mRNA_Ecto-sp13_S_contig9801.21457.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9801.21457.1
Unique NamemRNA_Ecto-sp13_S_contig9801.21457.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9801.21457.1 vs. uniprot
Match: A0A6H5L524_9PHAE (DHC_N2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L524_9PHAE)

HSP 1 Score: 1562 bits (4044), Expect = 0.000e+0
Identity = 897/1112 (80.67%), Postives = 938/1112 (84.35%), Query Frame = 1 
Query:   73 ELALARARETTSLLRSLREVQADRFLPPDGVEGEEGMPTDNGVVAAMRAWNPVASSASSAGTGVSGSLAFLGDGNDGGVRSKSGLLGRNATGAAKITAGGIAGSTVRARIGLGRMTLPLRGFRDRERTPVEMATGESAAXXXXXXXXXXXXXXLMDVHARLRGSVLSASPSPMARLLAATTAPLPSSPNGDRCIAN-------RSRAAAVGPGTRPTGHRAFWLEPTGVERLGSYYSPAAQLLYLDVSRGCLAWRESANTGGSTCNDGEINSGGVGGGLGSRMRATATPKLARRDAAREQTSATDSANPQGCIGIVSNGTRTASQGGPNCVNATVVTRTGSSEKDEPGLGLRTPYMESECHNRPTYAGRGGGXXXPGVPSSSEAFQVSRPHDSNHSSRNDGQEGRSETLMSSSPPDAIAAGAGVQSPKLPSEGNNNTVGPLVPESSPGRERTSDRKCLPRAGQEGALAGCEVAHPPRSSSPPGKRNQTPPAVLFKIRRRPDDGTGQRDDDRLRCPEEGRGSMNGEQAELWMGQRSDGNGDGGGWASAGSVQAANPELEVSDAAGRRQAGFAR---------------YQYYIQCDSTLAESVTVLQPPWQAGIVRKVLHGLSGRXXXXXXXXXXXXXXXXXXXXGCNTSGRHNGTSGGWDVERSNDEEHSCSESDNXXXXXXXXXXXRYSRPGGKYVEGTGTENVPAKDAQEGGQGEEEGE---EGDLFEVHVEGPAPVAKTAQHKVPPLAVTSGRDQPLLSPTTYSGGGRVVGGGGSVFSSRVDGASRATAFNRAANTAKRSSARTPRGVVGPGPGEVRMPEVPDGWKAGVEARLEETCEAFRASIRRAVLNYVLLDAGQRDRLGIPAVPPGFASEGWGWGKGRGIHKSPPEWRRRFVRAREALNMGQITGSPALVAAQALLAKCRGTRLLRLPKSAAEIQASSWSAMTAEEFRSSQLSHLSRKARRIRRLLYPGLSEALKAQLGVGSKGTRATTAELATRTKSSPPDGHVRRYLAAVNVMTASILRGMVETAISDLKAFFRIHAAVDASNKDDDDDGNDETHNRNDSSDATGVDASLSKRPSLHLAGSGGGDRGRGEACYCPPIFKIFLE 3333
            +LA ARARETTSLLRSLREVQADR LPPDGVEGEEGMPTDNGVVAAMRAWNP ASSASSAGTGVSGSLA LGDGNDG VRSKSGLLG++ATGAAKITAG I GSTVRARIGLGR+TLPLRGFRDR RTPV MATG+SAAXXXXXXXXXXXXX LMDVHARLRGSVLSASPSPMARLLAATTAP PSSP GDR IAN       RSRAAAV PGTRPTGHRA WLEPTGVERLGSYYSPAAQLLYLDVSRGCLAWRESANTGG TCNDG  ++GGVGGGLGSR+   ATPKLARRDAAR ++S TDSAN QG  GIVS+ TR ASQ GPN VNA VVTRTGSSEKD   LGLRTP+ ESECHNRP YAG G G   PGVPSSS+A  +SRPHDS+H SRNDG EGRSETLMSSSPPDAIAAGAGVQ P+LPSEGNNNTVGPLV ES PGRE+ SDR C PRAGQEGALAGCEVAHPPRS SPP KR Q+PPAVL KIR R D+GT QRDDDRL CP EG GSM GE+ ELWMGQRSDGNGDGGGWA AG+V AANP LEVSDA GRRQAGFAR               Y +YIQCD TLAESVTVLQPPWQAGIVRKV+HGLSGR XXXXXXXXX            NTSG H GTS G DVE+SNDEE + SESDN           RYSRPGGK VEGTGTENVP KDAQ+GG+         EGDLFEVHVEGP+P+AKTAQHKVPPLAVTSGRD P  SPTT S GGR VGGG SVFSSRV         NRAA+TAKR  ARTPRGVVGPGPGEVRMPE+P GWKAGVEARLEETCE+FR+SIRRAVLNYVLLDAGQRDRLGIPAVPPGFASEGWGWGKGRGIHKSPPEWRRR+VRAREALNMGQITGSPALVAAQALLA CRGTRLLRLPKSAAEIQASSWSAMTAEEFRSSQLSHLSRKARR+RRLLYPGLSEALKAQLGVGS GTRAT+AELATR K SPPDGHVRRYLAAVNVMTASILRGMVETAISDL+AFFRIHAAV A+N              N SSDATGVDAS+SKRP L+LAGSGGGDRGRGEACYCPPIFK+  E
