mRNA_Ecto-sp13_S_contig9823.21472.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9823.21472.1
Unique NamemRNA_Ecto-sp13_S_contig9823.21472.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9823.21472.1 vs. uniprot
Match: D7FSM5_ECTSI (Pleckstrin homology (PH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSM5_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 4.770e-66
Identity = 144/183 (78.69%), Postives = 153/183 (83.61%), Query Frame = 1 
Query:    4 LAQTVASSIAMPGRWSLPNGXXXXXXRLSLAS-HATSGGGSSPRSARSSFTRRAGVQVWVPVHGRTEMHEISLRGLPAGSTSGLFKVQRGGASXXXXXXXXXXXXXASGDTKGGGELPSNGSKKKPLATTFPGARSASARLAPSASRQTTRSPSPGRHHEGEWTGGTVIAASXXXGAARGTDG 549
            LAQTVA+S+AMPGRWSLPNGXXXXXX       H      SSPRSA+SSF+RRAGVQVWVPVHGRTEMHEISLRGLPAGSTSGLFKVQ GGAS XXXXXXXXX   ASGDTKGGG+LP NG K+KPLATTFPGARSA+ RLA S SRQTTRSPSPGRH+EG+W GGTVIAA    G ARGT G
Sbjct:  438 LAQTVAASMAMPGRWSLPNGXXXXXXXXXXXXXHXXXXXXSSPRSAQSSFSRRAGVQVWVPVHGRTEMHEISLRGLPAGSTSGLFKVQEGGASNXXXXXXXXXKY-ASGDTKGGGDLPPNGPKRKPLATTFPGARSATTRLAASTSRQTTRSPSPGRHYEGDWVGGTVIAAGGGGGTARGTYG 619
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BLAST of mRNA_Ecto-sp13_S_contig9823.21472.1 vs. uniprot
Match: A0A6H5JHX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX3_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 7.370e-44
Identity = 98/116 (84.48%), Postives = 99/116 (85.34%), Query Frame = 1 
Query:  202 MHEISLRGLPAGSTSGLFKVQRGGASXXXXXXXXXXXXXASGDTKGGGELPSNGSKKKPLATTFPGARSASARLAPSASRQTTRSPSPGRHHEGEWTGGTVIAASXXXGAARGTDG 549
            MHEISLRGLPAGSTSGLFKVQ GGAS    XXXXXX   ASGDTKGGGELPSNGS KKPLATT PGARSAS RLAPSASRQTTRSPS GRHHEG+W GGTVIAA    GAARGTDG
Sbjct:    1 MHEISLRGLPAGSTSGLFKVQEGGASNDDLXXXXXXKH-ASGDTKGGGELPSNGSNKKPLATTLPGARSASTRLAPSASRQTTRSPSLGRHHEGDWVGGTVIAAGGRGGAARGTDG 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9823.21472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSM5_ECTSI4.770e-6678.69Pleckstrin homology (PH) domain-containing protein... [more]
A0A6H5JHX3_9PHAE7.370e-4484.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9823contigEcto-sp13_S_contig9823:752..3015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score231.5
Seed ortholog evalue3.2e-58
Seed eggNOG ortholog2880.D7FSM5
Model size550
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
EggNOG OGsCOG5422@1,KOG4424@2759
Ec32 ortholog descriptionDbl homology (DH) domain
Ec32 orthologEc-04_000580.1
