mRNA_Ecto-sp13_S_contig98.21452.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig98.21452.1
Unique NamemRNA_Ecto-sp13_S_contig98.21452.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: D7FKW4_ECTSI (Chloroplast 50S ribosomal protein L15 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW4_ECTSI)

HSP 1 Score: 453 bits (1166), Expect = 4.880e-161
Identity = 229/232 (98.71%), Postives = 231/232 (99.57%), Query Frame = 1 
Query:    1 MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTSGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE 696
            MKATLATTALFCVG ANAFFAPTAFTGQQLTAGTSAPSRTT+GVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNG+DEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE
Sbjct:    1 MKATLATTALFCVGVANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE 232
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BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A835Z4H5_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H5_9STRA)

HSP 1 Score: 279 bits (714), Expect = 2.590e-92
Identity = 147/227 (64.76%), Postives = 169/227 (74.45%), Query Frame = 1 
Query:    1 MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTSGVTMKIFDWKRRESED-GLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 678
            M++ L   A   + A +  F  +AF GQ L A T   S   S ++MKIFDWKRRES+   L +  ++  TL P+PGSR R  RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN   EGATV+FE+L   G +TKT  RWHKVVG  EL   GLTVQAH FT SA EAIE  GGKCQLLSPTTNE++ M
Sbjct:    1 MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATGKAS---SSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDM 224
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BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A836CHQ3_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ3_9STRA)

HSP 1 Score: 267 bits (683), Expect = 1.380e-87
Identity = 138/215 (64.19%), Postives = 162/215 (75.35%), Query Frame = 1 
Query:   37 VGAANAFFAPTAFTGQQLTAGTSAPSRTTSGVTMKIFDWKRRESEDG-LVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 678
            V  A+A+ A +AF GQ +   T   S   + V+MKIFDWKRR+ +     +  ++  TL P+PGSR R  RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN   EG+TV+FE+L   G +TKT  +WHKVVG  EL    LTVQAH FT SA EAIE  GGKCQLLSPTTNE++ M
Sbjct:   14 VAVADAWVATSAFNGQAVGTHTCKAS---NAVSMKIFDWKRRDDDSANTAVKELSPATLVPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGSTVSFETLHEQGTLTKTSLKWHKVVGNGELNVKNLTVQAHAFTGSAKEAIEGAGGKCQLLSPTTNEIVDM 225
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BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A7S1BKP2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKP2_9STRA)

