mRNA_Ecto-sp13_S_contig9796.21447.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9796.21447.1
Unique NamemRNA_Ecto-sp13_S_contig9796.21447.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9796.21447.1 vs. uniprot
Match: D8LGP5_ECTSI (Farnesyl pyrophosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP5_ECTSI)

HSP 1 Score: 740 bits (1910), Expect = 2.730e-267
Identity = 374/401 (93.27%), Postives = 380/401 (94.76%), Query Frame = 1
Query:    1 KRPGATDEPFADQASEILDQAWPVILVVGAMMAVQWGVTLYFGAATASGQVLPIYLTLAAGGAAYFLYQEENVGKAWECFCEFDELAKYAFAVLAVAFSHALARVSPGSSKGSTGASSSSGQGLAVEDSALVIYPRELPDDPKKSFEAMHKFLVKELVDDVADNYEGIPAQLDWIQENLEYNTKGGKMNRGMGVVDVLRAFAEADGRELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYK-----EIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPPPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKV 1188
            K PGATDEPFADQASEILDQAWPVILVVGAMMAVQWGVTLYFGAATASGQVLPIYLTLAAGGAAYFLYQEEN+GKAWECFCEFDELAKYAFAVLAVAFS+ALARVSPGSSKGS+GASSSSGQGLAVEDSALV+YPRELP DPKKSFEAMHKFLV+ELV DVADNYEGIPAQLDWIQENLEYNTKGGKMNRGMGVVDVLRAFAEA+GRELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYK     EIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAP            L RFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKV
Sbjct:   15 KGPGATDEPFADQASEILDQAWPVILVVGAMMAVQWGVTLYFGAATASGQVLPIYLTLAAGGAAYFLYQEENIGKAWECFCEFDELAKYAFAVLAVAFSYALARVSPGSSKGSSGASSSSGQGLAVEDSALVVYPRELPGDPKKSFEAMHKFLVEELVADVADNYEGIPAQLDWIQENLEYNTKGGKMNRGMGVVDVLRAFAEANGRELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVPKVQEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPSD----------LTRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKV 405          
BLAST of mRNA_Ecto-sp13_S_contig9796.21447.1 vs. uniprot
Match: A0A6H5L554_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L554_9PHAE)

HSP 1 Score: 719 bits (1857), Expect = 6.670e-259
Identity = 371/421 (88.12%), Postives = 375/421 (89.07%), Query Frame = 1
Query:   13 ATDEPFADQASEILDQAWPVILVVGAMMAVQWGVTLYFGAATASGQVLPIYLTLAAGGAAYFLYQEENVGKAWECFCEFDELAKYAFAVLAVAFSHALARVSPGSSK-----------GSTGASSSSGQGLAVEDSALVIYPRELPDDPKKSFEAMHKFLVKELVDDVADNYEGIPAQLDWIQENLEYNTKGGKMNRGMGVVDVLRAFAEADGRELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYK------------------EIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPPPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKV 1188
            ATDEPFADQAS+ILDQAWPVILVVGAMMAVQWGVTLYFGAATASGQVLPIYLTLAA GAAYFLYQEENVGKAWECFCEFDELAKYAFAVLAVAFS+ALARVSPG SK           GS+GASSSSGQGLAVEDSALV+YPRELPDDPKKSFEAMHKFLVKELVDDVADNYEGIPAQLDWIQENLEYNTKGGKMNRGMGVVDVLRAFAEADGRELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYK                  EIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAP               FTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKV
Sbjct:   18 ATDEPFADQASDILDQAWPVILVVGAMMAVQWGVTLYFGAATASGQVLPIYLTLAAVGAAYFLYQEENVGKAWECFCEFDELAKYAFAVLAVAFSYALARVSPGCSKVRYGTNRVPTAGSSGASSSSGQGLAVEDSALVVYPRELPDDPKKSFEAMHKFLVKELVDDVADNYEGIPAQLDWIQENLEYNTKGGKMNRGMGVVDVLRAFAEADGRELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKVGRQKQRQTHPEFRVTQSEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAP---------------FTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKV 423          
