mRNA_Ecto-sp13_S_contig9818.21469.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9818.21469.1
Unique NamemRNA_Ecto-sp13_S_contig9818.21469.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: A0A6H5L7Y5_9PHAE (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y5_9PHAE)

HSP 1 Score: 819 bits (2116), Expect = 2.270e-293
Identity = 465/551 (84.39%), Postives = 482/551 (87.48%), Query Frame = 1 
Query:    1 GSDWNIIKRVFVQADGEFWTAGLPPSASAANXXXXXXXXXXXXXXXPTSGASDGSGSNAPPARGKTHAGGADRVVSLEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDLKFKPKAAELGEPIAVLDLHPGDMMYIPRGWPHEAAVNGTAARPSGGRGASPSSSAARGPSLHLTFGVETALSGTYESLLHHALEVAAVEHPLLLGLSPRGGEESDKQSADDSDEDNQGRKGGDAEVPWLQLLHLWVHDVASRDARLRKAVPLAPLFSASSEGRPTPPTATKDNSDAGSIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAVLQEFQVSLEACAGSAAADDAHGVGGGASSTLALLDSLLENEQLYRVREMFFVGDGELRGRGGXXXXXXXXXXXXXXXXEDEDAADPVLSPRMSEETEWSRATLEAFDRTRFSSSSLREKMEGFRSVASPEGALRRMVVASSRRARERDEVTERDLARCGQGPPSRGGV 1653
            GSDWNIIKRVFVQADGEFWTAGLPPS  A +                TSGA+DG GSN PPA GKTHAGGADRVV LEEAR AFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPD+KFKPKAA LGEPIAVLDLHPGDMMYIPRGWPHEAAVNGTAARP+GGRGASPS SAARGPSLHLTFGVETALSGTYESLLHHALEVAAVEHPLL GLSPR G  SDK+SA++SDEDNQGR GG+AEVPWLQLLHLWVHDVASRDARLRKAVPLAPLFSASSEGRP PPTA K + DAGSIDXXXXXXXXXXX                      P AVLQEF++SLEACAGSAAADDA GVGG ASSTLALLDSLLENEQL+RVREMFFVGDGELRGRGG    XXXXXXXXXXXX  EDAAD VLS RMSE+TEWSRATLEAFDRTRF SSSLRE+MEGFR+VASP+GALRRMVVASSRRARERD+VTERDLARCGQGPPSRGGV
Sbjct:   40 GSDWNIIKRVFVQADGEFWTAGLPPSTLATDKQERRSSSSSSR----TSGATDGWGSNTPPAPGKTHAGGADRVVFLEEARKAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDMKFKPKAAALGEPIAVLDLHPGDMMYIPRGWPHEAAVNGTAARPAGGRGASPSRSAARGPSLHLTFGVETALSGTYESLLHHALEVAAVEHPLLFGLSPREGGRSDKRSANESDEDNQGRMGGNAEVPWLQLLHLWVHDVASRDARLRKAVPLAPLFSASSEGRPAPPTAAKGSPDAGSIDXXXXXXXXXXXEGVCTASAQRQEHQTAAV----PPAVLQEFKISLEACAGSAAADDAPGVGGAASSTLALLDSLLENEQLHRVREMFFVGDGELRGRGGDETSXXXXXXXXXXXXXXEDAADAVLSSRMSEDTEWSRATLEAFDRTRFLSSSLREEMEGFRNVASPQGALRRMVVASSRRARERDKVTERDLARCGQGPPSRGGV 582
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BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: D7G4T0_ECTSI (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T0_ECTSI)

HSP 1 Score: 782 bits (2019), Expect = 7.420e-278
Identity = 446/555 (80.36%), Postives = 457/555 (82.34%), Query Frame = 1 
Query:    1 GSDWNIIKRVFVQADGEFWTAGLPPSASAANXXXXXXXXXXXXXXXPTSGASDGSGSNAPPARGKTHAGGADRVVSLEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDLKFKPKAAELGEPIAVLDLHPGDMMYIPRGWPHEAAVNGTAARPSGGRGASPSSSAARGPSLHLTFGVETALSGTYESLLHHALEVAAVEHPLLLGLSPRGGEESDKQSADDSDEDNQGRKGGDAEVPWLQLLHLWVHDVASRDARLRKAVPLAPLFSASSEGRPTPPTATKDNSDAGSIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAVLQEFQVSLEACAGSAAADDAHGVGGGASSTLALLDSLLENEQLYRVREMFFVGDGELRGRGGXXXXXXXXXXXXXXXX--EDEDAADPVLSPRMSEETEWSRATLEAFDRTRFSSSSLREKMEGFRSVASPEGALRRMVVASSRRARERDEVTERDLARCGQGPPSRGGVEV 1659