Cds size549
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464245.7960691-CDS-Ecto-sp13_S_contig9823:751..10301681464245.7960691-CDS-Ecto-sp13_S_contig9823:751..1030Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9823 752..1030 -
1681464245.816342-CDS-Ecto-sp13_S_contig9823:2188..22871681464245.816342-CDS-Ecto-sp13_S_contig9823:2188..2287Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9823 2189..2287 -
1681464245.8291035-CDS-Ecto-sp13_S_contig9823:2844..30151681464245.8291035-CDS-Ecto-sp13_S_contig9823:2844..3015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9823 2845..3015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9823.21472.1prot_Ecto-sp13_S_contig9823.21472.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9823 752..3015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9823.21472.1

>prot_Ecto-sp13_S_contig9823.21472.1 ID=prot_Ecto-sp13_S_contig9823.21472.1|Name=mRNA_Ecto-sp13_S_contig9823.21472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
MLAQTVASSIAMPGRWSLPNGGGGGGGRLSLASHATSGGGSSPRSARSSF
TRRAGVQVWVPVHGRTEMHEISLRGLPAGSTSGLFKVQRGGASNDDLNNN
DDDDKHASGDTKGGGELPSNGSKKKPLATTFPGARSASARLAPSASRQTT
RSPSPGRHHEGEWTGGTVIAASGGGGAARGTDG
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mRNA from alignment at Ecto-sp13_S_contig9823:752..3015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9823.21472.1 ID=mRNA_Ecto-sp13_S_contig9823.21472.1|Name=mRNA_Ecto-sp13_S_contig9823.21472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9823:752..3015- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGCACAGACGGTGGCCTCTTCAATAGCCATGCCGGGTCGATGGTC
GCTACCGAATGGTGGCGGTGGCGGCGGCGGGAGATTATCCCTGGCGTCTC
ACGCTACTAGCGGTGGTGGCTCGTCTCCTCGGTCGGCGCGGTCTTCCTTT
ACGAGACGGGCTGGTGTTCAGGTGCGGTTGGTTTGAAGATGTCCCTGTTG
TTGCTGTTGTTGTTGTTGTTGCTGTTGTTGTTGTTGTTAATGATGCTGCT
GCTGCTGCTGCTGCTGCTACTGCTGCTGTTGTTACTGTTGCTGTTGCTAT
CGTCGTCATTGCTGTCGCGGCCATGCACGGGTGTTTCAGCTTGGCTTGTA
ATAGTACCACATGCGTATTGTCCAGAGCGCGCTGACGAGCTGTCACATTT
TAGTTTCTCGTCGAAGAAGTCGCGAGACACAAGTCCTACCTCTTTCCAAT
CGGCACCTTTCCCCATGTGTTCTGCACGTTTTCGACAATGTTGGTCCCTC
ACGTGGTAAGCGGACGGTTGCGTTTGTCAACCGCAGAACGAAAAGACTAC
CGGTGCATAGCGATATCTGTCTACTGTTTTCACCCGTGCATGTTTTCGAT
ATTGTTGGTTCCTCGCGTGGTAAGCTATCGGTTGTATTGAACCAGTTTAC
CGTAGAACGAAGATACAACCACACTATGTACTACCGGTGCATGTCGATAA
CTGCTGTCTCCTGTGTGCACTTGTGTAGGTGTGGGTGCCGGTACACGGGC
GTACAGAGATGCATGAGATCTCCTTGCGAGGCCTCCCCGCCGGTTCCACA