Sbjct:  185 QLAQARARETTSLLRSLREVQADRCLPPDGVEGEEGMPTDNGVVAAMRAWNPGASSASSAGTGVSGSLALLGDGNDGDVRSKSGLLGKDATGAAKITAGEITGSTVRARIGLGRITLPLRGFRDRGRTPVGMATGDSAAXXXXXXXXXXXXX-LMDVHARLRGSVLSASPSPMARLLAATTAPSPSSPYGDRGIANSILPERKRSRAAAVEPGTRPTGHRALWLEPTGVERLGSYYSPAAQLLYLDVSRGCLAWRESANTGGFTCNDGGSDNGGVGGGLGSRILLPATPKLARRDAARGKSSYTDSANAQGYDGIVSSITRAASQAGPNGVNAKVVTRTGSSEKDGHELGLRTPHKESECHNRPAYAGGGDGGCGPGVPSSSKACDMSRPHDSSHDSRNDGHEGRSETLMSSSPPDAIAAGAGVQPPELPSEGNNNTVGPLVTESLPGREKASDRSCPPRAGQEGALAGCEVAHPPRSPSPPVKRRQSPPAVLSKIRLRLDNGTDQRDDDRLPCPGEGCGSMEGERVELWMGQRSDGNGDGGGWAVAGAVHAANPGLEVSDATGRRQAGFARCRGVIGSSVCLVCVRYHHYIQCDPTLAESVTVLQPPWQAGIVRKVIHGLSGRGXXXXXXXXX------------NTSGCHTGTSRGRDVEKSNDEEDTSSESDNAGAGVWGIGGGRYSRPGGKGVEGTGTENVPTKDAQDGGEXXXXXXXXXEGDLFEVHVEGPSPLAKTAQHKVPPLAVTSGRDHPPQSPTTNSSGGRGVGGGASVFSSRV---------NRAADTAKRLRARTPRGVVGPGPGEVRMPELPGGWKAGVEARLEETCESFRSSIRRAVLNYVLLDAGQRDRLGIPAVPPGFASEGWGWGKGRGIHKSPPEWRRRYVRAREALNMGQITGSPALVAAQALLATCRGTRLLRLPKSAAEIQASSWSAMTAEEFRSSQLSHLSRKARRVRRLLYPGLSEALKAQLGVGSNGTRATSAELATRAKPSPPDGHVRRYLAAVNVMTASILRGMVETAISDLQAFFRIHAAVHANNXXXXXXXXXXXXXXNCSSDATGVDASMSKRPFLYLAGSGGGDRGRGEACYCPPIFKVIRE 1274
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BLAST of mRNA_Ecto-sp13_S_contig9801.21457.1 vs. uniprot
Match: D7G491_ECTSI (Similar to Dynein heavy chain 3, axonemal (Axonemal beta dynein heavy chain 3) (Ciliary dynein heavy chain 3), partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G491_ECTSI)

HSP 1 Score: 1560 bits (4040), Expect = 0.000e+0
Identity = 901/1129 (79.81%), Postives = 941/1129 (83.35%), Query Frame = 1 
Query:   73 ELALARARETTSLLRSLREVQADRFLPPDGVEGEEGMPTDNGVVAAMRAWNP---VASSASSAGTGVSGSLAFLGDGNDGGVRSKSGLLGRNATGAAKITAGGIAGSTVRARIGLGRMTLPLRGFRDRERTPVEMATGESAAXXXXXXXXXXXXXXLMDVHARLRGSVLSASPSPMARLLAATTAPLPSSPNGDRCIAN-------RSRAAAVGPGTRPTGHRAFWLEPTGVERLGSYYSPAAQLLYLDVSRGCLAWRESANTGGSTCNDGEINSGGVGGGLGSRMRATATPKLARRDAAREQTSATDSANPQGCIGIVSNGTRTASQGGPNCVNATVVTRTGSSEKDEPGLGLRTPYMESECHNRPTYAGRGGGXXXPGVPSSSEAFQVSRPHDSNHSSRNDGQEGRSETLMSSSPPDAIAAGAGVQSPKLPSEGNNNTVGPLVPESSPGRERTSDRKCLPRAGQEGALAGCEVAHPPRSSSPPGKRNQTPPAVLFKIRRRPDDGTGQRDDDRLRCPEEGRGSMNGEQAELWMGQRSDGNGDGGGWA-SAGSVQAANPELEVSDAAGRRQAGFARYQYYIQCDSTLAESVTVLQPPWQAGIVRKVLHGLSGRXXXXXXXXXXXXXXXXXXXXGCNTSGRHNGTSGGWDVERSNDEEHSCSESDNXXXXXXXXXXXRYSRPGGKYVEGTGTENVPAKDAQEGGQGEEEGEEG-DLFEVHVEGPAPVAKTAQHKVPPLAVTSGRDQPLLSPTTYSGGGRVVGGGGSVFSSRVDGASRATAFNRAANTAKRSSARTPRGVVGPGPGEVRMPEVPDGWKAGVEARLEETCEAFRASIRRAVLNYVLLDAGQRDRLGIPAVPPGFASEGWGWGKGRGIHKSPPEWRRRFVRAREALNMGQITGSPALVAAQALLAKCRGTRLLRLPKSAAEIQASSWSAMTAEEFRSSQLSHLSRKARRIRRLLYPGLSEALKAQLGVGSKGTRATTAELATRTKSSPPDGHVRRYLAAVNVMTASILRGMVETAISDLKAFFRIHAAVDASNKDDDDDGNDETHNRNDSSDATGVDASLSKRPSLHLAGSGGGDRGRGEACYCPPIFKIFLEDRCSSPSSYRGSTLTCRKSLRDLKEAVMDV 3423