BLAST of mRNA_Ecto-sp13_S_contig9796.21447.1 vs. uniprot
Match: A0A835YUF9_9STRA (Farnesyl pyrophosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUF9_9STRA)

HSP 1 Score: 373 bits (957), Expect = 2.780e-123
Identity = 196/350 (56.00%), Postives = 241/350 (68.86%), Query Frame = 1
Query:  178 AGGAAYFLYQEENVGKA----WECFCEFDELAKYAFAVLAVAFSHALARVSPGSSKGSTGASSSSGQGLAVEDSALV----IYPRELPDDPKKSFEAMHKFLVKELVDDVADNYEGIPAQLDWIQENLEYNTKGGKMNRGMGVVDVLRAFAEADGRELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWY-----KEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPPPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKV 1188
            AGGA     Q  +  KA    W  F    +  KY  +VL V+  H ++++ P S     G       GL     +L        R+   D K SF ++   L++E++D++A +YE IP QL W++  LEYN KGGKMNRG+GV+DV +AFA++ GR L H E CR ++LGWC+EWLQAFFLVADDVMD S TRRGQPCW+     K+IAIND+FILE+ VFK+L RHF+ E+YYLQL+ELFHDVTYRTEMGQLLDLTSQP+D P          P   RFT  RY MIV+YKTA+YTFYLPCAIGMIYAGV DP+S+ LAR ICC IGE+FQIQDDYLDC+GDP+ IGKV
Sbjct:   19 AGGAVAIAAQMLSTSKAAEGAWHSFVMLPDTDKYLISVLVVSALHFVSKLFPASDDLRLGLGRERYPGLLPRALSLPDPRSTEVRDWEGDLKGSFASLCDVLIEEVLDELASDYEAIPEQLQWMRAMLEYNVKGGKMNRGLGVIDVQKAFAKSSGRTLSHREHCRAAVLGWCIEWLQAFFLVADDVMDDSHTRRGQPCWFRVPHVKQIAINDAFILESLVFKVLNRHFSQESYYLQLMELFHDVTYRTEMGQLLDLTSQPLDKP----------PDFTRFTKTRYAMIVKYKTAFYTFYLPCAIGMIYAGVSDPSSFALARRICCTIGEYFQIQDDYLDCYGDPKFIGKV 358          
BLAST of mRNA_Ecto-sp13_S_contig9796.21447.1 vs. uniprot
Match: A0A835Z5G4_9STRA (Farnesyl pyrophosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G4_9STRA)

HSP 1 Score: 358 bits (920), Expect = 5.590e-117
Identity = 205/413 (49.64%), Postives = 251/413 (60.77%), Query Frame = 1
Query:   28 FADQASEILDQAWPVILVVGAMMAVQWGVTLYFGAATASGQVLPIYLTLAAGGAAYFLYQEENVGKAWECFCEFDELAKYAFAVLAVAFSHALARVSPGSSKGSTGASSSSGQGLAVEDSALVIYPRELPDDPKKSFEAMHKFLVKELVDDVADNYEGIPAQLDWIQENLEYNTKGGK---------------------MNRGMGVVDVLRAFAEADGRELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWY-----KEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPPPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKV 1188
             A Q + +L    PV+LVV  M AV W   L F   +  G  L +Y   A   AA  L    +  +AW         A+ A   L  + S+A +R           AS  +G G A           +   D K SF A+   L++E ++++   Y+ IP QL W++  LEYN KGGK                     MNRG+GV+DV +AFA   GR L + E CR ++LGWC+EWLQAFFLVADDVMD S TRRGQPCWY     K+IAIND+FILE+ V+++L+RHF+ E+YYLQLVELFHDVTYRTEMGQLLDLTSQP+D P          P   RFT  RY MIV+YKTA+YTFYLPCAIGMIYA V DP+S+ LAR ICC IGE+FQIQDDYLDC+GDP VIGKV
Sbjct:   29 LAQQVAHVLG---PVLLVVLGMAAVSWLSGLVFRGKSREG-FLALYFAAAVAVAAQLLVASGDAAEAWRMLSALPASARCAVGALLSSLSYAASRA--------VFASGGAGDGDAAA--------ADWEGDAKGSFAAICDGLIEEALEELKTGYDAIPEQLQWVRAMLEYNVKGGKASHRLKLAVPSHRDAPSAARPMNRGLGVIDVQKAFATKSGRTLSNLEHCRAAVLGWCIEWLQAFFLVADDVMDDSHTRRGQPCWYRVPHVKQIAINDAFILESLVYRVLRRHFSQESYYLQLVELFHDVTYRTEMGQLLDLTSQPLDKP----------PDFARFTATRYAMIVKYKTAFYTFYLPCAIGMIYASVSDPSSFALARRICCIIGEYFQIQDDYLDCYGDPAVIGKV 411          