            GSDWNIIKRVFVQAD                                     DG GSN PPA GKTHAGGADRVVSLEEAR AFHRGGFSVVINRLQRRWRGVLRASRALE VLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILY EMVTMPRPDLKFKPKAAELGEPIAVLDL+PGDMMYIPRGWPHEAAVNGTAARP GGRGASPSSS ARGPSLH+TFGVETALSGTYESLLHHALEVAAVEHPLL GL P GGEESDK+SA+DSDEDNQGR GGDAE+PWLQLLHLWVHDVASRDARLRKAVPLAPLF ASSEGRP P TA KDNSDAGSID                                 P AVLQEF++SLEACAGSAAADDA GVGG ASSTLALLDSLL+ EQLYRVREMFFVGDGELRG GGXXXXXXXXXXXXXXXX  EDEDA + VLS RMSEETEWSRATLEAFDRTRFSSSSLREKMEGFR VASPEGALRRMVVASSRRARERDE+TERDLARCGQGPP+RGGV V
Sbjct:  119 GSDWNIIKRVFVQAD-------------------------------------DGPGSNVPPAPGKTHAGGADRVVSLEEARKAFHRGGFSVVINRLQRRWRGVLRASRALEHVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYHEMVTMPRPDLKFKPKAAELGEPIAVLDLYPGDMMYIPRGWPHEAAVNGTAARPGGGRGASPSSSTARGPSLHVTFGVETALSGTYESLLHHALEVAAVEHPLLFGLLPGGGEESDKRSANDSDEDNQGRMGGDAEIPWLQLLHLWVHDVASRDARLRKAVPLAPLFFASSEGRPAPATAAKDNSDAGSIDDDNINVAGGRREGVCTASAQRQEHQTVA-----PSAVLQEFKISLEACAGSAAADDAPGVGGAASSTLALLDSLLDTEQLYRVREMFFVGDGELRGHGGXXXXXXXXXXXXXXXXXXEDEDAFEAVLSSRMSEETEWSRATLEAFDRTRFSSSSLREKMEGFRKVASPEGALRRMVVASSRRARERDEITERDLARCGQGPPNRGGVAV 631
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BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: W7TVJ2_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVJ2_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.000e-32
Identity = 81/180 (45.00%), Postives = 103/180 (57.22%), Query Frame = 1 
Query:  214 DRVVSLEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDLKFKPKAAELGEPIAVLDLHPGDMMYIPRGWPHEAAVNGTAARPSGGRGASPSSSAARGPSLHLTFGVETALSGTYESLLHHALEV 753
            D     E A  AF RG +S+VIN ++ +  G  R + A E  LG   + N Y TPP SQ FEAHFDWMD  ++Q+ GSK W LYD +V  PRPD++FKP   ++GEP     L PGD++Y+P G  HEA          GG G S         SLHLT G+ET + G++ESLL   L V
Sbjct:  142 DDSTDAEVAHAAFSRG-YSLVINNIEDKLYGTSRLALAFEGELGYRTSINCYFTPPGSQAFEAHFDWMDAFILQVEGSKRWRLYDALVEQPRPDMQFKPSLHDIGEPYIDFVLEPGDLLYLPSGTIHEALNEND-----GGLGNS---------SLHLTVGIETTVLGSWESLLLEVLTV 306
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BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: A0A7S0VDM9_9CRYP (Bifunctional lysine-specific demethylase and histidyl-hydroxylase (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VDM9_9CRYP)

HSP 1 Score: 125 bits (315), Expect = 9.110e-29
Identity = 77/201 (38.31%), Postives = 104/201 (51.74%), Query Frame = 1 
Query:    1 GSDWNIIKRVFVQADGEFWTAGLPPSASAANXXXXXXXXXXXXXXXPTSGASDGSGSNAPPARGKTHAGGADRVVSLEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDLKFKPKAAEL-GEPIAVLDLHPGDMMYIPRGWPHEA 600
            GSD+ ++KR     DGE+W+ G P                                       G +H   A R +         H  GF++V+N L  R RGV R +R+LE   G  V ANLY+TPP SQGFE H+D M+ IV+Q++GSK W LYD +V +PRP+ +FKP  A++ G+    + L  GD +YIPRGW HEA