            +LALARARETTSLLRSLREVQADRFLPPDGVEGEEGMPTDNGVVAAMRAWNP    ASSASSAGTGVSGSLAF GDGNDG +R+K+GLLG+NATGAAKITAG IAGSTVRARIGLGRMTLPLRGFRDR RTPV +ATGESAAXXXXXXXXXXXXXXLMDVHARLRGSVLSASPSPMARLL ATTAP PSSPNGDR IAN       +SRAAAV PGTRPTGH + WLEPTGVERLGSYYSPAAQLLYLDV+RGCLAWRE+ANTGG TCN+G  N+ GVGGGLGSR+ A ATPKLARRDAAR QTS TDSANPQ  +G+V+N TR ASQGGPN VNATVVT TGSSEKD   LGLRTP+MESECHNRP YAG G  XXXPGVPSSSEA Q+SRPHDS+HSSRNDGQEGRSET MSSSPPDA  A AGVQSP+LPS+GNNNTVGPLVPESSPGRERTSDR C PRAGQ GALAGCEV +PPRSSSPP KRNQTPPAVL KIRRRPDD TGQRDDDRL CP EGRGSM GE+AELWMGQRS GNGD GGWA SAG+VQAANPELEVSDAAGRRQAGFARY +Y+QCDSTLAESVTVLQPPWQAGIVRKV+HGLSGR   XXXXXXXXX         CNTSGRH+GT  GWD+E+SNDEE + SESDN           RYSRPG K V GTGTEN+PAKDAQEGG          D+FEVHVEGPAPVAKTAQHKVP LAVTSG DQP  SPTT SGGGR V GGGSVF+SRVDG  RATAFNRAANTAKR  ARTPRGV GPGPGE RMPEVPDGWKAGVEA LEETCEAFRASIRRAVLNYV+LDAGQRDRLGI AVPPGFAS+GWGWGKGRGI KSPPEW+RRFVRAREALNMGQITGSPALVAAQALLAKCRGTRLLRLPKSAAEIQASSWSAMTAEEFRSSQLSHLSRKARR+RRLLYPGLSEALKAQLGVGSKGTRATTAELATRTKSSPPDGHVRRYLAAVNVMTASILRGMVETAISDL+                                                                     IFLEDRCSSP+S RGSTLTCRKSLRDLKEAVMDV
Sbjct:  165 QLALARARETTSLLRSLREVQADRFLPPDGVEGEEGMPTDNGVVAAMRAWNPGRSSASSASSAGTGVSGSLAFSGDGNDGDIRTKNGLLGKNATGAAKITAGEIAGSTVRARIGLGRMTLPLRGFRDRGRTPVGIATGESAAXXXXXXXXXXXXXXLMDVHARLRGSVLSASPSPMARLLDATTAPSPSSPNGDRGIANSVLPERKQSRAAAVEPGTRPTGHLSLWLEPTGVERLGSYYSPAAQLLYLDVNRGCLAWRENANTGGFTCNEGGSNTRGVGGGLGSRILAPATPKLARRDAARGQTSPTDSANPQVYVGMVANVTRVASQGGPNGVNATVVTGTGSSEKDGHKLGLRTPHMESECHNRPAYAGGGXXXXXPGVPSSSEARQMSRPHDSSHSSRNDGQEGRSETWMSSSPPDATPAKAGVQSPELPSDGNNNTVGPLVPESSPGRERTSDRNCPPRAGQVGALAGCEVTYPPRSSSPPVKRNQTPPAVLSKIRRRPDDETGQRDDDRLPCPGEGRGSMEGERAELWMGQRSGGNGDRGGWAASAGAVQAANPELEVSDAAGRRQAGFARYHHYLQCDSTLAESVTVLQPPWQAGIVRKVVHGLSGRGGGXXXXXXXXX---------CNTSGRHSGTPRGWDLEKSNDEEDTSSESDNGGVGVRGIGGGRYSRPGCKDVGGTGTENIPAKDAQEGGXXXXXXXXXXDVFEVHVEGPAPVAKTAQHKVPYLAVTSGGDQPPQSPTTNSGGGRGVVGGGSVFTSRVDGTPRATAFNRAANTAKRPRARTPRGVAGPGPGEARMPEVPDGWKAGVEACLEETCEAFRASIRRAVLNYVVLDAGQRDRLGISAVPPGFASQGWGWGKGRGIQKSPPEWQRRFVRAREALNMGQITGSPALVAAQALLAKCRGTRLLRLPKSAAEIQASSWSAMTAEEFRSSQLSHLSRKARRVRRLLYPGLSEALKAQLGVGSKGTRATTAELATRTKSSPPDGHVRRYLAAVNVMTASILRGMVETAISDLQ---------------------------------------------------------------------IFLEDRCSSPNSDRGSTLTCRKSLRDLKEAVMDV 1215
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BLAST of mRNA_Ecto-sp13_S_contig9801.21457.1 vs. uniprot
Match: A0A7S3XR73_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR73_HETAK)

HSP 1 Score: 104 bits (259), Expect = 1.990e-19
Identity = 90/279 (32.26%), Postives = 122/279 (43.73%), Query Frame = 1 
Query: 2308 RVVGGGGSVFSSRVDGASRATAFNRAANTAKRSSARTPRGVVGPGPGEVRMPEVPDGWKAGVEARLEETCEAFRASIRRAVLNYVLLDAGQRDRLGIPAVPPGFASEGWGWGKGRGIHKSPPEWRRRFVRAREALNMGQITGSPALVAAQALLAKCRGTR--LLRLPKSAAEIQASSWSAMTAEEFRSSQLSHLSRKARRIRRLLYPGLSEALKAQLGVGSKGTRATTAELATRTKSSPPDGHVRRYLAAVNVMTASILRGMVETAISDLKAFFRIHAA 3138
            R  GGGG    +R D A+     +R   T +    R   G  GP P  V   E   G    +   LE        S  +A L+YVLLD G+R RLG+P +P     E WGWG G+   ++P  WRR    A   L+   +  +PA+ A+  L+    G    L+ LP SAAE  A  W+     +F + Q S LSR  + I    YP LS+     +  G+                 P D  VRR+L  VN      LR +V  ++  L AFF + AA
