mRNA_Ecto-sp13_S_contig9794.21445.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9794.21445.1
Unique NamemRNA_Ecto-sp13_S_contig9794.21445.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9794.21445.1 vs. uniprot
Match: D7FWS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS5_ECTSI)

HSP 1 Score: 697 bits (1800), Expect = 1.910e-241
Identity = 383/452 (84.73%), Postives = 393/452 (86.95%), Query Frame = 3 
Query:  525 MFTVRVSKTPTDRIKIGFFCLEKESSLTIGGDDDSWVPGDSMAEALARYTFAIPGGTRRTPIRASGTKAFFLERNDGRTCRYVKLTAPPASSSGL-AAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPDEKTAAA------KAATVAKLSSMSQSWAGERGGRRGSVSGCSISRMTDGSESVCTSTPATDADGSERGSCDEAGXXXXXXXXXXXXXXXXXXXXXDGDGDVQSVLDDDCLVSIARR--NSLHHADTATAGGGAGDSDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRLQISCWRKGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSAVAPACAAAAGASDSPSTCV-----GSGGSVASSCDIVLSQR*CGSGGA 1838
            +FT+RVSKTPTDRI IGFFCLEKESSLTIGGDDDSWVPGDSMAEALARYTFA+PG T+RTP+RASGTKAFFLERNDGRTCRYVKLTAPPASS G+ AAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPDE+TAAA      KAATVAKLSS+SQSWAG RGG RGSVSGCS SRMTDGSESVCTSTPATDADGSE GSCDEAG    XXXXXXXXXXXXX    DGDGDV+SVLDD CL SIARR  NSLHHADT TAG GAG  DASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRR QISCWR GRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSA AP                      SGGSVASS D V SQ+ CGSGGA
Sbjct:   86 IFTIRVSKTPTDRINIGFFCLEKESSLTIGGDDDSWVPGDSMAEALARYTFAVPGSTKRTPMRASGTKAFFLERNDGRTCRYVKLTAPPASSPGVVAAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPDEETAAAXXXXXXKAATVAKLSSLSQSWAGGRGGPRGSVSGCSTSRMTDGSESVCTSTPATDADGSEAGSCDEAGGSSEXXXXXXXXXXXXXSSDGDGDGDVESVLDDVCLASIARRKGNSLHHADTGTAGSGAGAGDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRQQISCWRNGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSAAAPXXXXXXXXXXXXXXXXXXXXXASGGSVASSFDFVFSQQQCGSGGA 537
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9794.21445.1 vs. uniprot
Match: A0A6H5JVR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR9_9PHAE)

HSP 1 Score: 685 bits (1767), Expect = 6.430e-235
Identity = 369/404 (91.34%), Postives = 379/404 (93.81%), Query Frame = 3 
Query:  525 MFTVRVSKTPTDRIKIGFFCLEKESSLTIGGDDDSWVPGDSMAEALARYTFAIPGGTRRTPIRASGTKAFFLERNDGRTCRYVKLTAPPASSSGLAAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPDEKTAAA--KAATVAKLSSMSQSWAGERGGRRGSVSGCSISRMTDGSESVCTSTPATDADGSERGSCDEAGXXXXXXXXXXXXXXXXXXXXXDGDGDVQSVLDDDCLVSIARR--NSLHHADTATAGGGAGDSDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRLQISCWRKGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSAVAPAC 1724
            +FT+RVSKTPT RIKIGFFCLEKES+LTIGGD+DSWVPGDSMAEALARYTFAIPG TRRTPIRASGTKAFFLERNDGRTCRYVKLTAPPASS G AAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSP+E+TAAA  KAATV KLSS+SQSWAG RGGRRGSVSG S SR+TDGSESVCTSTPATDADGSE  SCDEAG XXXXXXXXXXXXXXXXXX  DG GD++SVLDD CL SIARR  NSLHHADTATAG GAG  DASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRR QISCWRKGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSA APAC