BLAST of mRNA_Ecto-sp13_S_contig9796.21447.1 vs. uniprot
Match: A0A7S2UU78_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU78_9STRA)

HSP 1 Score: 308 bits (788), Expect = 2.870e-97
Identity = 159/272 (58.46%), Postives = 199/272 (73.16%), Query Frame = 1
Query:  394 VIYPRELPDDPKKSFEAMHKFLVKELVDDVADNYEGIPAQLDWIQENLEYNTKGGKMNRGMGVVDVLRAFAEADG-RELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKE-----IAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPM-DAPHAKHDCAPHPPPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKV 1188
            V YP+ LPDD K++F+  +  L +ELV+D+  NYE     +DWI    +YN KGGK+NRG  VV+V +  A + G ++L   E+ R + LGWCVEWLQAFFLVADD+MD S TRRGQPCWYK+     IAINDSF+LE+ VF++LKRHF  E YY +LV+LFH+V ++TE+GQLLDLTSQPM + PH       H   L RFT  RY++IV+YKTA+YTFYLP A+GMI +G    +   LAR+ICC IGEFFQIQDDYLDCFGDP+V GKV
Sbjct:  136 VTYPQTLPDDLKQAFDVCYISLAQELVNDLPSNYEMPQEVIDWISNMHDYNVKGGKLNRGRTVVEVHQRLAASTGVQKLSARELYRAAALGWCVEWLQAFFLVADDIMDDSETRRGQPCWYKKSDVKMIAINDSFLLESAVFRILKRHFGSEPYYAKLVDLFHEVIFQTELGQLLDLTSQPMTNDPHK------HVVDLTRFTINRYQLIVKYKTAFYTFYLPLALGMITSGHGTASKLSLARNICCIIGEFFQIQDDYLDCFGDPKVTGKV 401          
BLAST of mRNA_Ecto-sp13_S_contig9796.21447.1 vs. uniprot
Match: A0A7S3XXN8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXN8_HETAK)

HSP 1 Score: 299 bits (766), Expect = 2.770e-94
Identity = 150/271 (55.35%), Postives = 195/271 (71.96%), Query Frame = 1
Query:  394 VIYPRELPDDPKKSFEAMHKFLVKELVDDVADNYEGIPAQLDWIQENLEYNTKGGKMNRGMGVVDVLRAFAEAD-GRELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKE-----IAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPPPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKV 1188
            + YP+   DD K +F AM+  L  +LV ++   +E     + WI   ++YN +GGKMNRG+ V  ++R  A  + GR+L + E+ R  +LGWC+EWLQAFFLVADD+MD SLTRRGQPCWY++     IAINDSFILE+ VF++LK+HF HE  Y Q++++FH+V Y+TE+GQLLDLTSQP+D P            L RFT  R+R+IV+YKTAYYTFYL  A+GMI +GV +PA Y  A+ ICC IGE+FQIQDDYLDC+GDP VIGKV
Sbjct:  128 LSYPQLPKDDDKAAFMAMYDHLKHDLVAELPVVFEQPDEAVRWIGGMVDYNVQGGKMNRGLVVPAIMRTLARKNKGRDLTNTELARACVLGWCIEWLQAFFLVADDIMDDSLTRRGQPCWYRKPEVKMIAINDSFILESGVFRLLKKHFGHEETYSQILDVFHEVIYQTELGQLLDLTSQPLDGPTD----------LDRFTVERHRLIVKYKTAYYTFYLSTAMGMIDSGVTEPALYETAKRICCMIGEYFQIQDDYLDCYGDPAVIGKV 388          
BLAST of mRNA_Ecto-sp13_S_contig9796.21447.1 vs. uniprot
Match: W7TD59_9STRA (Farnesyl pyrophosphate synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD59_9STRA)

HSP 1 Score: 296 bits (758), Expect = 4.510e-94
Identity = 149/271 (54.98%), Postives = 197/271 (72.69%), Query Frame = 1
Query:  394 VIYPRELPDDPKKSFEAMHKFLVKELVDDVADNYEGIPAQL-DWIQENLEYNTKGGKMNRGMGVVDVLRAFAEADGRELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWY-----KEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPPPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKV 1188
            + YP  LP D K++F  +   L  EL+ ++   YE +PA+  +W+++ +EYN KGGK+NRG+ VV V R    A GR L   E  R ++LGWC+EWLQAFFLVADDVMD S+TRRGQPCW+     K IA+NDSFILE++VF++LKRHF HE +Y+ L +LF +VT +TE+GQLLDLTSQPMD    + D       L RFTP RY++IV+YKTA+YTFYLP A G+I +G+  PA+   AR +C  +GE+FQ+QDDYLDC+GDP++IGKV