Sbjct:  122 RSGGGGGRDDRARYDTAAWDQQLDR--RTLENILRRAFPGPAGPPPPLVGAGEXXXGGPPALLLCLEAAHRGRGRSAHKATLDYVLLDEGERRRLGVPEIPRELRPEAWGWGCGKAAKRTPAWWRRGVQDAHARLDGRALMATPAMKASLRLITAAAGPAACLVDLPASAAEFLARPWAPQRPADFFNHQHSRLSRTRKEIGDACYPALSQIFMEAVTAGAL----------------PADALVRRHLRLVNRALGVRLRALVLRSLRRLGAFFEVFAA 382
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9801.21457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L524_9PHAE0.000e+080.67DHC_N2 domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G491_ECTSI0.000e+079.81Similar to Dynein heavy chain 3, axonemal (Axonema... [more]
A0A7S3XR73_HETAK1.990e-1932.26Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9801contigEcto-sp13_S_contig9801:55..6158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score1581.6
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7G491
Preferred nameDNAH12
Model size3423
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Ec32 ortholog descriptionDynein heavy chain
Ec32 orthologEc-02_001770.1
Cds size3423
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9801.21457.1prot_Ecto-sp13_S_contig9801.21457.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9801 55..6158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464244.3835683-CDS-Ecto-sp13_S_contig9801:54..1561681464244.3835683-CDS-Ecto-sp13_S_contig9801:54..156Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9801 55..156 -
1681464244.3968723-CDS-Ecto-sp13_S_contig9801:616..8991681464244.3968723-CDS-Ecto-sp13_S_contig9801:616..899Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9801 617..899 -
1681464244.407738-CDS-Ecto-sp13_S_contig9801:1329..15361681464244.407738-CDS-Ecto-sp13_S_contig9801:1329..1536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9801 1330..1536 -
1681464244.4192398-CDS-Ecto-sp13_S_contig9801:2017..22551681464244.4192398-CDS-Ecto-sp13_S_contig9801:2017..2255Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9801 2018..2255 -
1681464244.4323313-CDS-Ecto-sp13_S_contig9801:2695..35221681464244.4323313-CDS-Ecto-sp13_S_contig9801:2695..3522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9801 2696..3522 -
1681464244.4414263-CDS-Ecto-sp13_S_contig9801:3876..55671681464244.4414263-CDS-Ecto-sp13_S_contig9801:3876..5567Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9801 3877..5567 -
1681464244.450362-CDS-Ecto-sp13_S_contig9801:6083..61581681464244.450362-CDS-Ecto-sp13_S_contig9801:6083..6158Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9801 6084..6158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9801.21457.1

>prot_Ecto-sp13_S_contig9801.21457.1 ID=prot_Ecto-sp13_S_contig9801.21457.1|Name=mRNA_Ecto-sp13_S_contig9801.21457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1141bp
SNRNRGGIHAFGKCYIPYTSRGNKELALARARETTSLLRSLREVQADRFL
PPDGVEGEEGMPTDNGVVAAMRAWNPVASSASSAGTGVSGSLAFLGDGND
GGVRSKSGLLGRNATGAAKITAGGIAGSTVRARIGLGRMTLPLRGFRDRE
RTPVEMATGESAAATAATVVSPPPPPPLMDVHARLRGSVLSASPSPMARL