Sbjct:  106 GSDYRLVKRT-KGPDGEWWSGGAP---------------------------------------GDSHDSAAIREL--------VHEKGFTLVLNHLDMRVRGVARLARSLEKQTGLAVQANLYLTPPGSQGFEVHWDPMETIVLQVSGSKLWHLYDPLVPLPRPEQRFKPTGAQVEGQAKRSVMLEAGDTLYIPRGWLHEA 258
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: A0A7R9VM90_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VM90_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.570e-25
Identity = 95/273 (34.80%), Postives = 132/273 (48.35%), Query Frame = 1 
Query:  214 DRVVSLEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLG-QPVNANLYMTPP-------------------QSQGFEAHFDWMDGIVVQLTGSKTWILYDE-MVTMPRPDLKFKPKAAELGEPIAVLD------LHPGDMMYIPRGWPHEAAVNGTAA---------RPSGGRGASPSSSAARGPSLHLTFGVETALSGTYESLLHHALEVAAVEHPLLLGLSPRGGEESDKQSADDSDEDNQGRKGGDAEVPWLQLLHLWVHDVASR 924
            +R ++ + A   F  GGFS+V+N +QRRW  +   SR +++ +G   V+ NLY TP                    Q  GFE+H+DWMD IVVQ++GSK W +  E +V +   DLK KP   E+ E I          L PGD MYIPRG+ H A+  G  A           +   G    S+  + PSLHLTFG+E     TYE+LL HA+ +              G  E+ KQ A  S      + G + ++ W  +L L + DVA R
Sbjct:  259 ERSITSDHAAQLFDLGGFSLVVNAMQRRWGNIGAISRVMQEEVGCNYVSCNLYATPSVVEKRPPRPGEEPRPKMVAQRSGFESHWDWMDVIVVQISGSKLWSVATEPLVYLSTQDLKRKPTIEEMKEYIGDKGRYREFLLRPGDAMYIPRGFLHNASTVGPDAGLVNALFNGSEADNDGDDNDSTLWQEPSLHLTFGIEHTCMTTYEALLQHAMHLF-------------GNTEAGKQVAVSSK-----KCGTEQDILWHHMLTLAISDVARR 513
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: A0A0H4WS94_9DELT (Cupin 4 family protein n=1 Tax=Myxococcus hansupus TaxID=1297742 RepID=A0A0H4WS94_9DELT)

HSP 1 Score: 117 bits (292), Expect = 1.020e-24
Identity = 76/189 (40.21%), Postives = 104/189 (55.03%), Query Frame = 1 
Query:  229 LEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDLKFKPKAAELGEPIAVLDLHPGDMMYIPRGWPHEAAVNGTAARPSGGRGASPSSSAARGPSLHLTFGVETALSGTYESLLHHALEVAAVEHPLLLGLSPR 795
            LE+ + A+ R GF++VINRL R W  V R   A+E+ L  PV ANLYMTPP +QGF+AHFD MD  V+Q+ G+K W +      +P PD      ++ L   +   +L  G+++YIPRG+ HEA                    AAR  S+HLT G++     T+E LL  A+ VA  +  L  GL PR
Sbjct:   80 LEQVQAAW-REGFTLVINRLGRFWEPVGRFCAAVEEELHHPVGANLYMTPPGAQGFKAHFDVMDAFVLQVEGAKVWQVRGPQRVLPLPDEHTTELSSPLPPVLMEHELKSGEVLYIPRGFIHEAR-------------------AAREHSVHLTLGLQAI---TWEELLRAAIAVARRDERLRRGLPPR 245
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: A0A7S1Y1A8_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y1A8_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.650e-24
Identity = 71/168 (42.26%), Postives = 96/168 (57.14%), Query Frame = 1 
Query:  214 DRVVSLEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQP-VNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDE-MVTMPRPDLKFKPKAAELGEP--IAVLDLHPGDMMYIPRGWPHEAAVNGTAARPSGGRGASPSSSAARGPSLHLTFGVET 705
            +RV +LE+A +A H  GF++V+++LQ  W  +   +R LE    Q  V+ NLYMTPP   GFE+H+DWMD IV+QL G KTW +  E  V +   +LK+KP  AEL E        L+PGD++YIPRG  H A+  G                     SLHLTFG+E+
Sbjct:  156 ERVSTLEDAVMAHH-AGFTLVVDKLQNHWPSISEFARELEVETQQTHVSCNLYMTPPNRSGFESHWDWMDVIVLQLAGQKTWSVASEPTVYLSNEELKYKPSLAELNETSWYDTFVLNPGDVLYIPRGHLHNASTVGFLQE----------------TSLHLTFGIES 306
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: A0A7S1U4K8_9STRA (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4K8_9STRA)

HSP 1 Score: 110 bits (275), Expect = 8.610e-24
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:  262 GFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDLKFKPKAAELGEPIAVLDLHP 558
            GFSVV+N LQ R   V RA+  LE  LG  VN NLY+TPP +Q FEAH DWMDG +VQLTG K W +YD +V  PR DL++KP+ ++LG   A  ++HP
Sbjct:  131 GFSVVLNALQLRDATVQRAALGLEAALGVRVNVNLYLTPPGAQAFEAHQDWMDGFIVQLTGRKAWRVYDRLVDRPRADLRYKPRQSQLG---AAEEVHP 226
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: A0A0G4IJ20_PLABS (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IJ20_PLABS)

HSP 1 Score: 111 bits (277), Expect = 8.790e-23
Identity = 71/187 (37.97%), Postives = 101/187 (54.01%), Query Frame = 1 
Query:  247 AFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQ-PVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEM--VTMPRPDLKFKPKAAELGEPIAV-LDLHPGDMMYIPRGWPHEAAVNGTAARPSGGRGASPSSSAARGPSLHLTFGVETALSGTYESLLHHALEVA--AVEHPLLLGLS 789
            AF  GGF++++NR  RRWR +      +   +   P+NANLY+TP  +QGFEAH DWM+ IV+QL G K W LY +   V +P P++  KP ++ L +  A+ L L PGD++YIP G  HEA+   T                    SLH+T G+E     T+  L+  A+     A+  P LL L+
Sbjct:   38 AFSLGGFTLIVNRAHRRWRPIASICELVGRTIASFPINANLYLTPKLAQGFEAHQDWMEVIVIQLEGMKHWRLYPDFPSVRLPFPEMIVKPSSSSLTKERALDLTLSPGDVLYIPAGVVHEASTGTTDTI-----------------SLHVTIGIEIHPVDTWLGLMLSAVRFMSNAMSRPTLLCLA 207
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Match: Q091R3_STIAD (Cupin 4 family protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) TaxID=378806 RepID=Q091R3_STIAD)

HSP 1 Score: 109 bits (273), Expect = 3.090e-22
Identity = 69/189 (36.51%), Postives = 99/189 (52.38%), Query Frame = 1 
Query:  229 LEEARVAFHRGGFSVVINRLQRRWRGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSKTWILYDEMVTMPRPDLKFKPKAAELGEPIAVLDLHPGDMMYIPRGWPHEAAVNGTAARPSGGRGASPSSSAARGPSLHLTFGVETALSGTYESLLHHALEVAAVEHPLLLGLSPR 795
            LE+ + A+ R G+++VIN++ + W  V R   A+E+ L  PV  NLYMTPP +QGF+AHFD MD  V+Q+ GSK W +    VT+P PD      +  L   +   +L  GD++YIPRG+ HEA                     A+  S+HLT G++     T+  L   A+  A  +     GL PR
Sbjct:   80 LEQVQAAW-REGYTIVINKVGQFWEPVGRFCAAVEEELHHPVGVNLYMTPPGAQGFKAHFDIMDAFVLQVEGSKVWQVRGPQVTLPLPDEHTATSSESLPPVLLEQELKRGDVLYIPRGFVHEART-------------------AQTHSVHLTLGLQAV---TWSDLFVAAIAAARRDERFRKGLPPR 245
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9818.21469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7Y5_9PHAE2.270e-29384.39Bifunctional lysine-specific demethylase and histi... [more]
D7G4T0_ECTSI7.420e-27880.36Bifunctional lysine-specific demethylase and histi... [more]
W7TVJ2_9STRA3.000e-3245.00Bifunctional lysine-specific demethylase and histi... [more]
A0A7S0VDM9_9CRYP9.110e-2938.31Bifunctional lysine-specific demethylase and histi... [more]
A0A7R9VM90_9STRA5.570e-2534.80Bifunctional lysine-specific demethylase and histi... [more]
A0A0H4WS94_9DELT1.020e-2440.21Cupin 4 family protein n=1 Tax=Myxococcus hansupus... [more]
A0A7S1Y1A8_9STRA4.650e-2442.26Bifunctional lysine-specific demethylase and histi... [more]
A0A7S1U4K8_9STRA8.610e-2455.56Bifunctional lysine-specific demethylase and histi... [more]
A0A0G4IJ20_PLABS8.790e-2337.97Bifunctional lysine-specific demethylase and histi... [more]
Q091R3_STIAD3.090e-2236.51Cupin 4 family protein n=1 Tax=Stigmatella auranti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9818contigEcto-sp13_S_contig9818:589..6015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score792.0
Seed ortholog evalue1.8e-226
Seed eggNOG ortholog2880.D7G4T0
Model size1884
KEGG koko:K16914
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.histone demethylase activity (H3-K4 specific)
EggNOG OGsKOG3706@1,KOG3706@2759
Ec32 ortholog descriptionSecreted cupin superfamily protein
Ec32 orthologEc-20_000490.1
EC1.14.11.27
Cds size1662
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9818.21469.1prot_Ecto-sp13_S_contig9818.21469.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9818 811..6015 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464245.369926-UTR-Ecto-sp13_S_contig9818:588..8101681464245.369926-UTR-Ecto-sp13_S_contig9818:588..810Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9818 589..810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464245.3854334-CDS-Ecto-sp13_S_contig9818:810..10241681464245.3854334-CDS-Ecto-sp13_S_contig9818:810..1024Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9818 811..1024 -
1681464245.3991587-CDS-Ecto-sp13_S_contig9818:2348..28551681464245.3991587-CDS-Ecto-sp13_S_contig9818:2348..2855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9818 2349..2855 -
1681464245.4130151-CDS-Ecto-sp13_S_contig9818:3257..33911681464245.4130151-CDS-Ecto-sp13_S_contig9818:3257..3391Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9818 3258..3391 -
1681464245.428514-CDS-Ecto-sp13_S_contig9818:4247..44731681464245.428514-CDS-Ecto-sp13_S_contig9818:4247..4473Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9818 4248..4473 -
1681464245.442102-CDS-Ecto-sp13_S_contig9818:4699..48591681464245.442102-CDS-Ecto-sp13_S_contig9818:4699..4859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9818 4700..4859 -
1681464245.4547892-CDS-Ecto-sp13_S_contig9818:5594..60151681464245.4547892-CDS-Ecto-sp13_S_contig9818:5594..6015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9818 5595..6015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9818.21469.1

>prot_Ecto-sp13_S_contig9818.21469.1 ID=prot_Ecto-sp13_S_contig9818.21469.1|Name=mRNA_Ecto-sp13_S_contig9818.21469.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=554bp