Sbjct:   40 LSYPSSLPPDEKEAFIEICDQLTVELLTELKSRYE-LPAEASEWVKKMIEYNVKGGKLNRGLTVVSVKRTIDAAKGRVLSTREFARAAVLGWCIEWLQAFFLVADDVMDDSVTRRGQPCWFRLPQVKLIAVNDSFILESNVFQILKRHFGHEPFYVTLFDLFREVTLQTELGQLLDLTSQPMDG---QID-------LQRFTPQRYQLIVKYKTAFYTFYLPIACGLILSGMGHPAALTTARRVCVLMGEYFQVQDDYLDCYGDPKLIGKV 299          
BLAST of mRNA_Ecto-sp13_S_contig9796.21447.1 vs. uniprot
Match: A0A7S2JT51_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JT51_9STRA)

HSP 1 Score: 274 bits (701), Expect = 6.850e-86
Identity = 148/274 (54.01%), Postives = 184/274 (67.15%), Query Frame = 1
Query:  394 VIYPREL---PDDPKKSFEAMHKFLVKELVDDVADNYEGIPAQLDWIQENLEYNTKGGKMNRGMGVVDVLRAFAEA-DGRELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYK-----EIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPPPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKV 1188
            + YP E        K  FE +   L  E+++ +  N E      +W +  ++YN  GGK+NRG+ V+ V R   +A +GREL   EV R S+LGW VE+LQAFFLVADDVMD S TRRGQPCWYK      IAINDSF+LE+  F M+K+HF  E YY +L+ELF +V  +TE GQLLDLTSQP  A  +          L RFT  RY++IV+YKTA+YTFYL  AIGMI +GV DP +Y LA++ICC IGE+FQIQDDYLDC+GDP VIGKV
Sbjct:    4 ITYPLEAIAAATTDKAKFETIFPLLRDEMIEHMKQN-EMPEEACEWAKRMMDYNVPGGKLNRGVTVIAVQRTLVQANEGRELTDLEVARASVLGWAVEFLQAFFLVADDVMDDSQTRRGQPCWYKLAEVGNIAINDSFLLESFCFTMIKKHFGMEPYYGRLLELFLEVVQQTEFGQLLDLTSQPATASASSSKID-----LSRFTLERYKLIVKYKTAFYTFYLSVAIGMITSGVTDPEAYSLAKEICCIIGEYFQIQDDYLDCYGDPAVIGKV 271          
BLAST of mRNA_Ecto-sp13_S_contig9796.21447.1 vs. uniprot
Match: A0A7S3GWV7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWV7_9STRA)

HSP 1 Score: 278 bits (711), Expect = 1.060e-85
Identity = 170/402 (42.29%), Postives = 235/402 (58.46%), Query Frame = 1
Query:   40 ASEILDQAWPVILVVGAMMAVQWGVTLYFGAATASGQVL---PIYLTLAAGGAAYFL-YQEENVGKAWECFCEFDELAKYAFAVLAVA---FSHALARVSPGS-------SKGSTGASSSSGQGLAVEDSALVIYPRELPDDPKKSFEAMHKFLVKELVDDVADNYEGIPAQLDWIQENLEYNTKGGKMNRGMGVVDVLRAFAEADGRELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWY-----KEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPPPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKV 1188
            A+EIL    P +  +   +A+   V L   + + + +VL    ++    AGG +Y + +Q+ N+  AWE F +     +++ +++ V    F  A+    P         S+ ST A S      +V+ +     P  LP D K  FE M   L KE++DD+   YE      +W+   + Y   GGKMNRG+  + V    A+  G  L ++E C+ + LGWC+E+LQAFFLVADD+MD S+TRRGQPCW+     K IA+NDSFILE+ V+K+LK++F  E YY QLV+LF + T +TE GQLLDLTSQ + AP            L RFT  RY  IV+YKTA+Y+FYLP A GMI AGV D   Y  AR+I   +GE+FQIQDDYLDC+G PE+IGK+
Sbjct:   14 AAEILQAVLPDLAPLLGALALASLVILISNSFSKTNKVLVQAALFAAALAGGLSYLIVHQDANLVSAWELFIKLSIETRFSLSLVLVGIVYFGGAMYLAPPEDAGKDGVPSEASTNALSVYRTPASVDRAVTFEVPLSLPADDKVFFEEMLDKLCKEILDDLPVTYELGTEATEWVGRMMTYTVAGGKMNRGLATLSVRGTLAKLVGHTLSNKERCQAAALGWCIEFLQAFFLVADDLMDESVTRRGQPCWFRLPEVKTIAVNDSFILESFVYKILKKYFGEEAYYYQLVDLFLETTRQTEFGQLLDLTSQKLGAPID----------LNRFTIERYTGIVKYKTAFYSFYLPVACGMIIAGVTDVHLYDTAREILVIMGEYFQIQDDYLDCYGTPEMIGKI 405          
BLAST of mRNA_Ecto-sp13_S_contig9796.21447.1 vs. uniprot
Match: A0A5D6Y8S8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8S8_9STRA)