LAATTAPLPSSPNGDRCIANRSRAAAVGPGTRPTGHRAFWLEPTGVERLG
SYYSPAAQLLYLDVSRGCLAWRESANTGGSTCNDGEINSGGVGGGLGSRM
RATATPKLARRDAAREQTSATDSANPQGCIGIVSNGTRTASQGGPNCVNA
TVVTRTGSSEKDEPGLGLRTPYMESECHNRPTYAGRGGGGGGPGVPSSSE
AFQVSRPHDSNHSSRNDGQEGRSETLMSSSPPDAIAAGAGVQSPKLPSEG
NNNTVGPLVPESSPGRERTSDRKCLPRAGQEGALAGCEVAHPPRSSSPPG
KRNQTPPAVLFKIRRRPDDGTGQRDDDRLRCPEEGRGSMNGEQAELWMGQ
RSDGNGDGGGWASAGSVQAANPELEVSDAAGRRQAGFARYQYYIQCDSTL
AESVTVLQPPWQAGIVRKVLHGLSGRGGGGGGGGGGGGGGVGGVGGGCNT
SGRHNGTSGGWDVERSNDEEHSCSESDNGGAGVGGIGGGRYSRPGGKYVE
GTGTENVPAKDAQEGGQGEEEGEEGDLFEVHVEGPAPVAKTAQHKVPPLA
VTSGRDQPLLSPTTYSGGGRVVGGGGSVFSSRVDGASRATAFNRAANTAK
RSSARTPRGVVGPGPGEVRMPEVPDGWKAGVEARLEETCEAFRASIRRAV
LNYVLLDAGQRDRLGIPAVPPGFASEGWGWGKGRGIHKSPPEWRRRFVRA
REALNMGQITGSPALVAAQALLAKCRGTRLLRLPKSAAEIQASSWSAMTA
EEFRSSQLSHLSRKARRIRRLLYPGLSEALKAQLGVGSKGTRATTAELAT
RTKSSPPDGHVRRYLAAVNVMTASILRGMVETAISDLKAFFRIHAAVDAS
NKDDDDDGNDETHNRNDSSDATGVDASLSKRPSLHLAGSGGGDRGRGEAC
YCPPIFKIFLEDRCSSPSSYRGSTLTCRKSLRDLKEAVMDV
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mRNA from alignment at Ecto-sp13_S_contig9801:55..6158-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9801.21457.1 ID=mRNA_Ecto-sp13_S_contig9801.21457.1|Name=mRNA_Ecto-sp13_S_contig9801.21457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6104bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9801:55..6158- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAACAGAAACCGCGGCGGAATCCACGCGTTCGGGAAGTGTTACATTCC
GTACACGTCACGCGGGAACAAGGAGGTCGGTGGGGTGTGGCCGCGGTGAC
TTCTTTCCTATCGCTGTTTCTATAGCGGCTTGGAATGCGGCGACGAAAAG
ATTACAATTTATTCTTGTGCTGAAGCGGAAAGTTGCTTTGCGATCTCGAT
GACGTCGCGCGTGCCGTACTGGGAGGTATTCTGCCGGTCTACTTTGACGC
CTTCACACAAAGGAGCAACTACATAATGATAGCGGGCATAGATTTCTGTA
GTTGATACAATCTCGATACCCTGGAAATCTTGCGCACACGAGAAATACAC
CCACCTCCTAGAGAAGCAGTCGCCATACCTAAGAATGATTTCCTGAGGGC
CGAAAGGTACCGCATCACGTTTTTCTTCGGCGAGACTGCGCCGGGCTGTG
GCCATTGTCTTCAGAGCCTGCGGCGTATCGCACGGACCCGCTCCAAAGCC
ACCTTGTAAATCTCGCCCCACGTTCCGCGCTTCTCTCTTTGCCTCCTTCC
GTACACCCGGTAAACTAACGGGAACCGACTCCGGTGTCCAGCTCGCGCTA
GCTCGGGCTCGGGAGACGACCTCTCTCCTCCGCTCCCTGCGGGAAGTCCA
GGCCGACCGATTCCTTCCCCCGGACGGCGTGGAGGGCGAAGAGGGCATGC
CCACCGACAATGGCGTAGTCGCGGCAATGAGAGCGTGGAACCCCGTAGCG
TCATCAGCATCATCAGCGGGGACAGGGGTAAGCGGGAGCCTCGCATTCCT
AGGCGACGGCAACGACGGCGGTGTTCGTAGCAAGAGTGGCTTGTTGGGGA
GGAACGCAACGGGCGCGGCGAAAATCACGGCGGGCGGGATCGCCGGCAGC
ACGGTGAGAGCAAGGATCGGCCTCGGGAGGATGACGCTGCCACTGAGGGG
GTTCCGGGATCGAGAAAGAACGCCCGTCGAAATGGCAACAGGAGAAAGCG
CCGCTGCCACGGCTGCCACGGTCGTATCCCCGCCTCCGCCGCCGCCGCTT
ATGGACGTCCATGCCCGACTCCGAGGGTCCGTCCTCTCGGCCTCACCGTC
ACCCATGGCCCGCTTGCTTGCCGCAACAACGGCGCCGTTACCATCATCAC
CCAACGGGGACCGGTGCATCGCGAACAGAAGCAGAGCAGCGGCCGTCGGA
CCCGGAACTCGGCCAACCGGCCACCGTGCTTTTTGGCTTGAGCCCACAGG
GGTGGAGCGACTGGGGAGTTACTACAGCCCGGCGGCGCAGCTCCTGTACC
TCGATGTCAGCCGCGGGTGTCTCGCTTGGCGAGAGAGCGCCAACACCGGC
GGGTCCACGTGTAACGACGGAGAAATCAATAGCGGAGGTGTGGGCGGAGG
ATTAGGTTCGAGGATGCGGGCAACCGCTACACCCAAATTGGCAAGAAGAG
ATGCAGCCAGGGAGCAAACCAGCGCCACTGACAGCGCAAACCCACAAGGG
TGCATTGGAATTGTGTCGAACGGTACGCGTACTGCGTCTCAGGGCGGGCC
GAACTGCGTCAACGCCACGGTTGTCACCCGGACAGGCTCGAGTGAGAAAG
ACGAGCCTGGGCTGGGGTTGCGCACGCCTTACATGGAATCGGAGTGCCAC
AATCGACCGACCTACGCTGGCCGCGGTGGCGGTGGCGGCGGTCCAGGCGT
CCCGAGCTCAAGCGAAGCGTTCCAGGTGTCACGGCCGCACGACAGCAACC
ACAGCAGTCGAAACGACGGCCAAGAAGGACGAAGCGAAACATTGATGTCG
TCCTCGCCACCCGACGCGATAGCCGCAGGGGCGGGGGTGCAGTCTCCGAA
ACTACCATCGGAGGGCAACAACAACACGGTTGGGCCGTTGGTGCCCGAAT
CGTCTCCTGGGCGAGAAAGGACGTCGGACCGTAAGTGCCTACCGAGAGCG
GGCCAGGAAGGGGCGCTGGCGGGGTGCGAGGTAGCTCATCCACCCCGGTC
GTCATCGCCGCCCGGCAAACGCAACCAGACACCGCCGGCTGTTCTGTTCA
AAATCCGTCGACGTCCAGACGACGGGACGGGCCAGCGAGACGACGATCGG
CTACGGTGTCCGGAAGAGGGTCGCGGAAGTATGAACGGAGAGCAGGCAGA
GTTGTGGATGGGGCAGCGGTCTGACGGGAACGGCGACGGCGGTGGTTGGG
CTTCTGCTGGTTCCGTGCAGGCGGCCAACCCTGAGCTGGAGGTTTCTGAC
GCCGCCGGGAGGCGACAGGCTGGATTCGCAAGGTACCGAGGACTTATTGG
ATCCTCACTATGTTAAGCATGAATGCGGTTAAACATCGCTGGTGTGCGTG
TGTTATTCAGCGTCGGCATCGAAGCTTCAATTTGGGAAGAGAGGAATGGC
GACCAGCTCAGGAGAGGTGCTGTTCGTAGACGGGAAAATCCCCCCCAAGA
CCACAACACGACATGTTCGCCTCGAGTTCAATCGCGCAAACGATGCTACA
TCAAGAGAGCGGCTGAGCCAGAAACGCCAGCTCGCTCTCTACTACCCATG
ACACCTGTTCCGCGCCGACTCTTCGCGAACATGTCGAACGTTGATCCCCC
ACACGGAGTGCCACGTTCGTCACCAAACCCTTACAGATATCAATACTATA
TCCAGTGCGACTCCACGCTCGCGGAGAGTGTAACGGTGCTTCAGCCCCCT
TGGCAGGCCGGCATCGTCAGGAAAGTGCTACACGGCTTATCAGGGCGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGTTGGTGGTG
TTGGTGGTGGCTGCAACACGAGCGGCCGTCACAACGGCACATCCGGAGGA
TGGGACGTAGAAAGAAGCAACGACGAGGAACATTCTTGCTCGGAGAGCGA
CAATGGTGGTGCCGGTGTCGGGGGTATCGGGGGTGGGAGGTATAGCAGGC
CGGGTGGCAAGTACGTAGAAGGAACGGGAACGGAGAACGTTCCCGCGAAG
GACGCCCAAGAAGGTGGACAAGGAGAAGAAGAAGGAGAGGAAGGAGATCT
GTTCGAGGTTCACGTCGAGGGCCCTGCCCCCGTCGCCAAGACTGCTCAGC
ACAAAGTCCCGCCCCTCGCCGTGACAAGCGGCCGTGATCAACCCCTACTA
AGCCCGACAACATACAGCGGCGGTGGACGGGTCGTTGGCGGCGGGGGTTC
TGTCTTCAGCAGCAGGGTCGACGGTGCGTCGAGAGCGACGGCGTTCAACC
GTGCCGCTAACACCGCCAAACGGTCGAGTGCTCGAACGCCGAGGGGAGTG
GTTGGGCCGGGGCCGGGAGAGGTCAGGATGCCGGAAGTTCCCGATGGCTG
GAAGGCAGGAGTGGAGGCTCGCCTAGAAGAGACATGCGAAGCATTCCGAG
CGAGCATCCGGAGGGCGGTGCTGAACTACGTCCTCTTAGACGCGGGCCAA
CGAGATCGCCTAGGTGCGAACACATAGACCTTGTTTTCTTGAGAGTTCGG
CTGGTCTTGGAGCATTGGCTACTCGTTCCAGGCTCGCAGTCACATTCTTC
GTCGCGTTTGACTTCGGCATACGTTCTCTCGACGGAACAGGAAATGCGCC
GGCTGGAGGAGCGCGAGTATGATACGTCCGGCTCTTGCCTTGGTGTGCGT
TTGATCGGATTGACATACGCTCGTCTTGCTCAGTACCAAACCATGAGGTA
GACGAAGCATGCACGCGCCAGCGGATGCGAACCCAACACCAAACCCGTTT
TCAAGAACAGGAGGGGGGGGGGGGGGGGGGTCCGACACCTTAGATTTTCT
TCCCTACTGTCTTCGCCTTCCGTTCCTCCTTCAGTGTCCACCAACGTATC
AAAAACCGCTGTCGTCTCGTACTCGAATTTATACCTGCCCCATACAAAAA
AAGGCATACCAGCCGTGCCTCCAGGGTTTGCTAGCGAAGGGTGGGGCTGG
GGCAAAGGGAGGGGTATCCACAAGAGCCCTCCCGAATGGCGGAGGCGCTT
TGTGCGGGCGAGGGAGGCCCTGAACATGGGACAGATCACGGGGTCCCCGG
CGCTGGTCGCCGCTCAGGCGTTGTTGGCCAAGTGCCGCGGGACTCGGCTG
CTGAGGCTTCCGAAATCAGCCGCGGAAATCCAGGCGTCGAGGTATCTATC
TTCTACATAGATTAACCGGATAATAACCATGTCGAAAACGAGTGATCTGT
TGCTGATTCATCCTCTCCGTAGGTATTCATTAGAAACATCGTTCCGCACT
