mRNA_Ecto-sp13_S_contig9787.21438.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9787.21438.1
Unique NamemRNA_Ecto-sp13_S_contig9787.21438.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: D8LL80_ECTSI (Calcium ion binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL80_ECTSI)

HSP 1 Score: 566 bits (1458), Expect = 2.390e-201
Identity = 309/329 (93.92%), Postives = 311/329 (94.53%), Query Frame = 1
Query:   37 MGRLNSPSAVAIASDEITEMQSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKPANAEAEAAARAAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDTADELAMEAEAAAAAELKREGGQARRKSSVSVARKTSVMAKEITRRISSALLPQIDSAADPGGSNSDDXXXXXXXXXXXAAGGSA 1023
            MGRLNSPSAVAIASDEITEMQSKLMVAL SKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVF ERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLME PA AEAEAAARAAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDTADELAMEAEAAAAAE KREGGQ+RRKSSVSVARKTSVMAKEITRRISSALLPQIDSAADPGGSN+DD           A G SA
Sbjct:    1 MGRLNSPSAVAIASDEITEMQSKLMVALQSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFQERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMENPATAEAEAAARAAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDTADELAMEAEAAAAAESKREGGQSRRKSSVSVARKTSVMAKEITRRISSALLPQIDSAADPGGSNNDDANDPAASSPKNATGASA 329          
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: A0A7S3XZL5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZL5_HETAK)

HSP 1 Score: 162 bits (409), Expect = 2.350e-42
Identity = 110/284 (38.73%), Postives = 147/284 (51.76%), Query Frame = 1
Query:   37 MGRLNSPSAVAIASDEITEMQSKLMVAL---LSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLM---EKPANAEAEAAAR---------------------AAG----------RRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDTAD 777
            MG L S      A      M SK+  AL   L + EE + + +  ++FTR+LLK   +R  +  ++RVF E D D+ G I   E+  A+  L+V L+ +EI+ LF ++D      L +K+FLV L +GYVL+ IPDL+   E+ AN   E +                       +AG          RR SNFY  EQ +   + L    YLLFD + +G I R  V   V E G K+  +    S+ERW EMDWD NG ISF EFVYAFT+WVDVD ED AD
Sbjct:    1 MGALASIMKPKHAGSSNKAMNSKIKTALKAKLKETEELKKQGRDPINFTRILLKFQIIRKVIKRVQRVFTEYDKDKDGHITFEELQDALVKLQVKLTREEIRDLFNLSDLMGYHTLNLKEFLVALTVGYVLEVIPDLLAEAEERANNMNEMSVMIRNAPEEYELEEERSMTMVPSSAGNTVRRRPKRRRRSSNFYGLEQELCYVMHLIVGCYLLFDTKGRGYIRRRDVGAAVRERGGKEGSASGFFSEERWGEMDWDHNGSISFEEFVYAFTRWVDVDDEDEAD 284          
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: D8SHN1_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SHN1_SELML)

HSP 1 Score: 110 bits (276), Expect = 5.200e-25
Identity = 69/240 (28.75%), Postives = 132/240 (55.00%), Query Frame = 1
Query:   79 DEITEMQSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKPANAEAEAAARAAGRRMSNFYNK------EQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDTADE 780
            +++++++ +++ A+  + +   + FK   SF  +L+K   +      +R VF + D D SG ID+ E+ T  ++L+V  ++ E+KA  + +D  + K +  K+F++VLA+ Y+L    +   KP   + E   +  G ++ N  ++      E T    ++ F +    FDK+  G +SR++++  + E       S   +  +R++EMDWD NG I+F EF++AFT WV ++ E+ ADE