HSP 1 Score: 246 bits (629), Expect = 2.180e-79
Identity = 128/192 (66.67%), Postives = 145/192 (75.52%), Query Frame = 1 
Query:  112 SRTTSGVTMKIFDWKRRESEDGLVLDR----VAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGM-ELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 672
            S +TS +TMK+FDWKRRE+++  + D       +D LKPAPGSR R KRKGRGIAAGQGA+CGFGMRGQKSRSG   RAGFEGGQQPLYRRLPK VG+PMGPGH+K  +NLIKLD LNG  EG+TVNF SL  +G +TK+K   HKVV G  E    GL VQAH FT SA  AIE  GGKC+LLSPTT  VL
Sbjct:   31 STSTSSLTMKVFDWKRREADESAINDAENFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKLDELNGAAEGSTVNFASLFESGDITKSKVGIHKVVTGKKEFTAKGLIVQAHAFTSSAQTAIEGAGGKCELLSPTTGAVL 222
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BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A7S1BF06_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BF06_9STRA)

HSP 1 Score: 244 bits (623), Expect = 1.770e-78
Identity = 126/190 (66.32%), Postives = 143/190 (75.26%), Query Frame = 1 
Query:  118 TTSGVTMKIFDWKRRESEDGLVLDR----VAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGM-ELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 672
            T +G TMK+FDWKRRE+++  + D       +D LKPAPGSR R KRKGRGIAAGQGA+CGFGMRGQKSRSG   RAGFEGGQQPLYRRLPK VG+PMGPGH+K  +NLIK D +NG  EG+TV+F SL  AG VTK K+  HKVV G  E    G+TVQAH FT SA  AIE  GGKC+LLSPTT  VL
Sbjct:   33 TATGPTMKVFDWKRREADESAINDAETFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKTDEINGAAEGSTVSFGSLFEAGDVTKAKYGIHKVVTGKKEFSAKGVTVQAHAFTNSARAAIEGAGGKCELLSPTTGAVL 222
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BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A7S2K337_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K337_9STRA)

HSP 1 Score: 243 bits (619), Expect = 6.500e-78
Identity = 125/205 (60.98%), Postives = 148/205 (72.20%), Query Frame = 1 
Query:   73 FTGQQLTAGTSAPSRTTSGVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLS 675
            F+G QL   TS  S     + MK++DWKRRE+++  + D       +D +KPAPGSR+R  RKGRGI+AGQGA+CGFGMRGQK+RSG   R GFEGGQQPLYRRLPK VGRP GPGH K  +N IKL  LNG  EG+TVNF+SL      TK+K+  HK+VGG EL   GLTVQAH FTKSA EAIEA GGKC+LL  TT EV++
Sbjct:   23 FSGNQLQCTTSNQSN----LNMKLYDWKRREADESAINDVENFEFTLDNIKPAPGSRKRFTRKGRGISAGQGATCGFGMRGQKARSGRPTRPGFEGGQQPLYRRLPKFVGRPTGPGHEKTIYNTIKLSELNGAAEGSTVNFDSLFETKATTKSKYSIHKIVGGTELTAKGLTVQAHAFTKSAREAIEASGGKCELLKATTGEVIA 223
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BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A448ZNF8_9STRA (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNF8_9STRA)

HSP 1 Score: 238 bits (606), Expect = 6.100e-76
Identity = 125/206 (60.68%), Postives = 154/206 (74.76%), Query Frame = 1 
