
Match: D7G733_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G733_ECTSI) HSP 1 Score: 123 bits (308), Expect = 1.210e-26 Identity = 68/196 (34.69%), Postives = 106/196 (54.08%), Query Frame = 2
Query: 8 WTWYATTSYFVVSALSAFLCWRAITVTVASGPVRNSDSAFAAPTSSRPPDRTGSPQPVPAALRFLQLALWSTACISSLIVVAIFWGALYDGDKLTTVDEQAHAFVACIMLLDQFLVADEFKLRYILFPQAFGVIYILFNVGWYYLAPDDDRLIYIILDWEDNTLVACIYAFGAILVGAPLFGLFHLGIFRLREKVY 595
WT T+YFV+S +S+ LC ++ R + RPP G+ PVP R+LQ W CISS++V+++FW +Y+ D T + +A +MLLDQFL+A E K +Y F V+YI +NV +YY +DR+ + + DW++ AC++ F + G P F H+ ++RLRE++Y
Sbjct: 80 WTHMLATAYFVISLISSLLCMAYLS--------REKPAPVEEGKPKRPPPVKGTRSPVPCYFRWLQHISWVLTCISSMVVLSVFWMTIYESDVPVTSVYVSSTILALLMLLDQFLIATEMKFKYAWLGLYFFVVYIFYNVIYYYEHNVEDRVTFEVFDWDERPGRACLWVFLILAFGVPGFTALHVFVYRLRERMY 267
BLAST of mRNA_Ecto-sp13_S_contig9827.21474.1 vs. uniprot
Match: D7G735_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G735_ECTSI) HSP 1 Score: 113 bits (282), Expect = 6.400e-25 Identity = 62/170 (36.47%), Postives = 98/170 (57.65%), Query Frame = 2
Query: 98 GPVRNSDSAFAAPTSSRPPDRTGSPQPVPAALRFL---QLALWSTACISSLIVVAIFWGALYDGDKLTTVDEQAHAFVACIMLLDQFLVADEFKLRYILFPQAFGVIYILFNVGWYYLAPDDDRLIYIILDWEDNTLVACIYAFGAILVGAPLFGLFHLGIFRLREKVYQ 598
GPVR + + P R QP+ + R L Q+ W+ AC+ SL++V +FW AL+D LT+ D AH +A IM +DQ LVA +F+ + +L +F ++Y+ FN+ ++ AP+D+R+IY +DW ++ + +A V PL GL H +FRLRE +Y+
Sbjct: 5 GPVRGTHAVT--------PHRGNRNQPLSSNRRALLGFQVFSWNVACVGSLVIVTVFWVALFDNTPLTSTDVNAHILIAPIMAIDQLLVATKFERKQMLASFSFSIVYVAFNIIFFLTAPEDERVIYGQMDWGESVGNSAAFAAVVAFVLVPLGGLIHYCVFRLREYIYE 166 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9827.21474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9827.21474.1 >prot_Ecto-sp13_S_contig9827.21474.1 ID=prot_Ecto-sp13_S_contig9827.21474.1|Name=mRNA_Ecto-sp13_S_contig9827.21474.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp MLLDQFLVADEFKLRYILFPQAFGVIYILFNVGWYYLAPDDDRLIYIILDback to top mRNA from alignment at Ecto-sp13_S_contig9827:1397..5638- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9827.21474.1 ID=mRNA_Ecto-sp13_S_contig9827.21474.1|Name=mRNA_Ecto-sp13_S_contig9827.21474.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9827:1397..5638- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9827:1397..5638- >mRNA_Ecto-sp13_S_contig9827.21474.1 ID=mRNA_Ecto-sp13_S_contig9827.21474.1|Name=mRNA_Ecto-sp13_S_contig9827.21474.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9827:1397..5638- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |