mRNA_Ecto-sp13_S_contig126.2146.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig126.2146.1
Unique NamemRNA_Ecto-sp13_S_contig126.2146.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig126.2146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig126contigEcto-sp13_S_contig126:12774..14603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size365
Hectar predicted targeting categoryother localisation
Exons3
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462671.9498568-CDS-Ecto-sp13_S_contig126:12773..128331681462671.9498568-CDS-Ecto-sp13_S_contig126:12773..12833Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig126 12774..12833 +
1681462671.9630132-CDS-Ecto-sp13_S_contig126:13914..140851681462671.9630132-CDS-Ecto-sp13_S_contig126:13914..14085Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig126 13915..14085 +
1681462671.973933-CDS-Ecto-sp13_S_contig126:14471..146031681462671.973933-CDS-Ecto-sp13_S_contig126:14471..14603Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig126 14472..14603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig126.2146.1prot_Ecto-sp13_S_contig126.2146.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig126 12774..14603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig126.2146.1

>prot_Ecto-sp13_S_contig126.2146.1 ID=prot_Ecto-sp13_S_contig126.2146.1|Name=mRNA_Ecto-sp13_S_contig126.2146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
MERERATAEGAEVFKSLPPKTKREISNLRKLEASLAARYELCVERIKKLL
LSRGFSPAVAQGMDHSTEHFEPSKLRKWTAMERRKEGFLHSLTPQLEKWR
ARIIATTAILEEEQARRDSEA
back to top

mRNA from alignment at Ecto-sp13_S_contig126:12774..14603+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig126.2146.1 ID=mRNA_Ecto-sp13_S_contig126.2146.1|Name=mRNA_Ecto-sp13_S_contig126.2146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1830bp|location=Sequence derived from alignment at Ecto-sp13_S_contig126:12774..14603+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGAGGGAACGAGCCACCGCCGAAGGAGCAGAGGTTTTCAAGTCCCT
TCCTCCGAAAGTAGGTTGTGAGGGTAGGTCGGGCTACGTGGCTGTGGTGG
TCTCGGTGTCATGCTCACCCTTGCTCGACGTTGTCGTTTGTTGTTCCTTG
TAGAGCCTATTCTACTCTCTCATAGTGCTCACTCGACAGATCGACACGTA
CTTCATAGATTCGAGAGGGTTCCACCCGTGCTCAACACAACGAGTGTAAC
GTCACCAAGACTCTCCAGCATCGTTTTACTCCAAAACCCACCTTGCTCCT
GAGGGTACCTTACCATATGTGGTATGTCTCACCCCGCGCCCCCCTCCTCA
GCTGACTCTCAAACTCCAATGCAGTGTTGTCTCGCCGCAACATGAGCACG
TAAATCTGAACAGTGCGGGCTTGGAACGTCCGGTCGGTCCGGGTACATGT
GTGCAAAGTGCAGAGCGAGCGTTAGCTGTCCAGCTCCTTGAAGAGCCATG
AGTGTTGTCCGGTCACTCTAGGTTGGGGGCAGTACGCAAGTCACTAAGAC
AGCTTGCCAACCTGCACTGGTTGTAGGCGTAAGCACCGGCAGGCAAGAGA
AAGCCAGCAAGCAGGCAACCCAGCGGTTTTTGGATTTCCGCGACCGAAAC
GGAAACAGCAAATATTATGGTGCACTTTCAAGATGGTCTGCCCACAATTG
TTTTTGTTCGCGCAACTGCTTAACTTTTTGGGTTTGCTTCGGTTTTGCTT
CTTGTTCACTTACTGTGCACCCCCCATTGTTCAGGGCCGATCGGAGCCAC
CGAAAGTGCCTCGTCTTGTTCACGAGGGCAGCAAAACCACATACAGACTA
GATACATGGCACTCATTTTCTATCCCACGTGTGTGGCAACAAGTCCGTGT
TCCTCTTCTCCCCCCTCACACGCAACGGACGTCGTTTCAAAGGTCAACCA
TAGCGCGGTCGACCGTAGTTAACAAGACAAACACAACCGCTCTGAGCCGC
GCACATCTTCCATGGACGTCCCACTCTTTGGTGCCCCTCCCGCGCTCCTC
TCCAATCGAAGCACCAACGCCTGTTGACATCTGGTGCACCCCCTCCCGCC
TGACCGATGTCGTTTTACCCCCCCCCTATGTCGAACAACAGACCAAACGA
GAAATATCAAATCTCAGAAAACTGGAGGCGTCGTTGGCCGCTCGGTACGA
GCTGTGTGTCGAGCGCATCAAGAAACTCCTTCTCAGCAGAGGATTTTCAC
CCGCAGTAGCCCAGGGTATGGATCATTCCACCGAGCATTTCGAGCCTTCA
AAACTACGCAAGGTGTCGTTGAGTTGGATGCGGTTGGATCGGGACTGTGT
TAGGCTTGACTGTGGGAGGGTTGGGCCGATTTCCGGTGGGGGTGGGGCTA
GGAGTGGGGGCGTGGTGGAAGGGAGAAGGTGGATTGATGATAACATGAGG
GAGGTATCGATGCTGATGCGTTTTCAACCACGTTGTGTAAAGGTGGATTG
ATGATTACATGAGGGAGGCTTAGATGTTGATGTGTTTTCAACCGCATTTT
GCGTCCCGTGTCCCCGACGATTGTTTGGGGGAACACTGGGAGAAAAATGA
GCGGGACGGGGCAGAACAGGTGTGCTTGCCACCCATCGCTAACATAACGT
GAAACACACCTACACCAACAACAACAACGGCGTTGACACCTGTTGCAGTG
GACTGCAATGGAGCGTAGGAAGGAGGGGTTCCTCCACTCTCTCACGCCAC
AACTCGAGAAATGGCGGGCACGCATTATCGCTACCACCGCCATTCTGGAA
GAGGAACAGGCTCGAAGGGACAGTGAGGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig126:12774..14603+

>mRNA_Ecto-sp13_S_contig126.2146.1 ID=mRNA_Ecto-sp13_S_contig126.2146.1|Name=mRNA_Ecto-sp13_S_contig126.2146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig126:12774..14603+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGAGGGAACGAGCCACCGCCGAAGGAGCAGAGGTTTTCAAGTCCCT
TCCTCCGAAAACCAAACGAGAAATATCAAATCTCAGAAAACTGGAGGCGT
CGTTGGCCGCTCGGTACGAGCTGTGTGTCGAGCGCATCAAGAAACTCCTT
CTCAGCAGAGGATTTTCACCCGCAGTAGCCCAGGGTATGGATCATTCCAC
CGAGCATTTCGAGCCTTCAAAACTACGCAAGTGGACTGCAATGGAGCGTA
GGAAGGAGGGGTTCCTCCACTCTCTCACGCCACAACTCGAGAAATGGCGG
GCACGCATTATCGCTACCACCGCCATTCTGGAAGAGGAACAGGCTCGAAG
GGACAGTGAGGCG
back to top