Query:   73 FTGQQLTAGTSAPSRTTSGVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETT-GLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLS 675
            FTG +L A +++ + T S   MK+ DWKRR +++  + D       +D+L+PAPGSR++  RKGRGI+AGQGA+CGFGMRGQKSRSG   R GFEGGQQPLYRRLPK  GRPMGPGHTKK++NLI+LDALNG+  G+T NFESL  +  VTK+KH  HKVV G E  T   +TVQAH FTKSA  AIE  GGKC+LL P+T EV++
Sbjct:   21 FTGTRLAAVSTSSANTLS---MKLHDWKRRTADESDINDVENYEFTLDSLRPAPGSRKKKTRKGRGISAGQGATCGFGMRGQKSRSGRPTRPGFEGGQQPLYRRLPKFTGRPMGPGHTKKEYNLIQLDALNGVAPGSTCNFESLFESKAVTKSKHSTHKVVVGREEFTAKDITVQAHAFTKSARAAIEGAGGKCELLKPSTGEVIA 223
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BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A7S2V549_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V549_9STRA)

HSP 1 Score: 236 bits (601), Expect = 5.170e-75
Identity = 137/230 (59.57%), Postives = 168/230 (73.04%), Query Frame = 1 
Query:   28 LFCVGAANAFFAPTAFTGQQLTA--GTSAPSRTTSGVTMKIFDWKRRESEDGLVLDRVAVD--TLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTK----TKHRWH-------KVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 672
            L  +GAA AF +P++F GQQL    GTS     T+ V+MKI+DWK R+ ++   +D V      L+PAPGS +RHKRKGRGIAAGQGASCGFGMRGQKSRSG  VR GFEGGQ PLYRR+PK+ GRPMGPGH K ++ L++ + L+G++EG+TVNFESLRAAGK+ K    TKH+ +       KVVGG +L T GLTVQAH FT SA +AIE  GGKC +LS TTN+ L
Sbjct:    9 LAILGAAVAF-SPSSFGGQQLARVQGTS-----TNTVSMKIYDWKNRQ-KNWKHIDEVEFTHTNLRPAPGSTKRHKRKGRGIAAGQGASCGFGMRGQKSRSGKSVRPGFEGGQTPLYRRIPKIRGRPMGPGHQKIEYALMQFNFLDGVEEGSTVNFESLRAAGKMPKQGKRTKHKRNSGNHQLIKVVGGRDLNTKGLTVQAHAFTASAKKAIEEAGGKCVVLSKTTNKPL 231
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BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A1E7FLQ7_9STRA (Ribosomal protein L15 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FLQ7_9STRA)

HSP 1 Score: 234 bits (598), Expect = 1.470e-74
Identity = 116/187 (62.03%), Postives = 142/187 (75.94%), Query Frame = 1 
Query:  127 GVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETT-GLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 672
            G+TMK++DWKRR++++  + D       +D L+PAPGSR+   RKGRGIAAGQGA+CGFGMRGQKSRSG   R GFEGGQ PLYRRLPK  GRPMGPGH+KKQ+N+IKLD LN +D G+  NFESL  AG VTK+K+  HK+V G +  T   +TVQAH FTK+A  AIE  GGKC+LL P+T EV+
Sbjct:   44 GMTMKLYDWKRRDADESAINDVESFEFTLDNLRPAPGSRKSRTRKGRGIAAGQGATCGFGMRGQKSRSGRPTRPGFEGGQTPLYRRLPKFTGRPMGPGHSKKQYNIIKLDQLNNVDSGSVCNFESLFTAGSVTKSKYDTHKIVVGKDDFTAKDITVQAHAFTKTARTAIEDAGGKCELLKPSTGEVI 230
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BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A5J4Z048_PORPP (50S ribosomal protein L15 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z048_PORPP)

HSP 1 Score: 233 bits (595), Expect = 3.040e-74
Identity = 125/223 (56.05%), Postives = 151/223 (67.71%), Query Frame = 1 
Query:   25 ALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTSGVTMKIFDWKRRESE---DGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDE 684
            A F   + +AFFA        +     A  R     +MK+FDWK+R +E       +  ++V T+ PAPGSR+R  RKGRG+AAGQG SCGFGMRGQKSRSG   R GFEGGQ PLYRRLPK VGRPMGPGHTK  +NL+KLD LN   EG  V F++L  +GK+TK K +  K++GG EL    LTV+AH FT SAVEAIEA GGKC LLSPTT E ++M+E
Sbjct:    2 AAFVGASGSAFFAAQRTASVNVAVCGKAGVRRAVAPSMKVFDWKKRGAEAYSGRAEMGEMSVTTVIPAPGSRKRKTRKGRGVAAGQGRSCGFGMRGQKSRSGNPTRPGFEGGQTPLYRRLPKYVGRPMGPGHTKTMYNLVKLDILNKCAEGEVVTFDALVESGKMTKGKFKLAKIMGGAELTVKNLTVKAHAFTSSAVEAIEAAGGKCVLLSPTTGEDINMEE 224
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKW4_ECTSI4.880e-16198.71Chloroplast 50S ribosomal protein L15 n=1 Tax=Ecto... [more]
A0A835Z4H5_9STRA2.590e-9264.76Chloroplast 50S ribosomal protein L15 n=1 Tax=Trib... [more]
A0A836CHQ3_9STRA1.380e-8764.19Chloroplast 50S ribosomal protein L15 n=1 Tax=Trib... [more]
A0A7S1BKP2_9STRA2.180e-7966.67Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1BF06_9STRA1.770e-7866.32Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2K337_9STRA6.500e-7860.98Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A448ZNF8_9STRA6.100e-7660.68Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A7S2V549_9STRA5.170e-7559.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1E7FLQ7_9STRA1.470e-7462.03Ribosomal protein L15 n=1 Tax=Fragilariopsis cylin... [more]
A0A5J4Z048_PORPP3.040e-7456.0550S ribosomal protein L15 n=1 Tax=Porphyridium pur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig98contigEcto-sp13_S_contig98:9484..14328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score453.8
Seed ortholog evalue5e-125
Seed eggNOG ortholog2880.D7FKW4
Preferred namePRPL15
Model size699
KEGG koko:K02876
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categorychloroplast
GOsGO:0000311,GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009547,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0019538,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons6
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0200@1,KOG0846@2759
Ec32 ortholog description50S ribosomal protein L15, chloroplast
Ec32 orthologEc-17_001600.1
Cds size699
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig98.21452.1prot_Ecto-sp13_S_contig98.21452.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig98 9484..14328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464243.849591-CDS-Ecto-sp13_S_contig98:9483..95321681464243.849591-CDS-Ecto-sp13_S_contig98:9483..9532Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 9484..9532 +
1681464243.8641891-CDS-Ecto-sp13_S_contig98:9844..99761681464243.8641891-CDS-Ecto-sp13_S_contig98:9844..9976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 9845..9976 +
1681464243.8751547-CDS-Ecto-sp13_S_contig98:10756..109951681464243.8751547-CDS-Ecto-sp13_S_contig98:10756..10995Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 10757..10995 +
1681464243.8891444-CDS-Ecto-sp13_S_contig98:11579..116611681464243.8891444-CDS-Ecto-sp13_S_contig98:11579..11661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 11580..11661 +
1681464243.8989124-CDS-Ecto-sp13_S_contig98:13915..139951681464243.8989124-CDS-Ecto-sp13_S_contig98:13915..13995Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 13916..13995 +
1681464243.9077713-CDS-Ecto-sp13_S_contig98:14211..143281681464243.9077713-CDS-Ecto-sp13_S_contig98:14211..14328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 14212..14328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig98.21452.1

>prot_Ecto-sp13_S_contig98.21452.1 ID=prot_Ecto-sp13_S_contig98.21452.1|Name=mRNA_Ecto-sp13_S_contig98.21452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp
MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTSGVTMKIFD
WKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMR
GQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDAL
NGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTK
SAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE*
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mRNA from alignment at Ecto-sp13_S_contig98:9484..14328+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig98.21452.1 ID=mRNA_Ecto-sp13_S_contig98.21452.1|Name=mRNA_Ecto-sp13_S_contig98.21452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4845bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98:9484..14328+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGCTACTCTTGCGACCACCGCACTGTTTTGCGTGGGGGCAGCGAG
TGAGTACATGCATGATTTTCTTGTTACGGCTTGGGAGCGTCAGCTCGCTG
ATTGAGCTTGACGTGCAGGACCACCCGACAACCTTGAAGACGCATGTCGT
CTTTGCTTCACCCTCTTACCTGTCGGCTCTACCGATCGTATCGATTGCAG
TTTGGTTCAACTTGGTGAGAGATGACCATCCTATGCGATATTGTAAAGTG
TTGTGCTTTTTGAAACCTCCCAGCGGCTATAACGAGGGCGTGTGCGGCAG
CGGGTGACTCACAAACATACCACATGTGTGACTGCATGAACCCTTTCCAC
CGGCGGAGCAGATGCGTTCTTCGCTCCCACTGCCTTCACCGGTCAGCAAC
TGACAGCGGGGACCAGTGCACCATCGCGTACGACGTCGGGTGTAACCATG
AAGATCTTCGACTGGAAAAGAAGAGAAAGCGAGGATGGCCTAGGTGAGCG
CTTTCGTCTGCCTTGCGATCGTAGGAAAAGCGTGGCAGTAACCGACCCTT
TTTTGTTGTTCAGGTTGTTGTACTTGTAAATGCCTGTTCCTGCATTCGTA
CATCCAGTTGGTTTTTCTCTACTAGCCTACAGACCCACGGCACAATTCGT
TGGTGTGGGTAGCTCTGAGTGTGGCGCTTCATCGAACAAGCTAACGCTAT
CTTGTGCTGTAAACAAAACATCAGTTTCATATCTTGTACGGGTCAGGGTA
ATAATTTCTCAATATATACATCAACCCGCTCGACATGAGTTTTTGTTTCA
GACGTTGGCGAACCAGTCTCGATGCACACGGGGCTCATAAAAATGAAATT
CCAGACAACACCCCATTCCCAGCAGGGGTTGGTGTTGCAATACGGATGTT
GAGGTTTGCCTTAAGTCGATACGGCATCCAGTGCTGCACTCTAGTCGGAA
TATTCGCTCTTGCCGCGTACCAGGTGGTGTTCAAACAACAGATTTAGCTG
AAGCGACACAGCAATGTGGAGCAAATTCGTTACGGTCAAGCTGAAGTTGG
ACCAAGTTTGTGAGTCAACCTAAGCAGGCAGTGGTGTGTGTTGGGCGCTC
AATATTAGAGCAGTAGCTTCGGAGACAAAACCTTTTCTCTGTATTAGGTG
GACATGTTAATTATGGAACATGCATGCCGAGTCGCATCGCTGATGTTCTC
CACAGCTATATGTACGCGCCTATTGAACCGAAGTACCTCCTGTTGTTTCG
GTTGGGATGTTTCGCGGCGCCAGTTCTTGACAGGGTCGCTGTGGACACCC
TCAAGCCTGCACCGGGCTCGCGCCAACGCCACAAGCGTAAGGGTCGCGGT
ATCGCTGCCGGGCAGGGGGCATCATGTGGTTTCGGTATGCGAGGGCAAAA
GTCTCGCTCCGGCCCTGGAGTGCGAGCAGGTTTCGAGGGCGGGCAACAGC
CTCTTTACCGCCGCCTACCCAAGCTAGTTGGCCGCCCTATGGGCCCTGGC
CACACCAAGAAGGTTGGTAGGGTGTTATGGTTGCTGTTGTGGATGAATGC
TCGTGGTCATTGAACTTCGCGAGTATGACTGCCGAGAGGTAGGGAGCGCA
TCACGGCAAATGCCACACTGAGACAGTTGATTGCGGCCGAGTTTCCGATA
ACGATTGTCTTGAGTTGTGTTTCGCGGCCAGGGTCAGCTTGGGAGTATGC
ATGACTCCTGCATTCCGCGCATCCCTGTCACTCGAAAGTGTGGAAGGAAG
ACCACGTTGTTGTGCTGTTTGGCTCCATAGGAATCCGAAAAAATCATGAA
CATGCTTAAGTTTGCGTTATATGGGGTGGCATGGAAGTCAAGCCCCAATT
GACCAATGGAAAATGGGCGTGATTGTACGTGATGAAACGACCTCCACCTG
AAACTCCATGGTCGCCATCTGTCTTCGACCTACGTGTTCCTGTTCCTGTT
CGCGAGGAGTATTGTCGAATGACGCCAACTGCCCTGCCTGTGTGCCTGCT
TGTAGTGGTACGGTTTGGACTCTCTCGTTGTCGCCCCCCCCGCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCTCCCCATGCAAAAGCAAT
TCAACCTCATTAAGCTGGACGCCCTCAATGGAATGGATGAAGGTGCCACC
GTTAACTTCGAATCGCTTCGTGCGGCCGGTGAGTCATGTTGCAATTTCTG
CGCTGTACCTCTCAACCGTGTTGCAAGTGCCGTCCCCAAGTTTCCGTCGG
ATCTTTAGAAACCGCGTCTCTGCTTCGGCCTGCGGGGTGCCTTCGGCGGC
GGGGGTAGCGCGGACAGAGGAGAGAGCTTCCGAGTACATCTGCTGAGATC
AAGACACACCATTACATGCGCTTCTTCGACCACCGCCGTAGTTGCAGTGC
ATGAACCTACTCTATATCTCAACGCAGACATCGGGTGTTTTGTGCGGCGG
GTGTGCTTGCCTAAGATGAGCGGAAGTCACGACTCTTGCTCTTGTTCTTA
CAGTAGAACTGGGAATGCAGGTGAGCTGCAGACGGCAGGGTCCCACGCAC
GCAGCTGGCTCTATATGAAAGTGTTCTTCGCCGCAATCACATCACCACAT
AGGCAGCTCCTAGGCCAGTTAAGCCCTTTGCTGCCAGGGTCTGTAGAGAT
CTTGCATACAGTTGTCTAAGTTTGCCAATAGAGAGACCAAGAAGATATCC
GCATCTCAAGCGCCACCATAACGTCAGATGTTGAGGGCCATAAGATCCCG
CACGAATGAAACTGCTCCAACGCGTGACTGGTCCATTATTCTCTCGCTCA
GTTATTTCCCTTTTCGTTTCCGGTAGTTGGTGCGCCTGCCACAAGTGTAT
TTTGTTTAGTCAATGTACAAAGCGTGACATGCCACCCTCACGCTTCTAAA
CTACTGGCAACCATTGTCACCTTGTTTGGTGGAGATCAAGTTTCTTCTCG
GTGACAACAGTCGTAGCGTCCACTGAACCAACTATAACCACACCCTGTAC
AACTACCTTAGTTGGTAGTTGTTTGCCAGACAACTGCTCTACCCAGAGGG
TGTGCACCTAGTTGTCTGCAGACACCTACTGGTTCAGATCTGTGCGCACC
TAGTTGCCTGTAGACACCTACTCTTCCAGGAGCGTGTGCACCTTGTTGCC
TCCAGACACCTACTCTTCCAAGAGGGTGCGCACCTAGTTGCCTGCAGACA
CCTACTCTTCCAGGAGGGTGCGCACCTAGTTGCCTGCAGACAACGACTCT
TCCAGAATCGTGCGCACCTGGTTGGCCACCTACTCTTCCAGAATTGTGAA