Sbjct:  200 IFTIRVSKTPTGRIKIGFFCLEKESALTIGGDNDSWVPGDSMAEALARYTFAIPGSTRRTPIRASGTKAFFLERNDGRTCRYVKLTAPPASSPGGAAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPNEETAAAAVKAATVVKLSSLSQSWAGGRGGRRGSVSGSSTSRVTDGSESVCTSTPATDADGSEADSCDEAGGXXXXXXXXXXXXXXXXXXSSDGHGDIESVLDDGCLASIARRKGNSLHHADTATAGSGAGAGDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRQQISCWRKGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSAAAPAC 603
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9794.21445.1 vs. uniprot
Match: A0A061QLQ6_9CHLO (Uncharacterized protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QLQ6_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 1.300e-15
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 3 
Query: 1320 QLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRLQISCWRKGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDF 1664
            +L G K+TGD NVPA K SFV  L T+ D  E + +D RP++ F  TG  + NL +R  +++    G+GQINR P  W+PEWVDV  + Y +G R  FS+++    +  R ++DF
Sbjct:   85 RLVGLKLTGDPNVPATKLSFVAAL-TEPDDPEGVLADLRPIIAFPSTGPAVVNLQDR--EVAGLFLGKGQINRDPDVWAPEWVDVRLITY-SGQRKGFSILWHDMGEFWRHIIDF 195
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9794.21445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FWS5_ECTSI1.910e-24184.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVR9_9PHAE6.430e-23591.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A061QLQ6_9CHLO1.300e-1542.61Uncharacterized protein n=2 Tax=Tetraselmis sp. GS... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9794contigEcto-sp13_S_contig9794:894..3698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2805
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-16_004220.1
Cds size1296
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464243.1925805-UTR-Ecto-sp13_S_contig9794:893..14171681464243.1925805-UTR-Ecto-sp13_S_contig9794:893..1417Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9794 894..1417 +
1681464243.2147264-UTR-Ecto-sp13_S_contig9794:2713..36981681464243.2147264-UTR-Ecto-sp13_S_contig9794:2713..3698Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9794 2714..3698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464243.2047303-CDS-Ecto-sp13_S_contig9794:1417..27131681464243.2047303-CDS-Ecto-sp13_S_contig9794:1417..2713Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9794 1418..2713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9794.21445.1prot_Ecto-sp13_S_contig9794.21445.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9794 1418..2713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9794.21445.1