HSP 1 Score: 270 bits (690), Expect = 9.440e-85
Identity = 136/230 (59.13%), Postives = 167/230 (72.61%), Query Frame = 1
Query:  514 LDWIQENLEYNTKGGKMNRGMGVVDVLRAFAEADGRELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCWYKE-----IAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLLDLTSQPMDAPHAKHDCAPHPPPLCRFTPVRYRMIVRYKTAYYTFYLPCAIGMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKV 1188
            +DW+ + + YN  GGK+NRG+ V+   +A A+  G EL  E   + SILGWC+EWLQAFFLVADD+MD S+TRRGQPCW+++     IAIND+F+LEA VF++LK+HF  +  YL LVELFHDV +RTE+GQLLDLTSQP+DA           P L RFTP RY  IV  KTAYYTFYL  A  M+ +GV D  S+ LA+ IC RIGE+FQIQDDYLDC+GD  VIGKV
Sbjct:   16 IDWVDQVINYNCLGGKLNRGISVIHSTQALAQ--GAELSPELKRKASILGWCIEWLQAFFLVADDIMDDSVTRRGQPCWFRDPKVQMIAINDAFLLEAFVFQILKKHFRSDACYLPLVELFHDVIFRTELGQLLDLTSQPLDAE----------PDLARFTPERYHQIVVNKTAYYTFYLSAACAMLLSGVADEGSHALAKRICVRIGEYFQIQDDYLDCYGDAAVIGKV 233          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9796.21447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGP5_ECTSI2.730e-26793.27Farnesyl pyrophosphate synthase n=1 Tax=Ectocarpus... [more]
A0A6H5L554_9PHAE6.670e-25988.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YUF9_9STRA2.780e-12356.00Farnesyl pyrophosphate synthase n=1 Tax=Tribonema ... [more]
A0A835Z5G4_9STRA5.590e-11749.64Farnesyl pyrophosphate synthase n=1 Tax=Tribonema ... [more]
A0A7S2UU78_9STRA2.870e-9758.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XXN8_HETAK2.770e-9455.35Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TD59_9STRA4.510e-9454.98Farnesyl pyrophosphate synthase n=2 Tax=Monodopsid... [more]
A0A7S2JT51_9STRA6.850e-8654.01Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3GWV7_9STRA1.060e-8542.29Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A5D6Y8S8_9STRA9.440e-8559.13Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9796contigEcto-sp13_S_contig9796:1018..5730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score745.7
Seed ortholog evalue1.1e-212
Seed eggNOG ortholog2880.D8LGP5
Preferred nameFDPS
Model size1188
KEGG rclassRC00279,RC00382
KEGG koko:K00787,ko:K05396,ko:K06220
KEGG ReactionR01658,R01874,R02003
KEGG Pathwayko00270,ko00900,ko01100,ko01110,ko01130,ko05164,ko05166,map00270,map00900,map01100,map01110,map01130,map05164,map05166
KEGG ModuleM00366,M00367
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0004161,GO:0004337,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006066,GO:0006629,GO:0006644,GO:0006694,GO:0006695,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009987,GO:0016114,GO:0016125,GO:0016126,GO:0016740,GO:0016765,GO:0019216,GO:0019218,GO:0019222,GO:0019637,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045337,GO:0045338,GO:0045540,GO:0046165,GO:0046890,GO:0050789,GO:0050810,GO:0062012,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090181,GO:0090407,GO:0106118,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
Exons8
EggNOG free text desc.dimethylallyltranstransferase activity
EggNOG OGsCOG0142@1,KOG0711@2759
Ec32 ortholog descriptionFarnesyl pyrophosphate synthase
Ec32 orthologEc-10_003020.1
