mRNA_Ecto-sp13_S_contig98.21450.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig98.21450.1
Unique NamemRNA_Ecto-sp13_S_contig98.21450.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98.21450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig98contigEcto-sp13_S_contig98:2407..5696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1596
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-17_001620.1
Cds size1596
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig98.21450.1prot_Ecto-sp13_S_contig98.21450.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig98 2407..5696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464243.5957508-CDS-Ecto-sp13_S_contig98:2406..28411681464243.5957508-CDS-Ecto-sp13_S_contig98:2406..2841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 2407..2841 +
1681464243.6150444-CDS-Ecto-sp13_S_contig98:3040..31841681464243.6150444-CDS-Ecto-sp13_S_contig98:3040..3184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 3041..3184 +
1681464243.627388-CDS-Ecto-sp13_S_contig98:4072..42191681464243.627388-CDS-Ecto-sp13_S_contig98:4072..4219Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 4073..4219 +
1681464243.6431248-CDS-Ecto-sp13_S_contig98:4507..47471681464243.6431248-CDS-Ecto-sp13_S_contig98:4507..4747Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 4508..4747 +
1681464243.6592348-CDS-Ecto-sp13_S_contig98:4861..52871681464243.6592348-CDS-Ecto-sp13_S_contig98:4861..5287Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 4862..5287 +
1681464243.6712728-CDS-Ecto-sp13_S_contig98:5492..56961681464243.6712728-CDS-Ecto-sp13_S_contig98:5492..5696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 5493..5696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig98.21450.1

>prot_Ecto-sp13_S_contig98.21450.1 ID=prot_Ecto-sp13_S_contig98.21450.1|Name=mRNA_Ecto-sp13_S_contig98.21450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=532bp
MTRPGSAEIGNPRGHTTGEGNIEQELLLKIGQLAKHHARNVQALNRLRST
TSAPPTTAWEGVAVPPPRGRPNPVELRRRATPKGDPNLKSARSQHHSFSP
SDRVFTRVVDSSSTRKKLEPTVVKPFRGMETHVTAWTRKMRAYEELEIRT
KKDEEEANARDRERLITAINDGREFSGVITRSNEMMARRRQRETEAEEND
DEARRSHEFKARPLHIADEDWQTIKDRQSLRRKQRIQMRMDLMSSLSYLP
RRMAMHALKRKAAASTTAEFPENGDSPSETKARTRYKSVSPGQIREVLAR
RQRLWDQQLAAARRKKKPVVPQVLPMEERENVYRQRAKERARRKQDKSLT
EEIRQRPRRKKVPLAATVPVVPRSTNSFSLKTAHVRARLAGEKSDLKRQK
QEELARRTRQQAMSKTISKVMRRMDYQQTRLARRPTAAEARQTARESQER
YHVCLKENKQKLEQATRNAPTLWERHDAEVRKEAAKRIALSTMAERVFGA
GSVGAERENLRGSGIDKFFDEEERALLCCAN*
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mRNA from alignment at Ecto-sp13_S_contig98:2407..5696+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig98.21450.1 ID=mRNA_Ecto-sp13_S_contig98.21450.1|Name=mRNA_Ecto-sp13_S_contig98.21450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3290bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98:2407..5696+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCGTCCTGGATCCGCGGAAATAGGAAACCCACGAGGCCATACTAC
TGGTGAAGGCAACATTGAACAAGAATTACTCCTCAAAATTGGTCAACTTG
CCAAGCATCATGCTAGAAACGTCCAAGCTCTCAACAGGTTGAGGAGCACC
ACCAGCGCACCTCCGACAACGGCATGGGAAGGTGTCGCCGTTCCACCACC
GAGGGGACGCCCCAATCCTGTCGAACTCAGAAGAAGAGCAACACCAAAGG
GCGATCCCAACCTGAAAAGTGCTCGTTCACAACATCATTCATTCTCGCCA
TCCGACCGCGTCTTCACTAGAGTTGTCGATTCTTCGTCGACCAGGAAGAA
GCTGGAGCCCACAGTGGTTAAGCCGTTCCGCGGTATGGAGACTCATGTAA
CCGCCTGGACCAGGAAAATGAGGGCCTATGAGGAGGTGAGCTACTTTCTG
TGGTGACATGAAACATCAAAGACGATGTGGGCTGGAACTGGAACGTTGCC
CCTAATGCACAACACAACCAACACTTTGCAACTGATCCGGTTGGCTGTGA
CCATTGCGTCAGTAAAACTCTAATAGGTGAATACTGTTCCACAAACTTTG
TCACCTACGACCAACCTCAAACGATCTACCATAGCTTGAAATTCGAACGA
AGAAGGATGAGGAGGAAGCGAACGCCAGAGATCGCGAGCGCCTCATCACG
GCCATCAATGACGGAAGGGAATTTTCCGGCGTCATTACTCGATCAAATGA
AATGATGGCGCGACGCCGACAAAGGGAGGTGAGCCACAAAAACCCCATTT
TCCATGGCACCTTTGTGGTGGCGAGGAGTATCCAGCGTTGATCAACCGTG
GGAACATCAGTGGGTTAAAACAAGATCCCTCTGGACCCGCCCAAGTTGTG
CTCCACACTAATCCATGCAGATGTGTCACAGTCTTTGTTCGGGTTGTTGC
GGTGGGCGGGTTGACTTTCTTTCGTTGATGTATTGCGCCGGTGTTTTGAG
ACCTATTGGACTCGACGTAGACTGGTGCTGATCGATGGTAAATGAAAATG
CATATATGTACGTTGTATTGGCAACGATTGAGGTGTACTTTACGATGTAG
TGGGTACGGAAATAGTCATGCTTTGATGAGGCAAATATATCTTTCCCGGG
CAAAAAAGCACGGTCCAGATGCCTGCATTGGAAGGGCCATTCATACGAAG
AAGTTAGAGAGGCACGTACATGTGTAACTTTGTAAAATCTTCTCCTCTAT
TTGTTGATGTATTGCGCTGGTGTTTTGAGACCTATTGGACTCGACGTAGA
CTGGTGCTGATCGATGGTAAATGAAAATGCATACATGTACGTTGTATTGG
CAACGATTGAGGTGTACTTTACGATGTAGTGGGTACGGAAATATTCATGC
TTTGATCAGGCAAATATATCTTTCCCGGGCAAAAAAGCACGGTCCAGATG
CCTGCATTGGAAGGGCCATTCATACAAAGAAGTTAGAGAGGCACGTACGT
GTGTAACTTTGTAAAATCTTCTCCTCTATTTGTTCTTGATATAGTTGCAC
TCTTTGCAGCTGACGTTATGGTGACGGAGATGCTGCATTTTCTATTTATT
GATGCACACGAATCCACTGGGTGTAGCCAGAAAATTCCTCACGGCGAGGC
TCGTTTCACGAACCAGACAGAAGCCGAGGAAAACGATGACGAAGCAAGGC
GAAGTCATGAATTCAAGGCTCGGCCTCTTCACATCGCCGATGAAGACTGG
CAAACAATCAAGGATAGACAAAGTTTAAGGCGGAAGCAAAGGATCCAGAT
GCGGATGGACTTGGTGAGTGAGACCGTCAGTCTCGTGTGGCACCGCCAGA
CCTGCCCCACCATCGTCCCCTCCTCAGCCAACTAGCAACCGACAAGAAAA
CAGTGTGTTCGGGACGAACCAGTGTACAAAGAGTGGAACTACATGCCATC
TTTCCCCCGATCGATGTGGAACTGCTATAGACAGCTTCCCATCCTGAAAG
ACGGCATCGGTCCATACGCTTTGTAGCGCTCCAGCTTTCGGGCAGTTTTT
ATAGCAAGAATCGTGTCTGCTGCAACTCCAACTTTGGTCGCACTTTGGCA
GATGTCGTCTCTCTCCTATCTCCCAAGGCGTATGGCTATGCATGCGCTGA
AACGCAAGGCTGCGGCTTCTACCACCGCCGAATTTCCTGAGAACGGAGAT
AGCCCAAGTGAGACTAAAGCTCGCACGAGATATAAATCGGTTTCACCCGG
GCAGATCCGAGAAGTGTTGGCAAGAAGGCAGCGCCTATGGGATCAGCAGC
TTGCTGCAGCCAGACGGAAAAAGAAACCGGTGGTACCTCAGGTGTGTTGT
CTCATTCTCGTGTTTATCGCCTGGTCAAGGCTGCACTCGTTCCAGTTCAA
ACCTCAAATTCCACTGCTTCAAACCCTGGTCAACATACGCCTGCTCTACC
TATAGGTTCTCCCAATGGAAGAGAGGGAAAATGTTTACCGACAAAGAGCA
AAAGAGCGTGCTCGACGGAAGCAAGACAAATCGCTTACGGAGGAAATCAG