TCGGGCCTCTTCAAGGTCCAGAGAGGGGTGAGACCCGTGCCGGGGCCCCG
TGATTTATTATTTTCTCTGTGCGGACTACCCGTACAACATGTTGGTTTTA
GTATACTCGTGTTGGGAAAGGTCCCCTCTTGTTCAACCTCTGATTGTTGT
ATGTTGTTGCTGATTATATCGTGGCAAAACACGAAAGAGATGGCATAATT
TTATCGTCGCCAAGAGGTCATGATATGTCTTCATGGACTCCAGCTGACAC
CTGAGCTCCGACTGTGGACGGCTTGCGTCACGGGTTCCCACAGCTTTGTG
GTAGTCCGTTACCGAGAGCACATCGGTTATGTTTTCGTCGCGATATTTGA
GCTAAACCCTGACCCTATCCCTAACCCCATCCCTACCGAGGAGACGGCCG
AGAATAGAACAAGCGAGGCCTCACCTGGAGAGGATTCCCCTGCCTATGCC
AGATTGTTGCGCATGGAAGAGTTATGCTTCCATCAAAAGCAGGTCTCCTG
ATTTCCAAAAGGGTCCCGAAATCTTCCAACTAATGTCCTTCCCGGCTTTC
GCGTGCGTGCGCTTGGACTCTGCCCTTCCGACACAACTTTTTGTCGTCTG
CACATCATCCACAATTTTGTCACCTGTTGTTCGTGCAGCAACGTCAGTTG
CAACGTTTTCGGTGTCCGCCCAGACGGCTTTGTGGACTGTATGTTCTTTG
TTTTAATAGTACCGTCGAGGTCTGGCAAGAAGCGACGATCGCTGTCCATT
CTCACGTTCTTGTTTGACTCTGCTCGCGTGTTGCCTTGAAAATACGTGTG
TTCCCCCTGAAAGAAGAGGGCGTATGTAGAAAATGCTGGATATGTTGTGA
ACGTCCTTTACTACAACGTGGGGGCGAAGTTCGCTGAAAGTCCTCGACGA
AAACGCACAACACCCACAAAACATTCGACGGGCGGGCTCCCTCTCTTGCG
ATAGGGCTCCTCCTCGCGAAGTTCCCCCTCCTTGCGATAACGCTTCTTTG
TCTTGCGATGCAGCTGTTTCTGCTTGCGCTGAGACCCCTTCTTTGCGGTA
CGGTCTTCCTCTTCCGACAAGCCAACTCTGGAGGAATGAGAGCGTTGCTG
CTGTTGTTGACCGTCGTTGCTGCTATTCTGAGTTCTACACCCTACACACC
TCTCCCGCGCTTGCTTCCGTTTTTTTCCACTGGAGGGGGCAAGTAACGAC
GACCTCAACAACAACGACGACGACGACAAACACGCCTCCGGTGACACCAA
AGGTGGCGGCGAGCTGCCCTCCAACGGCTCCAAGAAGAAGCCGTTAGCAA
CGACCTTCCCGGGTGCGAGGAGCGCAAGCGCAAGACTAGCCCCGTCCGCC
AGTCGGCAAACGACCAGATCACCTTCTCCCGGACGCCACCACGAGGGGGA
GTGGACAGGGGGCACCGTGATAGCGGCTAGTGGGGGGGGCGGGGCTGCCC
GCGGCACAGATGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9823:752..3015-

>mRNA_Ecto-sp13_S_contig9823.21472.1 ID=mRNA_Ecto-sp13_S_contig9823.21472.1|Name=mRNA_Ecto-sp13_S_contig9823.21472.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9823:752..3015- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGCACAGACGGTGGCCTCTTCAATAGCCATGCCGGGTCGATGGTC
GCTACCGAATGGTGGCGGTGGCGGCGGCGGGAGATTATCCCTGGCGTCTC
ACGCTACTAGCGGTGGTGGCTCGTCTCCTCGGTCGGCGCGGTCTTCCTTT
ACGAGACGGGCTGGTGTTCAGGTGTGGGTGCCGGTACACGGGCGTACAGA
GATGCATGAGATCTCCTTGCGAGGCCTCCCCGCCGGTTCCACATCGGGCC
TCTTCAAGGTCCAGAGAGGGGGGGCAAGTAACGACGACCTCAACAACAAC
GACGACGACGACAAACACGCCTCCGGTGACACCAAAGGTGGCGGCGAGCT
GCCCTCCAACGGCTCCAAGAAGAAGCCGTTAGCAACGACCTTCCCGGGTG
CGAGGAGCGCAAGCGCAAGACTAGCCCCGTCCGCCAGTCGGCAAACGACC
AGATCACCTTCTCCCGGACGCCACCACGAGGGGGAGTGGACAGGGGGCAC
CGTGATAGCGGCTAGTGGGGGGGGCGGGGCTGCCCGCGGCACAGATGGA
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