>prot_Ecto-sp13_S_contig9794.21445.1 ID=prot_Ecto-sp13_S_contig9794.21445.1|Name=mRNA_Ecto-sp13_S_contig9794.21445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=432bp
MFTVRVSKTPTDRIKIGFFCLEKESSLTIGGDDDSWVPGDSMAEALARYT
FAIPGGTRRTPIRASGTKAFFLERNDGRTCRYVKLTAPPASSSGLAAAGA
VKNLCGLWCAPYGSHGLEIIQLSTDPSCSPDEKTAAAKAATVAKLSSMSQ
SWAGERGGRRGSVSGCSISRMTDGSESVCTSTPATDADGSERGSCDEAGG
SSEAAGGGGGGGGGVDDDSSDGDGDVQSVLDDDCLVSIARRNSLHHADTA
TAGGGAGDSDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELR
SDSRPVVTFLPTGAVMANLANRRLQISCWRKGRGQINRVPGRWSPEWVDV
EFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSAVAPAC
AAAAGASDSPSTCVGSGGSVASSCDIVLSQR*
back to top

mRNA from alignment at Ecto-sp13_S_contig9794:894..3698+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9794.21445.1 ID=mRNA_Ecto-sp13_S_contig9794.21445.1|Name=mRNA_Ecto-sp13_S_contig9794.21445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2805bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9794:894..3698+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCAGTTTCTTGGATCCTCTTGCCCCTGAAACGATTTATGAAGACATGC
ATTGTTGTGTGGGGTATGTATCGAGTTGAACATCTTTATTCGCGATATCG
TCTTTATTCTGTTTCAGATGCGAAATCCAGCACTAGTCAGGCCGAGCATT
TGTAAGACGAACGACACGACACGTGATACCGCGTAGTCAGTCGTCTCATA
TTTGTAAAGATTCGGGCGCACCACGGCCGATGTGGACGCAAAAACATGCT
CCGTTTTGCCGTCTAGCGAACACGACTGCTCGGCGAACTGGCCGACTTAC
GAAACATTCACGGCTTGCTGCCCACGACACGGACCTGGCAGAAAACCTTG
TCGGCTTGCATGAAGGTCAAAGCTCAAAAAAGGCTGGATACCCAAGTAGA
GAGCTACCAATGTCCATGTACATGCATCGCTCACCCACTGCCATGTGCGC
ATACGGCGTGCTACACAAGACAGATGAAATCACCTTGACACTGTGGTCGT
ACCCCCCTCCTCCCCCTCGGCAGCATGTTCACCGTCCGAGTTTCCAAGAC
CCCGACCGACCGCATCAAGATCGGCTTCTTCTGCTTGGAGAAGGAGTCCT
CCCTCACCATCGGCGGAGACGACGACAGCTGGGTGCCCGGAGACTCCATG
GCGGAGGCGCTGGCGCGTTACACCTTTGCCATACCGGGAGGCACGAGGCG
GACCCCGATCCGCGCCTCGGGCACGAAGGCGTTCTTCCTCGAGCGCAACG
ACGGCCGCACCTGTCGCTACGTAAAGCTCACGGCCCCGCCGGCGTCCTCC
TCGGGGTTGGCTGCCGCCGGGGCGGTCAAGAACCTGTGCGGGCTGTGGTG
CGCGCCGTACGGCAGCCACGGGCTGGAGATCATTCAGCTCTCGACGGACC
CGTCTTGCTCCCCGGACGAGAAGACGGCGGCCGCAAAGGCAGCGACGGTC
GCGAAGCTGTCTTCCATGTCGCAGTCCTGGGCGGGCGAGAGAGGTGGGCG
TCGAGGCTCCGTCTCCGGCTGCAGCATCAGCAGGATGACGGACGGCAGCG
AGAGCGTGTGCACGTCCACGCCCGCCACGGACGCGGACGGCAGCGAGCGG
GGCTCCTGCGACGAGGCTGGGGGTTCATCAGAGGCGGCCGGCGGCGGCGG
CGGCGGGGGCGGTGGCGTCGATGATGACAGCAGCGACGGGGACGGCGACG
TCCAAAGCGTCCTCGACGACGACTGCTTGGTCTCGATCGCGAGGCGCAAC
AGCCTCCATCATGCTGACACCGCTACCGCCGGCGGCGGTGCCGGCGACAG
CGATGCTAGCGTTCCCTCCCAGCTGTTCGGCTTCAAGGTGACCGGAGACG
ACAACGTCCCCGCCGGCAAGACCTCCTTCGTGATCGACCTCTCGACGGAC
TTCGACGTCGACGAGGAGCTCCGGTCCGACTCGAGACCCGTCGTGACCTT
CCTCCCCACAGGGGCCGTCATGGCCAACCTGGCCAACAGGCGCCTGCAGA
TCTCGTGCTGGCGCAAAGGCCGCGGCCAGATCAACCGAGTGCCCGGGCGG
TGGTCGCCAGAGTGGGTGGACGTGGAGTTCGTCGAGTACAGAGCCGGGTC
CCGGTGCGCATTCTCCGTCATCTTTCGGCAGCCCAACCAGGCGGTGAGGG
TGGTGATGGACTTCGAGAGGGCGCTCGGCTGCGAGGAGGAGTGGCCCCAG
TGGTCGGCCGTCGCTCCTGCTTGCGCTGCTGCTGCTGGTGCCTCGGACTC