ACAGCGTCCCCGGAGGAAGAAAGTGCCTTTAGCAGCTACTGTGCCCGTTG
TACCCCGCAGCACAAACAGCTTCTCTCTTAAGACGGCACACGTGCGGGCT
AGACTAGCGGGAGAAAAGAGCGATCTCAAACGACAAAAACAGGAGGAGTT
GGCAAGGCGTACCAGGCAGCAAGCAATGAGCAAGACTATCTCTAAAGTAA
TGAGGCGGATGGATTATCAGCAAACGAGACTAGCTCGTCGACCGACAGCC
GCCGAGGCTCGACAAACGGCCCGGGAATCTCAAGAAAGATACCATGTCTG
TCTGAAAGAGAACAAGCAAAAGCTAGAACAGGTGCGTGCTGATGGGCCAG
CAGTGGCACGGTAAGGACTGCAGGTTGTGCCAAGCTTGCTTTCTTGGAGT
ACTCGCTGGTGGATTACGACAACACAAAATCCAGTGCGGACAAAAACGCG
ATGGTCGGCTGTTGATGAGGAAATGTGCACCAACGAGCAGTTCACTCCAA
CAACCTGATGTGCATTGCCCATACTTCGCTGTGCAGGCCACTCGCAATGC
CCCTACACTGTGGGAGAGGCACGACGCTGAGGTTCGCAAAGAGGCAGCAA
AACGTATCGCGTTGTCGACCATGGCAGAAAGAGTATTTGGAGCTGGATCG
GTGGGGGCTGAGCGTGAAAACTTGAGAGGGTCTGGTATTGACAAATTCTT
TGACGAAGAAGAGCGTGCACTTTTATGTTGTGCGAATTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98:2407..5696+

>mRNA_Ecto-sp13_S_contig98.21450.1 ID=mRNA_Ecto-sp13_S_contig98.21450.1|Name=mRNA_Ecto-sp13_S_contig98.21450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1596bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98:2407..5696+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCGTCCTGGATCCGCGGAAATAGGAAACCCACGAGGCCATACTAC
TGGTGAAGGCAACATTGAACAAGAATTACTCCTCAAAATTGGTCAACTTG
CCAAGCATCATGCTAGAAACGTCCAAGCTCTCAACAGGTTGAGGAGCACC
ACCAGCGCACCTCCGACAACGGCATGGGAAGGTGTCGCCGTTCCACCACC
GAGGGGACGCCCCAATCCTGTCGAACTCAGAAGAAGAGCAACACCAAAGG
GCGATCCCAACCTGAAAAGTGCTCGTTCACAACATCATTCATTCTCGCCA
TCCGACCGCGTCTTCACTAGAGTTGTCGATTCTTCGTCGACCAGGAAGAA
GCTGGAGCCCACAGTGGTTAAGCCGTTCCGCGGTATGGAGACTCATGTAA
CCGCCTGGACCAGGAAAATGAGGGCCTATGAGGAGCTTGAAATTCGAACG
AAGAAGGATGAGGAGGAAGCGAACGCCAGAGATCGCGAGCGCCTCATCAC
GGCCATCAATGACGGAAGGGAATTTTCCGGCGTCATTACTCGATCAAATG
AAATGATGGCGCGACGCCGACAAAGGGAGACAGAAGCCGAGGAAAACGAT
GACGAAGCAAGGCGAAGTCATGAATTCAAGGCTCGGCCTCTTCACATCGC
CGATGAAGACTGGCAAACAATCAAGGATAGACAAAGTTTAAGGCGGAAGC
AAAGGATCCAGATGCGGATGGACTTGATGTCGTCTCTCTCCTATCTCCCA
AGGCGTATGGCTATGCATGCGCTGAAACGCAAGGCTGCGGCTTCTACCAC
CGCCGAATTTCCTGAGAACGGAGATAGCCCAAGTGAGACTAAAGCTCGCA
CGAGATATAAATCGGTTTCACCCGGGCAGATCCGAGAAGTGTTGGCAAGA
AGGCAGCGCCTATGGGATCAGCAGCTTGCTGCAGCCAGACGGAAAAAGAA
ACCGGTGGTACCTCAGGTTCTCCCAATGGAAGAGAGGGAAAATGTTTACC
GACAAAGAGCAAAAGAGCGTGCTCGACGGAAGCAAGACAAATCGCTTACG
GAGGAAATCAGACAGCGTCCCCGGAGGAAGAAAGTGCCTTTAGCAGCTAC
TGTGCCCGTTGTACCCCGCAGCACAAACAGCTTCTCTCTTAAGACGGCAC
ACGTGCGGGCTAGACTAGCGGGAGAAAAGAGCGATCTCAAACGACAAAAA
CAGGAGGAGTTGGCAAGGCGTACCAGGCAGCAAGCAATGAGCAAGACTAT
CTCTAAAGTAATGAGGCGGATGGATTATCAGCAAACGAGACTAGCTCGTC
GACCGACAGCCGCCGAGGCTCGACAAACGGCCCGGGAATCTCAAGAAAGA
TACCATGTCTGTCTGAAAGAGAACAAGCAAAAGCTAGAACAGGCCACTCG
CAATGCCCCTACACTGTGGGAGAGGCACGACGCTGAGGTTCGCAAAGAGG
CAGCAAAACGTATCGCGTTGTCGACCATGGCAGAAAGAGTATTTGGAGCT
GGATCGGTGGGGGCTGAGCGTGAAAACTTGAGAGGGTCTGGTATTGACAA
ATTCTTTGACGAAGAAGAGCGTGCACTTTTATGTTGTGCGAATTAG
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