EC2.5.1.1,2.5.1.10,4.4.1.15
Cds size1188
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9796.21447.1prot_Ecto-sp13_S_contig9796.21447.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9796 1018..5730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464243.2952452-CDS-Ecto-sp13_S_contig9796:1017..12421681464243.2952452-CDS-Ecto-sp13_S_contig9796:1017..1242Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9796 1018..1242 +
1681464243.3074725-CDS-Ecto-sp13_S_contig9796:1677..17851681464243.3074725-CDS-Ecto-sp13_S_contig9796:1677..1785Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9796 1678..1785 +
1681464243.3173952-CDS-Ecto-sp13_S_contig9796:2766..29251681464243.3173952-CDS-Ecto-sp13_S_contig9796:2766..2925Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9796 2767..2925 +
1681464243.326792-CDS-Ecto-sp13_S_contig9796:3440..35871681464243.326792-CDS-Ecto-sp13_S_contig9796:3440..3587Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9796 3441..3587 +
1681464243.3387864-CDS-Ecto-sp13_S_contig9796:3955..40721681464243.3387864-CDS-Ecto-sp13_S_contig9796:3955..4072Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9796 3956..4072 +
1681464243.348645-CDS-Ecto-sp13_S_contig9796:4288..43361681464243.348645-CDS-Ecto-sp13_S_contig9796:4288..4336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9796 4289..4336 +
1681464243.3597713-CDS-Ecto-sp13_S_contig9796:4860..49851681464243.3597713-CDS-Ecto-sp13_S_contig9796:4860..4985Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9796 4861..4985 +
1681464243.3779032-CDS-Ecto-sp13_S_contig9796:5471..57301681464243.3779032-CDS-Ecto-sp13_S_contig9796:5471..5730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9796 5472..5730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9796.21447.1

>prot_Ecto-sp13_S_contig9796.21447.1 ID=prot_Ecto-sp13_S_contig9796.21447.1|Name=mRNA_Ecto-sp13_S_contig9796.21447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=396bp
KRPGATDEPFADQASEILDQAWPVILVVGAMMAVQWGVTLYFGAATASGQ
VLPIYLTLAAGGAAYFLYQEENVGKAWECFCEFDELAKYAFAVLAVAFSH
ALARVSPGSSKGSTGASSSSGQGLAVEDSALVIYPRELPDDPKKSFEAMH
KFLVKELVDDVADNYEGIPAQLDWIQENLEYNTKGGKMNRGMGVVDVLRA
FAEADGRELRHEEVCRGSILGWCVEWLQAFFLVADDVMDRSLTRRGQPCW
YKEIAINDSFILEAHVFKMLKRHFAHENYYLQLVELFHDVTYRTEMGQLL
DLTSQPMDAPHAKHDCAPHPPPLCRFTPVRYRMIVRYKTAYYTFYLPCAI
GMIYAGVKDPASYRLARDICCRIGEFFQIQDDYLDCFGDPEVIGKV
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mRNA from alignment at Ecto-sp13_S_contig9796:1018..5730+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9796.21447.1 ID=mRNA_Ecto-sp13_S_contig9796.21447.1|Name=mRNA_Ecto-sp13_S_contig9796.21447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4713bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9796:1018..5730+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAGACCCGGCGCAACGGACGAGCCTTTCGCAGACCAGGCCAGCGAGAT CCTGGACCAGGCGTGGCCGGTGATCCTGGTGGTGGGCGCGATGATGGCCG TGCAGTGGGGCGTGACCCTCTACTTCGGCGCCGCCACGGCCTCCGGCCAG GTGCTGCCGATCTACCTAACGCTTGCGGCGGGGGGCGCCGCGTACTTCCT GTACCAAGAGGAGAACGTCGGAAAGGTGCGGTCCTCGTTGCTGGCGGTGG CGGCGGCGGCGGCGGTGGTGGTGGTGGCGATGGGTTTGGTGGCTGTGTGT