Sbjct:   12 NDVSKIERRMVEAMRKRAKAGPSPFK---SFNSILMKFPKIDKSFEQVRGVFKKFDKDDSGTIDLEELKTCFRELQVEFTDTEVKAFHEESDMDKSKGVDFKEFIIVLALVYLLG---ETGAKPVKQKEEDKGK--GSQLKNLKSRIGLAELESTFETIVDTFRF----FDKDGDGYVSRKEMITAINEASPGQSSSGESIGVKRFEEMDWDKNGMITFKEFLFAFTDWVGIEEEEDADE 239          
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: A0A813C2D6_9DINO (Calmodulin n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C2D6_9DINO)

HSP 1 Score: 110 bits (274), Expect = 3.900e-24
Identity = 80/280 (28.57%), Postives = 138/280 (49.29%), Query Frame = 1
Query:   88 TEMQSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKP-ANAEAEAAARAAGRRMSNF----------------YNKEQTVRNA------------------------LELFTYAYLLFDKECKGVISREQVM----IVVAENGQKDEG-------SMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDT 771
            T +  K+   + +K+ E      +  SF R+LLK   +R  M  I+RVF E D D+SG I+  E++ AM     + +  +++ +F  ADFY+++QLT ++F+V LA+GY+L  IP L   P A ++A AA + A  + +                    + QT+  +                          L   A+  FD +  G+I +E++      + A++G K          ++S L++ER++E+DWD +G ++F EF++AF  WV +D ED+
Sbjct:   25 TSLDLKIAELIKAKEAEAEASSTKVHSFNRILLKFPFIRKTMRSIKRVFDEFDADKSGTIEYDELANAMAKFGTSAASVDVEEVFANADFYDNEQLTFREFVVSLALGYLLGQIPILDAMPVARSDAGAAVKEANAKQAAMDAGEDVEVDTEQPAARSRRSQTISRSKVQKMSSMSEGQLLGSEGAAIAYSFTLVLEAFFYFDPKHTGMIKKEELASSMAALSAQSGAKGVSPHGHSGEALSFLTEERYNELDWDHDGSVTFKEFLFAFMAWVGLDDEDS 304          
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: A0A482T3U5_9ARCH (EF-hand domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3U5_9ARCH)

HSP 1 Score: 107 bits (268), Expect = 5.200e-24
Identity = 75/200 (37.50%), Postives = 110/200 (55.00%), Query Frame = 1
Query:   97 QSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKPANAEAEAAARAAG---RRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEM 687
            ++K+  ALL KK E+    KQ +SF ++LLK   +R  +  ++ +FHE   D  G++D   +   M+ L VN++ ++I  LF   D  E   +TMK+FLV L +G VLDAIP L   P +A   A A A     R  S        ++  L L   AYL+FD E KG I R  V  ++ E+G K  G  ++LSQ+RW++M
Sbjct:   26 ETKINQALLKKKMEHIISDKQ-ISFEKILLKFDKLRVVLGYVKTIFHEVAED--GKLDHNGLQVTMQRLCVNMTLEDILDLFDFIDVQETNVITMKEFLVALTIGMVLDAIPALAT-PHDASGTAGAPAKPSLKRSFSGLLGHNSEIKEMLNLIVSAYLIFDPEGKGYIERSSVEKLLDEHGAKQGGGNAMLSQQRWNDM 221          
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: K3WUQ5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUQ5_GLOUD)

HSP 1 Score: 105 bits (261), Expect = 1.060e-22
Identity = 81/258 (31.40%), Postives = 132/258 (51.16%), Query Frame = 1
Query:   85 ITEMQSKLMVAL--LSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDL-MEKPANAEAEAAAR---AAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQ------------------KDEGSMSI---LSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDTAD 777
            +T +  K+  AL  L KK    +K      FTR+LLK   V    N +R  F E D  + G I   ++ +A + L V+ S++EI  +F+ +D  ED +L  K+FLV LA+G+VL  IP L  E+ +   A  A +   A     +  + +   +R A +L   A+L FD +  G+I+++++ + +  + Q                  K+ G MSI   + + R++EMDW+++G I F EF+ AF  WV +D +D  D
Sbjct:    1 MTPLDLKITNALKELQKKRVQDSKDHHHNPFTRILLKFPIVAKAFNSVRSAFEEFDKGKKGYIVYADLESAFEKLGVSFSKEEIGQVFEESDMLEDGRLNFKEFLVCLAIGFVLHKIPSLERERLSIFYAPLATKDKEAGPPNQALLFGEGNKLRIAFQLAVDAFLWFDVDGNGLINKDEMAMRLGTSTQLHSPTKKTSTLKERAGFHKESGEMSINAEIWERRFNEMDWNNDGTIQFKEFLMAFESWVGLDDDDLVD 258          
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: A0A5P1EQW8_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EQW8_ASPOF)

HSP 1 Score: 103 bits (258), Expect = 1.440e-22
Identity = 74/253 (29.25%), Postives = 129/253 (50.99%), Query Frame = 1
Query:   25 FGGCMGRLNSPSAVAIASDEITEMQSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKPANAEAEAAARAAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVD-GEDTADE 780
             GG +GR +S       S  +++++ K MV  + K+    T  K   SF  +++K   +   +   + +F E D D +G ID  EM    + L+++ SE+EI  LF++ D  ED  +   +F+V+L + Y       L+++PA++         G+    F + + T     E    A++  DK   G +S+ +++  + E     E S   ++  R++EMDWD NG ++F EF++AFT+WV +D  ED  DE
Sbjct:    1 MGGILGRSDSNKQ----SSPVSKLELK-MVEAMKKRSLKGTSMK---SFNSIIMKFPKIDESLRKCKTIFEEFDEDSNGTIDRVEMKHCFQKLEIDFSEEEINDLFEVCDINEDMGMKFNEFIVLLCLVY-------LLKEPADSTVVQ-----GKYQLGFPDLQAT----FETLVNAFVFLDKNSDGYVSKSEMVQAINETT-SGERSSGPIAMRRFEEMDWDKNGMVTFKEFLFAFTRWVGIDENEDDEDE 228          
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: A0A0B0MQV4_GOSAR (Putative calcium-binding CML21-like protein n=12 Tax=Gossypium TaxID=3633 RepID=A0A0B0MQV4_GOSAR)

HSP 1 Score: 103 bits (256), Expect = 2.020e-22
Identity = 69/232 (29.74%), Postives = 122/232 (52.59%), Query Frame = 1
Query:   88 TEMQSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKPANAEAEAAARAAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVD-GEDTADE 780
            T++++K++ A+  +  E  T  K   SF  ++LK   +   + + + VF + D D +G ID  E+      L+++ +E+EI  LFK  DF ++  +   +F+V+L + Y+L               + A    G+      N E T     E F  A++  DK   G +S+ +++  + E+G++  G +++   +R++EMDWD NG +SF EF++AFT WV +D  ED  DE
Sbjct:    4 TKLEAKMVEAMQRRASEG-TAMK---SFNSIILKFPKIDESLRNCKAVFEQFDEDSNGAIDNEELKKCFNKLQISFTEEEISDLFKACDFNQNMGIKFNEFIVLLCLVYLLK--------------DNAPGHEGKSRMGMPNLEAT----FETFVDAFVFLDKNKDGFVSKNEMVQAINESGERSSGRIAM---KRFEEMDWDKNGSVSFKEFLFAFTNWVGIDDAEDDEDE 210          
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: A0A3B6QD76_WHEAT (Uncharacterized protein n=12 Tax=Triticeae TaxID=147389 RepID=A0A3B6QD76_WHEAT)

HSP 1 Score: 103 bits (256), Expect = 2.610e-22
Identity = 71/254 (27.95%), Postives = 131/254 (51.57%), Query Frame = 1
Query:   25 FGGCMGRLNSPSAVAIASDEITEMQSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKPANAEAEAAARAAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAEN--GQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDTADE 780
             GG +G+ ++P   + A    T+++ K MV  + ++ +  T  +   SF  V++K   +   + + R +F + D D +G ID  E+    + L ++ +++EIK LF+  D YE   +   +F+V L + Y+L+        PA +EA        R+     N E T    ++ F +     DK   G +S+ +V+  + E   G++  G + +   +R++EMDWD NG ++F EF++AFT+WV +D  +  D+
Sbjct:    1 MGGVIGKGDTPRYSSAA----TKLEQK-MVDAMQQRAQQGTSLR---SFNSVIMKFPKIDESLRNCRIIFQQFDEDSNGEIDQLELKHCFQKLDISFTDEEIKDLFEACDIYEHMGMKFNEFIVFLCLVYLLN-------DPAVSEA--------RKRMGLGNLEPTFETLVDAFVF----LDKNKDGYVSKNEVIEAINETSAGERSSGRIGV---KRFEEMDWDKNGTVTFKEFLFAFTRWVGIDDNEDDDD 224          
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: A0A1U8J3L0_GOSHI (probable calcium-binding protein CML21 n=15 Tax=Gossypium TaxID=3633 RepID=A0A1U8J3L0_GOSHI)

HSP 1 Score: 102 bits (253), Expect = 6.110e-22
Identity = 70/245 (28.57%), Postives = 126/245 (51.43%), Query Frame = 1
Query:   25 FGGCMGRLNSPSAVAIASDEITEMQSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKPANAEAEAAARAAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVD 759
             GG +G+  SP          T++++K++ A+    ++  +K     SF  ++LK   +   +   + +F + D D +G ID  E+   +  L+V  +E+EI+ LFK  D  ED  +   +F+V+L + Y+L        K    E EA +R          N E T    ++    A++L DK   G +S+ +++  + E+G++  G    ++ +R++EMDWD NG +SF EF++AFT WV ++
Sbjct:    1 MGGVVGKSESPE---------TKLEAKMVEAM----QQRASKGTTIKSFNSIILKFPKIDHTLRKCKAIFEQFDEDSNGAIDHEELKKCLHKLQVCFTEEEIEDLFKACDMNEDMGIKFNEFIVLLCLVYLL--------KDNATEFEAKSR------MGVPNLEATFETLVD----AFVLLDKNKDGYVSKTEMVQAINESGERSSGP---IATKRFEEMDWDKNGSVSFKEFLFAFTTWVGIE 211          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL80_ECTSI2.390e-20193.92Calcium ion binding n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S3XZL5_HETAK2.350e-4238.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8SHN1_SELML5.200e-2528.75Uncharacterized protein n=4 Tax=Selaginella moelle... [more]
A0A813C2D6_9DINO3.900e-2428.57Calmodulin n=1 Tax=Symbiodinium sp. KB8 TaxID=2309... [more]
A0A482T3U5_9ARCH5.200e-2437.50EF-hand domain-containing protein n=1 Tax=archaeon... [more]
K3WUQ5_GLOUD1.060e-2231.40Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5P1EQW8_ASPOF1.440e-2229.25Uncharacterized protein n=1 Tax=Asparagus officina... [more]
A0A0B0MQV4_GOSAR2.020e-2229.74Putative calcium-binding CML21-like protein n=12 T... [more]
A0A3B6QD76_WHEAT2.610e-2227.95Uncharacterized protein n=12 Tax=Triticeae TaxID=1... [more]
A0A1U8J3L0_GOSHI6.110e-2228.57probable calcium-binding protein CML21 n=15 Tax=Go... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9787contigEcto-sp13_S_contig9787:2015..6159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score573.2
Seed ortholog evalue8.3e-161
Seed eggNOG ortholog2880.D8LL80
Model size1023
KEGG rclassRC00917
KEGG koko:K00507,ko:K02183,ko:K13448
KEGG ReactionR02222
KEGG Pathwayko01040,ko01212,ko03320,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04152,ko04212,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map01040,map01212,map03320,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04152,map04212,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872
Exons10
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-24_002620.1
EC1.14.19.1
Cds size1023
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko01009,ko03036,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9787.21438.1prot_Ecto-sp13_S_contig9787.21438.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9787 2015..6159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464242.4180284-CDS-Ecto-sp13_S_contig9787:2014..21191681464242.4180284-CDS-Ecto-sp13_S_contig9787:2014..2119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9787 2015..2119 +
1681464242.4340022-CDS-Ecto-sp13_S_contig9787:2360..24311681464242.4340022-CDS-Ecto-sp13_S_contig9787:2360..2431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9787 2361..2431 +
1681464242.4459183-CDS-Ecto-sp13_S_contig9787:2837..28691681464242.4459183-CDS-Ecto-sp13_S_contig9787:2837..2869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9787 2838..2869 +
1681464242.4591513-CDS-Ecto-sp13_S_contig9787:3259..33961681464242.4591513-CDS-Ecto-sp13_S_contig9787:3259..3396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9787 3260..3396 +
1681464242.4710286-CDS-Ecto-sp13_S_contig9787:3852..39511681464242.4710286-CDS-Ecto-sp13_S_contig9787:3852..3951Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9787 3853..3951 +
1681464242.4859438-CDS-Ecto-sp13_S_contig9787:4397..45041681464242.4859438-CDS-Ecto-sp13_S_contig9787:4397..4504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9787 4398..4504 +
1681464242.4996438-CDS-Ecto-sp13_S_contig9787:4782..49001681464242.4996438-CDS-Ecto-sp13_S_contig9787:4782..4900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9787 4783..4900 +
1681464242.5129027-CDS-Ecto-sp13_S_contig9787:5412..55261681464242.5129027-CDS-Ecto-sp13_S_contig9787:5412..5526Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9787 5413..5526 +
1681464242.5288548-CDS-Ecto-sp13_S_contig9787:5710..58181681464242.5288548-CDS-Ecto-sp13_S_contig9787:5710..5818Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9787 5711..5818 +
1681464242.5405312-CDS-Ecto-sp13_S_contig9787:6027..61591681464242.5405312-CDS-Ecto-sp13_S_contig9787:6027..6159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9787 6028..6159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9787.21438.1

>prot_Ecto-sp13_S_contig9787.21438.1 ID=prot_Ecto-sp13_S_contig9787.21438.1|Name=mRNA_Ecto-sp13_S_contig9787.21438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=341bp
MTLGSALPFGGCMGRLNSPSAVAIASDEITEMQSKLMVALLSKKEEYRTK
FKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKD
LKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKP
ANAEAEAAARAAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISR
EQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWV
DVDGEDTADELAMEAEAAAAAELKREGGQARRKSSVSVARKTSVMAKEIT
RRISSALLPQIDSAADPGGSNSDDACDPAGSSPKDAAGGSA
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mRNA from alignment at Ecto-sp13_S_contig9787:2015..6159+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9787.21438.1 ID=mRNA_Ecto-sp13_S_contig9787.21438.1|Name=mRNA_Ecto-sp13_S_contig9787.21438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4145bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9787:2015..6159+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCCTCGGCAGTGCCCTCCCGTTCGGCGGGTGCATGGGGCGACTCAA CTCCCCCTCGGCGGTGGCCATCGCGAGCGATGAGATCACCGAGATGCAGT CTAAGGTACACCACGTTTGTGTGTAGAGAAATGCCGGTATGACAAAGCCT CTTTCATGCTCACACTTCGATTTTATGCCGTTATTAGAACGCCGTGGAGG CGTTCTCAATGTTTCTTACTACAACGCCAATATAGTCAATTTCCGGGTCG TCTTTCGTTCTAGTTGGGCTGCTTCTTCTTTCTTAACAGTGCTTGCCGGT ACGTGCCTGCTTCATTCCTTGATCGCCGGTGAACACCAACAAACAGCTGA TGGTGGCGCTCTTGTCCAAAAAGGAGGAGTATCGCACCAAGTTCAAGCAG GAGATGAGCTTCACGAGGTGAGGTCGGTACAAGGGGGGCAACATGCAGCC TGCGTACTTCGTGACGGTTGGGGCGATCAAAAGGGTAGCTTCGGAGAAAT TGTTTTTCCGTCACAGACTACGATAGGTGCAGCGAGCTTTCGGACACGCA CCAACACTCAAGAGCTTGGGAGAGTGAAAAACATTATGGGCACACGAACT TGAGATATATCCCACACATTGCAGAGGCGTGTGCCCGCCTCACTAAAATC CCCCCAAAGTGCTCTTCGGTCGGCCACGGTCCTCCGTGAGCGTAGGGCGC ACTATTGTAGTCACATACGGCAAATATAGATATGATGCTAGCGATGTTGG TGGTGTGAGGTGAAAAAACAAGACGCATCCCTCCTCTCCTCGTGCCCGCT TTTTCTTCCCACCTTTCCCACAGGGTACTTCTCAAGCTCGGCACGGTTCG GACATGTGAGCGACATGGTCGACGAAGGTTGGATAGGAATAGGGCGCTGT GAAGCCCAGCTTCCTTTGTCGAGGGGCACCCAAGATTTACTCTGCATTGC GGGAGAAATGAGGAATACGTGTTTTCTGCGTGCTTTGCATTTGCATGGAC TTTACCGAGGGGACAGATCTTTTCAATGATGTGGGGCAGAGTGCTGCTGC TACTACTACTGCCGCTCCAAGTTCACAATACGTGCTCTCTTTCTTTGTTC TTCCCACACCCCGGCGAAGCGAGGGTTCGGTCGTCGTCGGCAAATCATGA AATATAAGCCTGTCTATCTGTCTGTCTGTCTCTCTCTTTCTCTCTCTTTC TCTCTCTCTCTCTCTATTCCCCGCCCTGCTAAACAATGCCAAAAGTCATG AACGACATCCGGCGGGTGTTTCACGAGCGAGACACAGACCAGAGTGGGCG CATCGACATGTGCGAAATGTCCACCGCGATGAAGGATCTCAAGGTCAACC TGTCAGAGGACGAGATCAAAGCCTTGTTCAAGGTGAGGTAGAGAAACGAG CGCGATGATAACAACGGCCACACCTCTTCAAGACATGTGCAGCAGCTGGA GCATGAGCATGTGACGGAGAAAATTTCTCTGTCACAATACGTCTCAGCCG GGATCTGCTTGCAGGACACACTTGTAGAATGAGAATTGCAGAAACGAAGA ACAAGAAGCGAAGGGATGAAAAGTTCACCGACGAACCTCTGAGGTAAACA AAGCCCTATAGTGGAAACGGATTATACCAGTCATGGCGGAAGTGACCAAG TCGTTTTATGCTACGTCATTGCATCCTGCCATCGCTCGGGTGTTGCGGAG ACGCGGTAAAAACTTGAAAAATGTAGACCTATAAATAAGGCGTCGTCCCC AAAGCGGGACAAAAACTCTTACTTGATGAAAACGTGTCCTGTTTTCTTAT TTTCGTGTGCGTGACGGGGGATTATTGCCGCCGGAAAGATGGCCGACTTT TACGAGGACAAGCAGCTGACGATGAAGCAGTTTCTCGTGGTTCTCGCCAT GGGCTACGTGCTGGACGCCATCCCCGACCTGATGGAGGTGCGTGCCCAGA GCCAAAGAGTGCTTTGCAACGATTATTGTTGTAGGCAGTACGCGTGTAGC GGTGCATGGATGGCTGCTCAGTATCATGCGTGACCGAACCCTGGGACAAG AATTGACCTTCAAGACTCCATGATCCTTCATGGGGTGCGTGGGGCTTAAT CGCGAACGCCTGGGTTTTTCCGAACGCTTCGGTCTCGCGCTCCAACTCTC GCGTGCCGGAGATACGTCTACCCTTGCGAATCGTACCACACTTACCCAGC GACATTATTTACGTGTAGGTGGTACTCTTCCCAGCCCGTGTGCATCGAAA GCCCGCAGTTAACGCCGAGGCGAGGGCACCTGTTGATGTGCCCTAGCCCC CGCGAACACTCGTCATCTCACCCTCTAACCCCCTTACCCCCATCCCCAAC CGCACGACTACAACAACCCTCTTAATGGTGAAGAAACCGGCGAATGCCGA GGCGGAGGCGGCTGCTCGCGCGGCGGGGCGGCGGATGAGCAATTTCTACA ACAAGGAGCAGACCGTGCGGAACGCGCTTGAGCTGTTCACGTAAGCGACG TCACGAGTAGTAACTGATTTTTCGACACCAACCAGAGCTACGGTAGGCTC AAGACACACATCTCGAGAGACGACGGCGACGATTGGAAGAATAACATGAA