CATCTAGTGCCTGTAGATGCCTACTCTCCCAGGAGCGTGCGCACCTAGTT
GCATGTAGATGACTACTTTTCCATGAGCGTGCGCACCTAGCTGCCTGCAG
ACACCTACTGGTTCAGATTTTGTGCGCACCTAGGCGTTTACGAACAACTA
GCCGGTGGGTGTCTGACAAACATCTAACCTAGCTGGCTTATTAGTTGAAG
TAGTATAGTAGTATTGGTGGTGGTGTAAGGTCGTTTCTGCGCAGAAAAGG
GGGGTAGAGGAGGAAGATCAGGCCAACAGTAACCTTTATCGATCTTTTCC
TGATGAAGCAAACCACGACAAACGCAAGCGTGCTGTGTGATATTCAGCGA
GCACGACACCTGCCCGTCCGTGTGTATATGTGAGTGCGAGCGCGTGGAGT
AGTCCCCTGCTGTGCCGGCAGCAACATATTGTTTTATATTGACACCTGCG
TAATCAGTCAACCTGTGTGTGTGCGTGAGGTATGCAGTAGTCCAACTGCA
GTAGTCCACCTGTTCCGGCAAATATTTGTTTTATGTTGACATCTGCCCGT
GCCTGTCTGTGTCTGTGTGTTTGTTATAATAGTGCGATTCTGTGGTTGAC
AACTGCCCGGGCAACCAACAACATGTTCCATATTGACAGCTGCCAGGGCA
CCTATTATTATAGTTGCCTGCAAACACCTACTCTTCCGGGAGCGTGCGCA
CCTAGTTGCCTGCAATCACCTACTCTTCCAGGAGCGTGAGCACCTAGTTG
CCTGCAGCCACCTTCTGGTTCAGAATCGTGCGCACCTAGCGGCCTGCAGA
CACTTACCTTCCAGGAGGGTGCGCACCTAGTTGCCTGTAGATGACTGCTC
TTTCAGGAGCGTGCGCACCTAGTTGCCTGTAGATGACTACTCTTACAGGA
GCGCGCGCAACTAGGTGTTTACGAACAACTAGCCGGAAGTTGTCTGGCAA
ACAACTAACTTAGTGGTATATTAATTAAAGTTGTACAGGGTGTGAACTGT
ACCCACTCGGTATAGATATTTTTTGGTTTAACGTGGGAAGGACGTTTTAC
GGGAGACACTTCGTGGTTGAACGACTATATGGGATAATGTGGTCACAGAA
TGCGCTGTACACTGCCCGAAAAATATGATCAGGTAAAGTCACCAAGACCA
AGCACAGGTGGCACAAGGTTGTGGGTGGAATGGAGCTGGAAACAACAGGG
CTGACAGTACAGGTACGAGGAAAGACTGTGCGAATGGCGTCAGTATTTTT
GCCGTAGATTTTCTCCCGTGACATAAGACGCATGCATGTTCGTTGAAATT
CGATCGGAGCTGCCACCGGCGAACGCGCCCTTCAGTATTGCGACAGTTCC
ATGACGTATCGCGCGGGGGGAGTTGACCATTGCACCGGAACACGTTCTAT
CCGTTTCTCCTTCTATTCCGTGCTTCAGGCCCACGGGTTCACGAAGAGCG
CAGTTGAGGCGATAGAGGCCAAGGGCGGGAAATGCCAACTGCTTTCCCCG
ACGACGAATGAAGTTTTGTCGATGGACGAGGAGGAGGAAGAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98:9484..14328+

>mRNA_Ecto-sp13_S_contig98.21452.1 ID=mRNA_Ecto-sp13_S_contig98.21452.1|Name=mRNA_Ecto-sp13_S_contig98.21452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98:9484..14328+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGCTACTCTTGCGACCACCGCACTGTTTTGCGTGGGGGCAGCGAA
TGCGTTCTTCGCTCCCACTGCCTTCACCGGTCAGCAACTGACAGCGGGGA
CCAGTGCACCATCGCGTACGACGTCGGGTGTAACCATGAAGATCTTCGAC
TGGAAAAGAAGAGAAAGCGAGGATGGCCTAGTTCTTGACAGGGTCGCTGT
GGACACCCTCAAGCCTGCACCGGGCTCGCGCCAACGCCACAAGCGTAAGG
GTCGCGGTATCGCTGCCGGGCAGGGGGCATCATGTGGTTTCGGTATGCGA
GGGCAAAAGTCTCGCTCCGGCCCTGGAGTGCGAGCAGGTTTCGAGGGCGG
GCAACAGCCTCTTTACCGCCGCCTACCCAAGCTAGTTGGCCGCCCTATGG
GCCCTGGCCACACCAAGAAGCAATTCAACCTCATTAAGCTGGACGCCCTC
AATGGAATGGATGAAGGTGCCACCGTTAACTTCGAATCGCTTCGTGCGGC
CGGTAAAGTCACCAAGACCAAGCACAGGTGGCACAAGGTTGTGGGTGGAA
TGGAGCTGGAAACAACAGGGCTGACAGTACAGGCCCACGGGTTCACGAAG
AGCGCAGTTGAGGCGATAGAGGCCAAGGGCGGGAAATGCCAACTGCTTTC
CCCGACGACGAATGAAGTTTTGTCGATGGACGAGGAGGAGGAAGAGTAA
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