GSDWNIIKRVFVQADGEFWTAGLPPSASAANKQERRSSSPSSSSSSPTSG
ASDGSGSNAPPARGKTHAGGADRVVSLEEARVAFHRGGFSVVINRLQRRW
RGVLRASRALEDVLGQPVNANLYMTPPQSQGFEAHFDWMDGIVVQLTGSK
TWILYDEMVTMPRPDLKFKPKAAELGEPIAVLDLHPGDMMYIPRGWPHEA
AVNGTAARPSGGRGASPSSSAARGPSLHLTFGVETALSGTYESLLHHALE
VAAVEHPLLLGLSPRGGEESDKQSADDSDEDNQGRKGGDAEVPWLQLLHL
WVHDVASRDARLRKAVPLAPLFSASSEGRPTPPTATKDNSDAGSIDDDDD
DDDVAGGRREGVCTASAQRQEQHQTAAAPPRAVLQEFQVSLEACAGSAAA
DDAHGVGGGASSTLALLDSLLENEQLYRVREMFFVGDGELRGRGGGESSG
GYAAAAAQRGGEDEDAADPVLSPRMSEETEWSRATLEAFDRTRFSSSSLR
EKMEGFRSVASPEGALRRMVVASSRRARERDEVTERDLARCGQGPPSRGG
VEV*
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mRNA from alignment at Ecto-sp13_S_contig9818:589..6015-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9818.21469.1 ID=mRNA_Ecto-sp13_S_contig9818.21469.1|Name=mRNA_Ecto-sp13_S_contig9818.21469.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5427bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9818:589..6015- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGTGACTGGAACATCATCAAGCGGGTGTTCGTGCAAGCTGACGGTGA
GTTCTGGACGGCCGGACTCCCCCCGTCGGCCTCGGCAGCGAACAAGCAGG
AAAGACGCTCCTCCTCCCCCTCCTCCTCCTCCTCGTCCCCTACAAGCGGT
GCTTCAGACGGTTCGGGCAGCAACGCACCGCCGGCACGAGGAAAGACGCA
TGCCGGGGGGGCAGACAGGGTAGTGTCTCTGGAGGAAGCTCGCGTGGCTT
TTCACCGAGGAGGGTTTTCCGTGGTCATCAACCGACTGCAGAGGAGGTGG
CGCGGCGTGTTGAGGGCTTCGCGGGCGCTGGAAGATGTGCTGGGGCAGCC
CGTGAACGCGAACCTGTACATGACCCCGCCCCAAAGCCAGGGATTCGAGG
CGCACTTCGACTGGATGGACGGTGCGTACGTGGGTCGGGTCGTTGGTTGA
TGCGTGTAGCCGTCGGTTTCGGTGCTGCTGGTGTGCAGTAGGGCGTGTAC
GTGCGCGCCGATGGATCATGAGGGTGGGAGTAGAGAATGAGGTTGCCGCC
GTCCCGCCCGCTGCTGTTGCTCCGCGAGACAGCCTTTCGCATGGGAAGCT
TTGTGGTAGGTGGAGAGGAGCGTTGCCTCTATGAAATGGGTGTTGGCTTG
AAACTAACGCCGCTATTGACAAAGGAGTATGTACCGAGTGTTTCCTTGCC
TCTCGATGACTTCACGGTCACGGCACCGTTGGTAGGACCGTTTCGGAATC
GCTGACCCCATCTCGCCCCCTCTCCCCCCCCCTCCCGAGCCCGCATGCCC
CAAACCCCTACCAACAAGACCGAAATCTTCAGCGCGAAACACGGACTCCG
ATCGGTTGTATCTTGATGTACGTACTACACGCCCAAGTCTTTCTTAAGCA
GGAGACTTGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGACCTCCC
CGCCACTAAATGGAAAACGCTTGCTTCACCAATGATCAATTATCAACTCT
TCAACAACGCGCCTGTAAAACGTCCCACACAACGGGTACATGCTCCGCAC
TTGGTTCAGTACGGGGTTTGATGAAAGCAGCATGCATTTCTCTCATTTGA
ACTACGACACAATGCAGCTCCCTTTTTTCGTTGAAACGCCGGCCCGCTGT
TGATAGGGATCGTGGTTCAGCTAACAGGCTCCAAGACGTGGATACTGTAC
GACGAGATGGTTACGATGCCGAGACCGGACCTGAAGTTTAAGCCCAAGGC
CGCTGAGCTGGGGGAGCCGATCGCCGTGCTTGACCTTCATCCCGGGGATA
TGATGTACATACCACGGTGAGATGATAATGATGCACCCGGCACACGCGAG
AGCGAGGGGGGGGGGGCGGAGACAGTGAGAGGGGGAGAGAGGGAGAGATA
GAGAGAGAGAGGAGAGGCGGGGAGGACGTGCGAGTTGTTTTTTTAAAGCT
GCTGTAGTCGTGTGATCATGTTTGCGGCCCATACCAACCTGTGTGTGCCC
GTTTCCCGCGACGGGCACTGGTCCTCTCTGCTTGTTCTTCAGGGGCTGGC
CTCACGAGGCAGCGGTTAACGGCACAGCCGCGAGGCCGAGTGGAGGGAGG
GGGGCGTCACCAAGCAGCAGTGCAGCTAGGGGGCCATCGCTCCATCTGAC
TTTCGGAGTCGAAACGGCCTTGTCGGGCACGTACGAGTCGCTGCTGCACC
ACGCCCTGGAGGTCGCAGCGGTGGAGCACCCGTTGCTGCTCGGGCTCTCG
CCACGAGGAGGAGAGGAGGTGAGTGATAATGATGGATGATGAGGAGGAAG
AGTGAGTGAGGATGATGAGGAGGAGTGCGTGAGAATGGTGAGGAGGAAAA