ATACAGCTTACGTTCGAGTGTACCAGTCCATGGTGCAGGACAGGCCCCGC
CCAGTCCAGGCGCGAGACGGACGAAATTCAGTTGTTCGGCGAAGTGAGCG
CTGTCAATACAACAACTGTAGAACAGTCGACCTGTCTCTTGTTCAGGACT
TACTCTCTTTTCGAGGAACGAAACCTTGACCTCTTATGTGACGGCTGACA
ATTTGTCACGATCCTGAGCGTAGCCTGTTTCCGCGCGTCATCCGTGCTTT
TTAGGTCCACTCGAACGAACTCCATACAAAAAGCCAACTTTTACTTGGTC
GCTGGTGAACGACACGAATATACCCCCGCTTCCCCTCAGTAAATGAAAAC
AAATCCGTCGGTATGATGACAGCTGGTCGGCAATGACCGCGGAAGAGTTC
CGCTCATCGCAGCTGAGTCACCTCAGCAGGAAAGCCAGGCGGATTCGGCG
GCTGTTGTATCCGGGCTTGTCGGAGGCCCTCAAGGCTCAGCTCGGCGTCG
GCTCGAAAGGAACAAGAGCGACAACTGCAGAGCTGGCAACACGCACGAAG
TCTTCACCGCCGGACGGACACGTTCGAAGGTACCGTACCGTAGTCCCGAC
AGGTGGAATACGTTGTGGTGCGTTGTCGGCTGAACATGTCGACAAGGCTC
GCAACGCCGCACGGTCGAGTTCAAAGGACATACTCTTGACTACACTTCAG
AAATTTGCTTCGACCGTATCATGTTAAAGCTTAGTGGTAGATGTGCACAT
CACGAAAGAGCGACAAATGGAGCGTGCCCTAGCAGGTGTCGCACTGCCAT
GTGCGATGGCCTCAATCTGTGGCATCAAAGCGTTGCACTTGTTTTCGATG
TACATCGAACATGACACCAGTCAGGCGTACTCTCGGTCAACGCGAAACGA
CCTATGCGTGTTTACGAGCTATGGCGGGAGATGCGGTGTGCTCATGTGAA
GTGAAGGGTCAGGCAGGCGCCCCCTCCCCGCGTGTGCTTTCCGGACTGCC
TTTCGTCAGGTATCTCGCGGCCGTGAACGTGATGACGGCCAGCATCCTCC
GAGGCATGGTAGAGACGGCCATCTCGGACCTTAAGGCCTTCTTTCGTATC
CATGCTGCCGTCGATGCCAGCAACAAAGATGACGACGACGATGGCAACGA
CGAGACCCACAACAGAAACGACAGCAGCGATGCCACGGGGGTTGATGCTT
CTTTGTCAAAACGACCATCCCTACACCTAGCGGGGTCTGGCGGGGGCGAC
CGCGGCAGGGGCGAGGCGTGTTACTGTCCGCCAATTTTTAAGGTATCGCT
GGACTGACAATCTCCTAGACAAATAGTTTCACAGAAATTTGCTGGCTTTG
CTTGCATCCAGGGATCGTGTTGCATGCGGTGTAACTCGTGTGTAGCTGGA
CTGCGGAAGGCCGCCTATGCAACTAAACGTAGCACATGCACCCAATAGCA
TTGCAATATTGTAAGAGTCACAGTTTCAGTACCAAGCTGCGAAGCTGCGA
ATGCATTACAAAGTACGTGAGCATTCATGTAGGAGACGGCGCTAGAGATC
GCGCTGATGTGGCACCGCAGCAGACCACAAGCACGTGTCTTCCTGCCTAA
TTCCTGGAAGAACAAAGGCATGTATTTCCAGAACCCACGTCAAAGACGAG
CCTTGCTTGTTCTGTTTTGACCCGAATTGTTCAAGTGCTCTCAAGTCAAT
CAATTGTTGGGGTATGCGTCGCTGTGGCTCGTTTGGATGTGTTCCTCCCC
AGATTTTCCTGGAAGACCGTTGCTCGTCGCCGAGTTCGTACCGGGGGTCA
ACATTGACGTGCAGGAAGTCTCTGCGAGACCTGAAGGAGGCGGTCATGGA
TGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9801:55..6158-

>mRNA_Ecto-sp13_S_contig9801.21457.1 ID=mRNA_Ecto-sp13_S_contig9801.21457.1|Name=mRNA_Ecto-sp13_S_contig9801.21457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9801:55..6158- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAACAGAAACCGCGGCGGAATCCACGCGTTCGGGAAGTGTTACATTCC
GTACACGTCACGCGGGAACAAGGAGCTCGCGCTAGCTCGGGCTCGGGAGA
CGACCTCTCTCCTCCGCTCCCTGCGGGAAGTCCAGGCCGACCGATTCCTT
CCCCCGGACGGCGTGGAGGGCGAAGAGGGCATGCCCACCGACAATGGCGT
AGTCGCGGCAATGAGAGCGTGGAACCCCGTAGCGTCATCAGCATCATCAG
CGGGGACAGGGGTAAGCGGGAGCCTCGCATTCCTAGGCGACGGCAACGAC
GGCGGTGTTCGTAGCAAGAGTGGCTTGTTGGGGAGGAACGCAACGGGCGC
GGCGAAAATCACGGCGGGCGGGATCGCCGGCAGCACGGTGAGAGCAAGGA
TCGGCCTCGGGAGGATGACGCTGCCACTGAGGGGGTTCCGGGATCGAGAA
AGAACGCCCGTCGAAATGGCAACAGGAGAAAGCGCCGCTGCCACGGCTGC
CACGGTCGTATCCCCGCCTCCGCCGCCGCCGCTTATGGACGTCCATGCCC
GACTCCGAGGGTCCGTCCTCTCGGCCTCACCGTCACCCATGGCCCGCTTG
CTTGCCGCAACAACGGCGCCGTTACCATCATCACCCAACGGGGACCGGTG