TGAGCGCGAATTGGTCGCCTATGGAAGCAAGATTGCCTTCCCGACCAGTT GGACGTGTTGCCAGCTAGACATTCATAGAGGCGCGGGCAAACCGTGGTAT CTGCACGTGCAGTGAAGTGCAACTGCTATCATCATCCCGCACATGTTCAC GAGTTAAACTAGCTTGTAGCTGACTGCACTGGGATAAGTGACTTGTGCAG CCGCAACCGTATTTTGTCTCTGCGGTTTAGCCCGCTGCTGCTACGTTCGC TTGCCTTCAGGGACGTCCACCAATCCTCCCCCTGCTGCCCCCCTTTCCCT CCGCCGTACTTTGCCGCCACTGCTGTGTTGCGAAAACACGACGAAAAAAA AAAAAAGCAGGCTTGGGAGTGCTTCTGCGAGTTCGACGAGCTGGCCAAGT ACGCGTTCGCGGTGTTAGCGGTGGCGTTTTCCCACGCCCTGGCCAGGGTC TCCCCTGGGAGCTCGAAGGTGCGGCACGGGACAAACCGCGTGCCTACTTC CGTAGGTGACACGAGATACCACACCCCCTGGACCTATTTCCGGAGCCCGA TGACCCCACGATACATGGAGATCATCCATCAATGGAACGATGCGCTTTAC GGGAAGCTCTCGTCGAGACGGCTCCAACGCCGCCATTTTCGACACCATCG CTCTTTTTCTGTTGTGGAGAAATCGAGCTTTGAAAGTCGGTCCAACGGGG GTGTAGTGTCTTGTGTCACCTGCACTGTATTCATCTGTCTTCTGTTGTCT TTCGCCGATCATTCTGTTGGCTGCTCTTTGCTGCTGCTCGCCCATCACGC CCCGCCTTGGATCCTGCTCGTGTTTTCCGCGTTGCCTCGATAGCTGACTC GGTATGCTTTTGCTGGGACCCGACAACCGTCGTGTAATGGCAGGTTAGAG CGCTGTTGTGTCTCCGCCGTGCTCCCCTCTGCCGACTCACTTTGTCTGCG TATCGGTCGTGCCGCTCGCTCCGCTCCGCGCCGATCGGTTGCTTCCCTGC GGCCGTGATTACGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCT CTTTTTTGTCTTCTTCTTATTTCCTGTTTTTTTTTTTTTTTTTCTCTCCC TTCTCTTTCACTTTGTCTGCGTATCGGTCGTGCCGCTCGCTCCGCTCCGC CCCGATCGGTTGCTTCCCTGCGGCCGTGATTACCCCCCCCCCCCCCCCCC CTACCCCGTTCTTGGTTGATGTGTTTGACGTGATGGATATTCGTTGGTGT TGCTTATGGTGCTACGCACCTTCCGTGCCCACCGACGACGATTCACTGCT CGGTCGCTTTGTTGCCTGCCGCCTTCTTGCTGTCTCTCTCTCTCTTCTCT TTCTCTTTTTCTCTCGCTGCCTGTTTATCTCTTCTCCCTCCTCCCGCACC TCTTTCTTGTGCCTGTATCTCTTATATCTCTCTCTTTCTTGTTTGACAGG GATCGACCGGTGCTTCATCGTCGTCGGGGCAAGGTCTCGCCGTGGAGGAC TCGGCCTTGGTCATCTACCCCCGCGAGCTGCCGGACGACCCCAAGAAATC GTTCGAGGCCATGCACAAGTTCCTCGTGAAGGAGCTGGTGGATGACGTCG CTGACAACGTAAGAAGGGAATGGGACAAGCGGAGAGAGAGGGTAGAGAGA GGAAGAGAGAGAGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGCGGGGGCGACATTGTTTGATCCTTTTTGTGTGGCGTTGGACA CGGCTGGGTTGTCATAACACGTGTGCTCCTTCTCCCAGCTCGATTGGTTA GAACTTGTCCTCGCAGTATGTAGTAGGATTCTCGTGAAGCCGGCAGCCGG CGGAGCTGTTATTTTCGTGGGGGGTTGTCGAACGTGCCGCATGAGTGCAG TTTACCCCCTCCGGTCGTCTTTTGGGCATTTCTTGTTGAAAGCCTGGTGT CCCCATTCCACCAACTGCGCGTGGTTTCTTCCTAGACCTTGCATTATACG ACCCGGCGCTGAAAAGCCAACACCCCGCCGCGAATCTATCGTGTAATTCT TGTCTCATCGGAACGTTCGGAACGTTGTCTTTTTTCTTCTTTTCCGAACG CCAAAAAAATGCTATGGTACCAGTACGAGGGAATCCCGGCGCAGCTGGAT TGGATCCAGGAGAACCTGGAGTATAACACCAAGGGAGGGAAGATGAACCG GGGGATGGGGGTGGTGGACGTGCTCAGAGCGTTCGCTGAGGCCGACGGGA GAGAACTCCGCCATGAAGAGGTATAGGGGGGGGGAGTCGCGGAGGGGGTT ATTTTCCCCGTGGTTTTGTTCGGAGGGACCACCACTCCTGTGCCATATCG TTTTCCTCTTGCCCCCGGTAATGGCCATGTCCACAATCGTGCACCAGTAA GTGCGCTGGCATTTTTTAGGTGTCTAACTTACGGATGGGGGGTTTGGCTG CCACAGCAGCATGCAACAGAGAGAATCGCTGGCACTCAGCGCCCCAAAGA GGTGCGTTGACGATATCCAAGGCAAGTTGTCAATGAGAAAATGAAACCTC ACGTTTCACTCGGGTACACGAAGTGTGTAAACGGTATCTGAGACATGGTG TCGATGAAAAATGACCCCACCTCCCACGGTTGACCCAGGTATGCCGCGGC AGCATTTTGGGATGGTGCGTGGAGTGGCTGCAGGCGTTTTTCCTGGTGGC CGACGATGTCATGGACAGGAGCCTCACCCGCCGCGGGCAACCCTGCTGGT ACAAGGTGGGGAGGCAGAAACAGAGACATCCACATCCTGAGGGTTAGCCA AAGTGTGAACGGAGCGTGTCAGTAATTTTTTTTTTCGGTGGTTTATGTCG GCAGCAGCTACGTGTGTATTCCAACGACTCTTTTTACCGACTCTGGTTGC CCTCCGTTCCTCCCCCCCTCTCCCCTCCCCCTCCCCCCCTCACCCCTCCC CCCCCCCCCCCCCTCCCCCAGGAGATTGCCATCAACGACTCTTTCATTCT