GCCGTCGACGTGTGTTGGCTCCGGGGGTAGCGTAGCATCCAGTTGCGATA
TTGTCTTGTCGCAGCGGTAGTGCGGCAGCGGCGGTGCATGATGCCGTAGG
GGGCACTCTGCGACACCGCTTGGTTTTTGTAACCGGGGGCAGTCTTCATC
AGAGTGCCTCTCATCTCGCTGAACAATTTTTGAGTTTCTGGAGATGTTGT
GCAATCTTATGAGCCTCCTGTGAACTTCTCGGGCTGCAGGGCTTTTGTCG
CTACAAAAAACCCTGAGCTTGGGGTGGAGTTGCTGTAGATGGGTATCGTC
CATCAGCGAAGCATCTGCCGCACCCTGCAAGAGCTCTCGGTTGTTTGAAC
GTCAAACCCTCAAGTAACGTTTGTTTTGAAACAGCCTGGTTCCGCGCGGT
AGACTAGTCTGGATTTAGTTCGCAATGGTACCTTATGTTTTTGAAATGTA
TGCATTTGTTCCGTGTGAATCGCGTGTTTTTTGGTGGTACGCACCGCGCT
CTCTGTAAGAATCCCTCGTCTTTGCCAATGCGGGAGGTTTGTTGCTGTGT
ATCACAATTTGTAGCTAACTGCGTTCTAGCGTTTTGTGAGATATGTTGTC
GTTGCTGTGTGTCGAAGCTTTTATGAGTCGGGTGGCGTTTCTCTACCGAA
TTCATTCGTTTATTCGAAGCTTTGTTTCCGAAGAACGAAAGCCGGTTGTG
CTGTTGTACTAGGCGGTCTAATGGCTGTAAAGCGTTCTGTGTGGGTTGGG
ATTTCGAATCCCGGGGAAAGGCTTCTCTGCATGCAGTATGCAACGTGGAG
CTTGTAGTCTTGGTAGGCGATATAGAGTACACACGAAGGAAAGATGTGCT
CACCCCCTCTCGGGTTAAGATATCGATTGTATAGTGTACGTGCAGGTGGG
ACCTCGGCTTTGGGACTCCTTGTCCGTAAGAGAGGCACAATCGACTCGGA
GAGATGGGTGATACATGCATACTCAACATTTGCCGTACAACCGAAAAAAA
AAATCTCTTGGCCCAAAAAAATCCAGCAACGAAAGTATGGGTTCACGAGG
TGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9794:894..3698+

>mRNA_Ecto-sp13_S_contig9794.21445.1 ID=mRNA_Ecto-sp13_S_contig9794.21445.1|Name=mRNA_Ecto-sp13_S_contig9794.21445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1296bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9794:894..3698+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCACCGTCCGAGTTTCCAAGACCCCGACCGACCGCATCAAGATCGG
CTTCTTCTGCTTGGAGAAGGAGTCCTCCCTCACCATCGGCGGAGACGACG
ACAGCTGGGTGCCCGGAGACTCCATGGCGGAGGCGCTGGCGCGTTACACC
TTTGCCATACCGGGAGGCACGAGGCGGACCCCGATCCGCGCCTCGGGCAC
GAAGGCGTTCTTCCTCGAGCGCAACGACGGCCGCACCTGTCGCTACGTAA
AGCTCACGGCCCCGCCGGCGTCCTCCTCGGGGTTGGCTGCCGCCGGGGCG
GTCAAGAACCTGTGCGGGCTGTGGTGCGCGCCGTACGGCAGCCACGGGCT
GGAGATCATTCAGCTCTCGACGGACCCGTCTTGCTCCCCGGACGAGAAGA
CGGCGGCCGCAAAGGCAGCGACGGTCGCGAAGCTGTCTTCCATGTCGCAG
TCCTGGGCGGGCGAGAGAGGTGGGCGTCGAGGCTCCGTCTCCGGCTGCAG
CATCAGCAGGATGACGGACGGCAGCGAGAGCGTGTGCACGTCCACGCCCG
CCACGGACGCGGACGGCAGCGAGCGGGGCTCCTGCGACGAGGCTGGGGGT
TCATCAGAGGCGGCCGGCGGCGGCGGCGGCGGGGGCGGTGGCGTCGATGA
TGACAGCAGCGACGGGGACGGCGACGTCCAAAGCGTCCTCGACGACGACT
GCTTGGTCTCGATCGCGAGGCGCAACAGCCTCCATCATGCTGACACCGCT
ACCGCCGGCGGCGGTGCCGGCGACAGCGATGCTAGCGTTCCCTCCCAGCT
GTTCGGCTTCAAGGTGACCGGAGACGACAACGTCCCCGCCGGCAAGACCT
CCTTCGTGATCGACCTCTCGACGGACTTCGACGTCGACGAGGAGCTCCGG
TCCGACTCGAGACCCGTCGTGACCTTCCTCCCCACAGGGGCCGTCATGGC
CAACCTGGCCAACAGGCGCCTGCAGATCTCGTGCTGGCGCAAAGGCCGCG
GCCAGATCAACCGAGTGCCCGGGCGGTGGTCGCCAGAGTGGGTGGACGTG
GAGTTCGTCGAGTACAGAGCCGGGTCCCGGTGCGCATTCTCCGTCATCTT
TCGGCAGCCCAACCAGGCGGTGAGGGTGGTGATGGACTTCGAGAGGGCGC
TCGGCTGCGAGGAGGAGTGGCCCCAGTGGTCGGCCGTCGCTCCTGCTTGC
GCTGCTGCTGCTGGTGCCTCGGACTCGCCGTCGACGTGTGTTGGCTCCGG
GGGTAGCGTAGCATCCAGTTGCGATATTGTCTTGTCGCAGCGGTAG
back to top