GTCAGTGGGGATGAGGAGGGTGGGTGGGGATAAGGAGGGTGGGTGGGGAT
GAGGGGGAGAGGTGAGTGAGGAGGAGGAGAGGTGAGTGAGGATGAGGAGG
AGGAGGAGGAGGAGAGGCGAGGATGAGGCTTGGATAGAGGTCTGCAGGCT
CGGTCCGCTCTGCCCCAGCGGAAGGTCGTTCGAAATATCAAGAAAACGTT
CCTTCACGTATAACCCCTTTTGTTAGTGTTTGGGTTTGGAGACGTTTTTT
TAGGACGTGCTCTGGAAGGACGACATTCATGTTGACAGCATGTAACGATT
TGTTTTTCACATTTGTTCTGTAGCAGCCTTAGTCTCTGCTGCCTTGACCT
TATCGCATTCCACTGCTACAACAGCGCATGTTTGTGTGTGTCTGGTCGCC
ATTGGAGTGTGTGGCCTTGGTTTGTTGTTGCCTGGGCTGCTATTTAGACA
TTACGATGCTTCTCGGTAAATTGGATGCCGAAGCTGCTGCCATCGGTATA
TGCCGTAGATACAGTACCACGAATCATGCGGTAGAACGAGGATACACATA
CACATGTTTTCCACAGCATCTGCATCAGCAGCCATACGTACAGAGGCCTT
TGCGTTGTCCTTATTTTTTTCGTGTGACGGGTGCACTGCTGTACCTCTCT
CTGCACCGACATTCTCCCCGTACCTGTCTTCGTGTCTGCTCCTGCATTGT
GCCTCTGCCTTTCGTCCTCTATTTTTTCTTTCCTTCTCCTTGTCTATCTC
GCTCGATCCCGACCACTTCCTAAGAGCGACAAACAATCAGCCGACGACTC
CGATGAAGACAATCAAGGCCGTAAGGGGGGGGATGCCGAGGTACCGTGGC
TGCAGCTGCTTCACCTCTGGGTACACGACGTCGCTTCTCGCGACGCGCGC
CTTCGAAAGTGAGAACGAACGCATTCGTGTGTTTTCTAACGTTATCATAG
TTGAGGCGTGAAGGTTTCCCGGCGATGACTTTGACTATCTGTCGCTTGGT
AGGAGAGGGCTCAGCTCGGCGCCTTCTTTTGCTTTCCTAAATCTGCGACA
TCAGGCTAAACCGTTGGAAGTGTTGTCTGTACGGTGTGTGGAAACGAGTA
TGTATGCAAGCGCTGGTCGAAAGATACGCGCACGCAATGCCTACGTCGCA
CACACCACGCATGTTATGTCTACGTAAACAAGCATGCTTACCCCTCCCTC
TCCCTCTACTCTTGCCCTGCTTGCGACCGCCTCATGTCCTCAATCTTGCT
TCGTTATATTCTCGCACCCGCACACCCACAACGCGTGCACACATCTATCC
ACCCAAGCAGAGCTGTGCCTCTGGCGCCCCTTTTCTCTGCGTCGTCGGAG
GGACGCCCAACTCCTCCAACAGCCACGAAAGACAACTCGGACGCCGGCAG
CATCGACGACGACGACGACGACGACGACGTCGCCGGTGGTCGACGCGAAG
GAGTCTGTACGGCGTCAGCCCAGCGACAAGAGCAGCACCAGACGGCGGCG
GCACCACCCCGAGCCGTGCTACAGGAGTTCCAAGTATCGCTGGAGGCGTG
TGCGGGGAGTGCCGCTGCCGACGACGCCCACGGGGTAGGAGGAGGGGCAT
CGAGCACGCTAGCGCTTCTGGACTCGCTGCTGGAGAACGAGCAGCTGTAC
CGTGTGAGGGAGATGTTCTTCGTCGGCGATGGCGAGCTGCGCGGTCGTGG
TGGCGGCGAGAGTTCCGGAGGTTACGCGGCGGCGGCGGCACAGCGGGGTG
GGGAGGATGAGGATGCGGCAGACCCCGTGCTTTCTCCCCGGATGTCGGAG
GAGACCGAGTGGAGCAGGTGAGACAAAGCGAAGCAGGCCGTATGTGGCAT
TCTTCATGTTCTTGCCCTCGGTCTTTGTTTCTACAGCAGGACTTCACAAT
GTGCGAAGTGTGCTATTATTCGTGTTGTTATGTGGGGCGACGTAGATCTT
CGATTGAGGTATGGGTGATTGGTTGGTTCACGACGAGAGCACTTGAACAG
ATAGTACGCTTGAGTACCGGGCGCTTGGTTTCTTGCTTTGCGTTGTTTGG
GAGCGTGCGTTTTTTTTATTTTGATTGTTGCTGTTTCCTTTTCGCTGCTG
CTCTCTTCGTGTGTATCTTGCTGGTTGTTGCGGTTGTGGTAGTGGTGGAT
GTGAGTTACGGTACCTCGAAGCTCGGAGTTCAATTTCGTTCGAGGCATTG
GTTCCACCAATCATATCGGGGATAGCTTCTTACGCCTCCCCCTCCGCCCA
ACCCCCCGGTGTCTACCATCGGGGTTGGGTTTTCGTCGCATGGCAACGAC
GTTGTAATGACAAGCCTACTACTACGTGAGCTTGGCAACCAGGTTACCGC
TTTTTTTTTACCTCTGTTTTTTTTGTGGCGGTAACCATAATGGTGGTCGA
GTAGATTTTGTTGTGCGGGGTAGAGAACCCTCACTCCGCGCAGAGAGAAT
GATCGCACCACGTTGTGTTTAATTGGTCAAGTACCCTCGAGGCAGTTCCA
CAGTGCTGATAACTGTCTGTCGAAGTGAAAACACCAGAAAAAAAATTATG
TCATACGCAGCTGTCATCCGTTTGCAAGGAAGTAAGCACAATATGTCAAC
CACCCTTAGCAGGATGCAGCGCACCCTCCATGCGACTCGCCAAATACCTC
ACGGTGCTTCGCGCTTGGTGATGTGAGACCCTGGTCCGGTGATATCCCGG
CGTGCTCCATCCCGGCTTTGTAGGGATGCCAGGCCAATGGTCTAACGACT
ACGGCATGCAAGATTATGAGCACACCCCCCCCAAGAGAGTTGTTCGCGAC
