prot_Ecto-sp13_S_contig9795.21446.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9795.21446.1
Unique Nameprot_Ecto-sp13_S_contig9795.21446.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length95
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9795.21446.1 vs. uniprot
Match: D7FGT3_ECTSI (ABC1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGT3_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 7.270e-46
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 0 
Query:    1 MGRTLSGTAAVAVAVAAWANHVPSADAFSPAMIASTASAFGGPSSAVI-SRRQARSRRPSPSMKVAGAQPQQQDAWLAGGVKTRELFNALSQGEIG 95
            MGRTLSGTAAVAVAVAAWANHVP ADAFSPAMIASTASAFGGPSSAVI SRRQARSRRPSPSMKVAGAQPQQQDAW+AGGVKTRELFNALSQGEIG
Sbjct:    1 MGRTLSGTAAVAVAVAAWANHVPGADAFSPAMIASTASAFGGPSSAVICSRRQARSRRPSPSMKVAGAQPQQQDAWMAGGVKTRELFNALSQGEIG 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9795.21446.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGT3_ECTSI7.270e-4696.88ABC1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..48
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 49..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9795contigEcto-sp13_S_contig9795:2750..3034 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9795.21446.1mRNA_Ecto-sp13_S_contig9795.21446.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9795 2559..3034 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9795.21446.1 ID=prot_Ecto-sp13_S_contig9795.21446.1|Name=mRNA_Ecto-sp13_S_contig9795.21446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
MGRTLSGTAAVAVAVAAWANHVPSADAFSPAMIASTASAFGGPSSAVISR
RQARSRRPSPSMKVAGAQPQQQDAWLAGGVKTRELFNALSQGEIG
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