CATCGCGAACAGAAGCAGAGCAGCGGCCGTCGGACCCGGAACTCGGCCAA
CCGGCCACCGTGCTTTTTGGCTTGAGCCCACAGGGGTGGAGCGACTGGGG
AGTTACTACAGCCCGGCGGCGCAGCTCCTGTACCTCGATGTCAGCCGCGG
GTGTCTCGCTTGGCGAGAGAGCGCCAACACCGGCGGGTCCACGTGTAACG
ACGGAGAAATCAATAGCGGAGGTGTGGGCGGAGGATTAGGTTCGAGGATG
CGGGCAACCGCTACACCCAAATTGGCAAGAAGAGATGCAGCCAGGGAGCA
AACCAGCGCCACTGACAGCGCAAACCCACAAGGGTGCATTGGAATTGTGT
CGAACGGTACGCGTACTGCGTCTCAGGGCGGGCCGAACTGCGTCAACGCC
ACGGTTGTCACCCGGACAGGCTCGAGTGAGAAAGACGAGCCTGGGCTGGG
GTTGCGCACGCCTTACATGGAATCGGAGTGCCACAATCGACCGACCTACG
CTGGCCGCGGTGGCGGTGGCGGCGGTCCAGGCGTCCCGAGCTCAAGCGAA
GCGTTCCAGGTGTCACGGCCGCACGACAGCAACCACAGCAGTCGAAACGA
CGGCCAAGAAGGACGAAGCGAAACATTGATGTCGTCCTCGCCACCCGACG
CGATAGCCGCAGGGGCGGGGGTGCAGTCTCCGAAACTACCATCGGAGGGC
AACAACAACACGGTTGGGCCGTTGGTGCCCGAATCGTCTCCTGGGCGAGA
AAGGACGTCGGACCGTAAGTGCCTACCGAGAGCGGGCCAGGAAGGGGCGC
TGGCGGGGTGCGAGGTAGCTCATCCACCCCGGTCGTCATCGCCGCCCGGC
AAACGCAACCAGACACCGCCGGCTGTTCTGTTCAAAATCCGTCGACGTCC
AGACGACGGGACGGGCCAGCGAGACGACGATCGGCTACGGTGTCCGGAAG
AGGGTCGCGGAAGTATGAACGGAGAGCAGGCAGAGTTGTGGATGGGGCAG
CGGTCTGACGGGAACGGCGACGGCGGTGGTTGGGCTTCTGCTGGTTCCGT
GCAGGCGGCCAACCCTGAGCTGGAGGTTTCTGACGCCGCCGGGAGGCGAC
AGGCTGGATTCGCAAGATATCAATACTATATCCAGTGCGACTCCACGCTC
GCGGAGAGTGTAACGGTGCTTCAGCCCCCTTGGCAGGCCGGCATCGTCAG
GAAAGTGCTACACGGCTTATCAGGGCGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCGGTGGTGGTGTTGGTGGTGTTGGTGGTGGCTGCAACACG
AGCGGCCGTCACAACGGCACATCCGGAGGATGGGACGTAGAAAGAAGCAA
CGACGAGGAACATTCTTGCTCGGAGAGCGACAATGGTGGTGCCGGTGTCG
GGGGTATCGGGGGTGGGAGGTATAGCAGGCCGGGTGGCAAGTACGTAGAA
GGAACGGGAACGGAGAACGTTCCCGCGAAGGACGCCCAAGAAGGTGGACA
AGGAGAAGAAGAAGGAGAGGAAGGAGATCTGTTCGAGGTTCACGTCGAGG
GCCCTGCCCCCGTCGCCAAGACTGCTCAGCACAAAGTCCCGCCCCTCGCC
GTGACAAGCGGCCGTGATCAACCCCTACTAAGCCCGACAACATACAGCGG
CGGTGGACGGGTCGTTGGCGGCGGGGGTTCTGTCTTCAGCAGCAGGGTCG
ACGGTGCGTCGAGAGCGACGGCGTTCAACCGTGCCGCTAACACCGCCAAA
CGGTCGAGTGCTCGAACGCCGAGGGGAGTGGTTGGGCCGGGGCCGGGAGA
GGTCAGGATGCCGGAAGTTCCCGATGGCTGGAAGGCAGGAGTGGAGGCTC
GCCTAGAAGAGACATGCGAAGCATTCCGAGCGAGCATCCGGAGGGCGGTG
CTGAACTACGTCCTCTTAGACGCGGGCCAACGAGATCGCCTAGGCATACC
AGCCGTGCCTCCAGGGTTTGCTAGCGAAGGGTGGGGCTGGGGCAAAGGGA
GGGGTATCCACAAGAGCCCTCCCGAATGGCGGAGGCGCTTTGTGCGGGCG
AGGGAGGCCCTGAACATGGGACAGATCACGGGGTCCCCGGCGCTGGTCGC
CGCTCAGGCGTTGTTGGCCAAGTGCCGCGGGACTCGGCTGCTGAGGCTTC
CGAAATCAGCCGCGGAAATCCAGGCGTCGAGCTGGTCGGCAATGACCGCG
GAAGAGTTCCGCTCATCGCAGCTGAGTCACCTCAGCAGGAAAGCCAGGCG
GATTCGGCGGCTGTTGTATCCGGGCTTGTCGGAGGCCCTCAAGGCTCAGC
TCGGCGTCGGCTCGAAAGGAACAAGAGCGACAACTGCAGAGCTGGCAACA
CGCACGAAGTCTTCACCGCCGGACGGACACGTTCGAAGGTATCTCGCGGC
CGTGAACGTGATGACGGCCAGCATCCTCCGAGGCATGGTAGAGACGGCCA
TCTCGGACCTTAAGGCCTTCTTTCGTATCCATGCTGCCGTCGATGCCAGC
AACAAAGATGACGACGACGATGGCAACGACGAGACCCACAACAGAAACGA
CAGCAGCGATGCCACGGGGGTTGATGCTTCTTTGTCAAAACGACCATCCC
TACACCTAGCGGGGTCTGGCGGGGGCGACCGCGGCAGGGGCGAGGCGTGT
TACTGTCCGCCAATTTTTAAGATTTTCCTGGAAGACCGTTGCTCGTCGCC
GAGTTCGTACCGGGGGTCAACATTGACGTGCAGGAAGTCTCTGCGAGACC
TGAAGGAGGCGGTCATGGATGTG
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