CTGGCCAGGCTATTCCCCGCCCTGTTGCTGTCTTAATGCTTTGCCTCGTT
TCGCACAAGATCCACGGTGCGAAGCCGCGCTTCCTTTGCCAAGTGTAGCG
ATAACATGTACGTATCCTATAGCTTTTTGTAGCACGCCTTCTATGTCCGA
GTTGACCGAATTCGAGCGTGGTGGCGATTCCAACAGGAACATCAAGACCA
AGAGGCATCCATCAGATCAGATCACCCATTTTATTTCGTTTTTTTCTCTT
GAAAATCTTAATCTTTTTCGTTGCTACTGCTGTTACCCCTAATCTTGCCC
TACCCCTTACGCCCCTTTTTTTTCTAACCATGTTATGTTAGGGCAACGCT
GGAAGCGTTCGACCGCACGCGCTTTTCGTCTTCTTCGCTGCGGGAAAAAA
TGGAGGGGTTTCGAAGTGTGGCGTCGCCCGAAGGGGCATTGCGGCGGATG
GTGGTAGCCTCATCAAGAAGAGCAAGAGAAAGGGACGAGGTCACCGAGCG
AGACTTAGCCAGATGTGGGCAGGGTCCGCCGAGTCGGGGTGGTGTAGAGG
TGTAGCGAGCGGTGTATGCATACCACGTTGACTGCTGCTGTGTGATGTAG
ACGAATGCTTCGTTGTAGTATGTGGGGACAAAGAGTGAGAGGGTGCTTCG
GCTCGAAAAACAAGGGAAGAATAGTGCTTGAGTTTTTTTGTCACGATCAG
GTAACGATCAAGTTTGTGTGTTGTTTAAGAGCCCGGGAGGGATATTGGGA
GGCTGATGGTTGTGGCTCCATGCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9818:589..6015-

>mRNA_Ecto-sp13_S_contig9818.21469.1 ID=mRNA_Ecto-sp13_S_contig9818.21469.1|Name=mRNA_Ecto-sp13_S_contig9818.21469.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1662bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9818:589..6015- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGTGACTGGAACATCATCAAGCGGGTGTTCGTGCAAGCTGACGGTGA
GTTCTGGACGGCCGGACTCCCCCCGTCGGCCTCGGCAGCGAACAAGCAGG
AAAGACGCTCCTCCTCCCCCTCCTCCTCCTCCTCGTCCCCTACAAGCGGT
GCTTCAGACGGTTCGGGCAGCAACGCACCGCCGGCACGAGGAAAGACGCA
TGCCGGGGGGGCAGACAGGGTAGTGTCTCTGGAGGAAGCTCGCGTGGCTT
TTCACCGAGGAGGGTTTTCCGTGGTCATCAACCGACTGCAGAGGAGGTGG
CGCGGCGTGTTGAGGGCTTCGCGGGCGCTGGAAGATGTGCTGGGGCAGCC
CGTGAACGCGAACCTGTACATGACCCCGCCCCAAAGCCAGGGATTCGAGG
CGCACTTCGACTGGATGGACGGGATCGTGGTTCAGCTAACAGGCTCCAAG
ACGTGGATACTGTACGACGAGATGGTTACGATGCCGAGACCGGACCTGAA
GTTTAAGCCCAAGGCCGCTGAGCTGGGGGAGCCGATCGCCGTGCTTGACC
TTCATCCCGGGGATATGATGTACATACCACGGGGCTGGCCTCACGAGGCA
GCGGTTAACGGCACAGCCGCGAGGCCGAGTGGAGGGAGGGGGGCGTCACC
AAGCAGCAGTGCAGCTAGGGGGCCATCGCTCCATCTGACTTTCGGAGTCG
AAACGGCCTTGTCGGGCACGTACGAGTCGCTGCTGCACCACGCCCTGGAG
GTCGCAGCGGTGGAGCACCCGTTGCTGCTCGGGCTCTCGCCACGAGGAGG
AGAGGAGAGCGACAAACAATCAGCCGACGACTCCGATGAAGACAATCAAG
GCCGTAAGGGGGGGGATGCCGAGGTACCGTGGCTGCAGCTGCTTCACCTC
TGGGTACACGACGTCGCTTCTCGCGACGCGCGCCTTCGAAAAGCTGTGCC
TCTGGCGCCCCTTTTCTCTGCGTCGTCGGAGGGACGCCCAACTCCTCCAA
CAGCCACGAAAGACAACTCGGACGCCGGCAGCATCGACGACGACGACGAC
GACGACGACGTCGCCGGTGGTCGACGCGAAGGAGTCTGTACGGCGTCAGC
CCAGCGACAAGAGCAGCACCAGACGGCGGCGGCACCACCCCGAGCCGTGC
TACAGGAGTTCCAAGTATCGCTGGAGGCGTGTGCGGGGAGTGCCGCTGCC
GACGACGCCCACGGGGTAGGAGGAGGGGCATCGAGCACGCTAGCGCTTCT
GGACTCGCTGCTGGAGAACGAGCAGCTGTACCGTGTGAGGGAGATGTTCT
TCGTCGGCGATGGCGAGCTGCGCGGTCGTGGTGGCGGCGAGAGTTCCGGA
GGTTACGCGGCGGCGGCGGCACAGCGGGGTGGGGAGGATGAGGATGCGGC
AGACCCCGTGCTTTCTCCCCGGATGTCGGAGGAGACCGAGTGGAGCAGGG
CAACGCTGGAAGCGTTCGACCGCACGCGCTTTTCGTCTTCTTCGCTGCGG
GAAAAAATGGAGGGGTTTCGAAGTGTGGCGTCGCCCGAAGGGGCATTGCG
GCGGATGGTGGTAGCCTCATCAAGAAGAGCAAGAGAAAGGGACGAGGTCA
CCGAGCGAGACTTAGCCAGATGTGGGCAGGGTCCGCCGAGTCGGGGTGGT
GTAGAGGTGTAG
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