CTAGATATCCCCCGTTACAGCAGGAGCGAATGGTGTGGAGTACCCCGGCT CTCACAAGTCACAGTAGCCGAGTCACAATGGAGTCCCATGGGGTTGTGTC ATTTTCTAAAAGTACTGACGTTCAGCTATTCGTCTCCTCTGAGACTGTGT TCTGGCTGCAAATCGAAGGTACGCCTACTTGTTGTTCGACAAGGAGTGCA AGGGGGTAATCAGCCGGGAGCAAGTGATGATCGTCGTGGCGGAAAACGGG CAGAAGGACGAAGGCAGCATGAGCATTCTCTCGCAGGTACCGTTGTTGTT GCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTGTTGCTGTAGC ATTCTTCTCATGATGGCAATGAATTGATCTTCGACAGCTTTTCCAGAAGT GCGCCAGAATACTCGAATTGGGCATGAACATACGCAATGTGCGTGCTGCA GTAGCCGCCATATTTGCTCGGTAGTAAAAGGAAGCGCTGAATGACATCCG TTACAATCGCCAACATTGCTGCTGCCGACGTTATTGCTCCCCATGGAGAG TGTATGGCTCCGAATATAGCATACCTGGTACAGTAAACCCCTCTTCAGGG CTCACAAACGTCTAGTTATTTCGCTCATGTTGTGGCTGTTCCTGTGCAGT CCACAGCCTCAGTCGACAGGGCGAGAAGAAGGGAGGTGGCGGAGGGGGGA GAGAGGGGGAGAACACTACTCAACAATCATAAACAAAAGTGCGAAGCGAA CATGGTCAACAAACGGCGATGAGCATCAGTGTCGTTTCGTAACCGCAGGA ACGATGGGATGAGATGGACTGGGATAGCAACGGCGACATCAGCTTCGGAG AGTTCGTGTACGCCTTCACCAAGTGGGTCGACGTCGACGGGGAAGACACG GCCGACGAGTTGGTGAGCCGAGATCGGTAGTATGAACGAGGGAGCATTGC TTGGATGATGGGGATTGGTTAGAGAGGCGTGTACGCTCCTAACGACTACA ACAACACTCAGAAGTGCTGAAGCTGGATATAGCGAGAATCATGGTGGTGC TCGAAATTCTCCTCTACAATTCTTGCCTCTCCGCTGTTCTCTTTAGGCCA TGGAGGCGGAGGCCGCCGCGGCGGCGGAGTTGAAGCGGGAAGGGGGACAG GCCAGACGAAAATCTTCCGTCAGCGTTGCAAGAAAAACCTCCGTCATGGC AAAGGTACAGACCGGCTTCGTAGCAGCTGTTGCAGTGGTTGCCGTAGTTG TTGTAGTTGGACTGGCTGCCGTGGCACGACTGCTGCGGTTGTTGCAGCTG TTGCACCTGTGTAGTTATTGATATCGTGGTCAAAACACGTTCGTCACGAG GCTGAATACGTGTCACTCAACGTTGAAACCTCTACCCGCCCCCCTTCCTC TCATCGTTGCCAGGAGATTACCCGTCGAATTTCTTCGGCGTTGCTCCCCC AGATCGACTCGGCAGCCGACCCCGGCGGCAGCAACAGCGACGATGCCTGC GACCCAGCGGGTTCCTCCCCGAAAGACGCCGCTGGCGGTTCTGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9787:2015..6159+

>mRNA_Ecto-sp13_S_contig9787.21438.1 ID=mRNA_Ecto-sp13_S_contig9787.21438.1|Name=mRNA_Ecto-sp13_S_contig9787.21438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9787:2015..6159+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCCTCGGCAGTGCCCTCCCGTTCGGCGGGTGCATGGGGCGACTCAA
CTCCCCCTCGGCGGTGGCCATCGCGAGCGATGAGATCACCGAGATGCAGT
CTAAGCTGATGGTGGCGCTCTTGTCCAAAAAGGAGGAGTATCGCACCAAG
TTCAAGCAGGAGATGAGCTTCACGAGGGTACTTCTCAAGCTCGGCACGGT
TCGGACATTCATGAACGACATCCGGCGGGTGTTTCACGAGCGAGACACAG
ACCAGAGTGGGCGCATCGACATGTGCGAAATGTCCACCGCGATGAAGGAT
CTCAAGGTCAACCTGTCAGAGGACGAGATCAAAGCCTTGTTCAAGATGGC
CGACTTTTACGAGGACAAGCAGCTGACGATGAAGCAGTTTCTCGTGGTTC
TCGCCATGGGCTACGTGCTGGACGCCATCCCCGACCTGATGGAGAAACCG
GCGAATGCCGAGGCGGAGGCGGCTGCTCGCGCGGCGGGGCGGCGGATGAG
CAATTTCTACAACAAGGAGCAGACCGTGCGGAACGCGCTTGAGCTGTTCA
CGTACGCCTACTTGTTGTTCGACAAGGAGTGCAAGGGGGTAATCAGCCGG
GAGCAAGTGATGATCGTCGTGGCGGAAAACGGGCAGAAGGACGAAGGCAG
CATGAGCATTCTCTCGCAGGAACGATGGGATGAGATGGACTGGGATAGCA
ACGGCGACATCAGCTTCGGAGAGTTCGTGTACGCCTTCACCAAGTGGGTC
GACGTCGACGGGGAAGACACGGCCGACGAGTTGGCCATGGAGGCGGAGGC
CGCCGCGGCGGCGGAGTTGAAGCGGGAAGGGGGACAGGCCAGACGAAAAT
CTTCCGTCAGCGTTGCAAGAAAAACCTCCGTCATGGCAAAGGAGATTACC
CGTCGAATTTCTTCGGCGTTGCTCCCCCAGATCGACTCGGCAGCCGACCC
CGGCGGCAGCAACAGCGACGATGCCTGCGACCCAGCGGGTTCCTCCCCGA
AAGACGCCGCTGGCGGTTCTGCC
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