CGAGGCCCACGTGTTCAAGGTATGTCAAAGCTACTGCTTTGTTCAGGCGG CTACTGTAGATACGAACCGTGAGAGGTGAGGACGGCTTTGTCGCCCCCAT ACCGCCAAGATACGCCGCCACGCTGAGCGAAGATTGCCCGCTTGTCAACG GTCTTGAAGTTTCGACGTATTCGAGTGGGGGGCGAGTACAACTGGCTTTG ATTTTCCGTTCTCTCTTTCCGAAAATATTCGTGTCTGAGTTCCACGGGGC GATGTGCCCTGTCAGGGCGGGGGCGAGGGTACGTGCCCCCCTCGGTTGCA TTCGGCGGCACCCCCAGTGGAGTTTGGAGACGTCCGTCGCCGTGCGAACG AGAGATGTGGGTGTAATCGTGTCGCTCTGCTCTAGTGTTTTTTTTTTCGC GCACGTTTATTTTTTGTTGTTCTGAGTGCCGACGCGTTGTGAACCGCGCA ACATTCCGTCACCCCGCACGTGTCTTCATACACTTTTGCCACATTGCCCG CCTTTGTGTGTGTTTGTTTTTGCTATTTCTTCGTGTCCCACAGATGTTGA AGCGGCACTTCGCTCACGAGAACTACTACCTCCAGCTGGTGGAGCTGTTC CACGACGTGACCTACCGGACCGAGATGGGGCAGCTTCTGGACCTCACGTC CCAGCCGATGGACGCCCCGTCCGATCTCACCAGGCAAGAGACAGAGAGAG AAAGAGACAGAAAGGGAGAGAGAGAGAGACAGACATACATACATACAGGT AGGCAGACAGAGACAGTGACGGAGACACAGAGAGAAAGGGATAGAGACAG ACAGGGACAGGGGACACAAGAGAGACAGACAGAGACCGACAGACAAAACG AGAGTCATACAAATGGGATTCAGTAGAAAATGGACACAGGGTGCTGTGGC GCGGGGTAGGGCGAGATATTATCCATCTCGATGGCATGAGGATCCTTGGG GAGTTAAATATTGGCGATCCCGTAGATACTGTAGACTATCCCACATTTTT GCTGGATATTCCAGACTAGACCTTGCGGTATTCTTGGGTGTACCGGCAGT GGTTGCCCTGGAGATGTCTTTCACGATCCCACGAAACGCAGAATGCCCCC CCCCCCCCCCCCCCGCCCTCTCGAAGACGCGTGGTCAGTAGTCCAACAGC TCAGGCATGCGAAACATGATTGCGCCCCCCACCCCCCCCCCCTCTGCAGG TTTACTCCCGTGCGCTACCGCATGATCGTCCGGTATAAGACTGCGTACTA CACCTTCTACTTGCCGTGCGCGATCGGCATGATCTACGCCGGCGTGAAGG ACCCCGCCAGCTACCGGCTCGCCCGCGACATCTGCTGCCGGATAGGAGAG TTCTTCCAGATCCAGGACGACTACCTCGACTGCTTCGGCGACCCCGAGGT CATCGGAAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9796:1018..5730+

>mRNA_Ecto-sp13_S_contig9796.21447.1 ID=mRNA_Ecto-sp13_S_contig9796.21447.1|Name=mRNA_Ecto-sp13_S_contig9796.21447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1188bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9796:1018..5730+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAGACCCGGCGCAACGGACGAGCCTTTCGCAGACCAGGCCAGCGAGAT
CCTGGACCAGGCGTGGCCGGTGATCCTGGTGGTGGGCGCGATGATGGCCG
TGCAGTGGGGCGTGACCCTCTACTTCGGCGCCGCCACGGCCTCCGGCCAG
GTGCTGCCGATCTACCTAACGCTTGCGGCGGGGGGCGCCGCGTACTTCCT
GTACCAAGAGGAGAACGTCGGAAAGGCTTGGGAGTGCTTCTGCGAGTTCG
ACGAGCTGGCCAAGTACGCGTTCGCGGTGTTAGCGGTGGCGTTTTCCCAC
GCCCTGGCCAGGGTCTCCCCTGGGAGCTCGAAGGGATCGACCGGTGCTTC
ATCGTCGTCGGGGCAAGGTCTCGCCGTGGAGGACTCGGCCTTGGTCATCT
ACCCCCGCGAGCTGCCGGACGACCCCAAGAAATCGTTCGAGGCCATGCAC
AAGTTCCTCGTGAAGGAGCTGGTGGATGACGTCGCTGACAACTACGAGGG
AATCCCGGCGCAGCTGGATTGGATCCAGGAGAACCTGGAGTATAACACCA
AGGGAGGGAAGATGAACCGGGGGATGGGGGTGGTGGACGTGCTCAGAGCG
TTCGCTGAGGCCGACGGGAGAGAACTCCGCCATGAAGAGGTATGCCGCGG
CAGCATTTTGGGATGGTGCGTGGAGTGGCTGCAGGCGTTTTTCCTGGTGG
CCGACGATGTCATGGACAGGAGCCTCACCCGCCGCGGGCAACCCTGCTGG
TACAAGGAGATTGCCATCAACGACTCTTTCATTCTCGAGGCCCACGTGTT
CAAGATGTTGAAGCGGCACTTCGCTCACGAGAACTACTACCTCCAGCTGG
TGGAGCTGTTCCACGACGTGACCTACCGGACCGAGATGGGGCAGCTTCTG
GACCTCACGTCCCAGCCGATGGACGCCCCGCATGCGAAACATGATTGCGC
CCCCCACCCCCCCCCCCTCTGCAGGTTTACTCCCGTGCGCTACCGCATGA
TCGTCCGGTATAAGACTGCGTACTACACCTTCTACTTGCCGTGCGCGATC
GGCATGATCTACGCCGGCGTGAAGGACCCCGCCAGCTACCGGCTCGCCCG
CGACATCTGCTGCCGGATAGGAGAGTTCTTCCAGATCCAGGACGACTACC
TCGACTGCTTCGGCGACCCCGAGGTCATCGGAAAGGTG
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