mRNA_Ecto-sp13_S_contig97867.21437.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig97867.21437.1
Unique NamemRNA_Ecto-sp13_S_contig97867.21437.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: D7FV96_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV96_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 3.870e-31
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 1
Query:   67 HLSALAGNVGAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLGSKDEPARKVQASSDAEGR 270
            HLSALAGN+GAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLGS+DE ARKVQASSDAEGR
Sbjct:   97 HLSALAGNLGAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLGSQDESARKVQASSDAEGR 164          
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: A0A6H5L134_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L134_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.530e-30
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 1
Query:   67 HLSALAGNVGAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLGSKDEPARKVQASSDAEGR 270
            HLSALAGN+GAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLG +DE ARKVQASS AEGR
Sbjct:   97 HLSALAGNLGAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLGGQDESARKVQASSHAEGR 164          
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: A0A7S4A3V7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3V7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.360e-8
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   10 LLSSGAVEDARDAMGQTALHLSALAGNVGAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLGSKDEPARKVQASS 255
            LL +GA  DARDA G+T L ++  AG +   + LLA GA+++ DDAGNSPLH+A A    D ++  +    D   R   A++
Sbjct:  153 LLDAGATVDARDAAGRTPLAVAVQAGRLSLVRVLLARGASLVADDAGNSPLHLAVAA--PDCLEALLRADGDRSGRPRDANT 232          
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: A0A8J2SKQ2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKQ2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.360e-8
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   10 LLSSGAVEDARDAMGQTALHLSALAGNVGAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLGSKDEPARKVQASS 255
            LL +GA  DARDA G+T L ++  AG +   + LLA GA+++ DDAGNSPLH+A A    D ++  +    D   R   A++
Sbjct:  101 LLDAGATVDARDAAGRTPLAVAVQAGRLSLVRVLLARGASLVADDAGNSPLHLAVAA--PDCLEALLRADGDRSGRPRDANT 180          
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: A0A0L0DMF4_THETB (Ankyrin n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DMF4_THETB)

HSP 1 Score: 54.3 bits (129), Expect = 1.730e-6
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   37 ARDAMGQTALHLSALAGNVGAAQALLAAGATMMTDD-AGNSPLHVAAAQGHSDIIQLFV 210
            ARDA+ +TALH +AL+G+    +ALLAAGA   T D   ++PLH+AA QGH D+I L +
Sbjct:  589 ARDALERTALHAAALSGSTACVKALLAAGAAPDTCDWRHDTPLHLAAGQGHEDVIALLL 647          
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: UPI001EEC4F37 (ankyrin-1-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEC4F37)

HSP 1 Score: 53.1 bits (126), Expect = 4.290e-6
Identity = 41/91 (45.05%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    4 ELLLSSGAVE-DARDAMGQTALHLSALAGNVGAAQALLAAGAT-MMTDDAGNSPLHVAAAQGHSDIIQLFVLGSKDEPARKVQASSDAEGR 270
            +LLL+   V+ D  D  GQTALHL+A   NV AAQ LL   A+  + D  G SPLHVAA QG ++II L +   K      V     A GR
Sbjct:  373 DLLLAHPKVKVDDVDVYGQTALHLTARLSNVKAAQKLLEKEASPSILDKDGGSPLHVAALQGETEIIDLILQAQKHN---HVDEDKTANGR 460          
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: UPI001CE21038 (cyclin-dependent kinase 4 inhibitor C isoform X1 n=2 Tax=Siniperca chuatsi TaxID=119488 RepID=UPI001CE21038)

HSP 1 Score: 48.5 bits (114), Expect = 8.550e-5
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 IELLLSSGAVEDARD-AMGQTALHLSALAGNVGAAQALLAAGA-TMMTDDAGNSPLHVAAAQGHSDIIQLFV 210
            +E LL++GA  + RD  +  T  H +A  G + + +AL+  GA T + D+ GN PLH+AA +GH +++QL +
Sbjct:   54 VEALLAAGANPNVRDPVLSLTVTHDAARQGFIDSVRALVDGGADTNLVDEKGNLPLHLAAMEGHLEVVQLLI 125          
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: A0A835W370_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835W370_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 9.560e-5
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 IELLLSSGAVEDARDAMGQTALHLSALAG-NVGAAQALLAAGATMMTDDA-GNSPLHVAAAQGHSDIIQLFV 210
            I  LL+ GAV DARD  G TAL L++ AG +V    ALLAAGA     +A G SP+++AA +GH   +Q  +
Sbjct:  461 IRQLLAGGAVVDARDTGGATALFLASEAGKSVDVCAALLAAGADPTISNAQGESPMYIAALRGHLGCVQALL 532          
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: A0A0N5BA11_STREA (ANK_REP_REGION domain-containing protein n=1 Tax=Strongyloides papillosus TaxID=174720 RepID=A0A0N5BA11_STREA)

HSP 1 Score: 49.3 bits (116), Expect = 9.660e-5
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1
Query:   58 TALHLSALAGNVGAAQALLAAGATMMTDD-AGNSPLHVAAAQGHSDIIQLF 207
            TALHL+A  GNV   + LL  G T+  +D AG +PLH+AA  G +D++QLF
Sbjct:  491 TALHLAAFTGNVSICKRLLQQGWTVTAEDKAGATPLHIAAGNGFTDVVQLF 541          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FV96_ECTSI3.870e-3195.59Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
A0A6H5L134_9PHAE2.530e-3092.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4A3V7_9STRA3.360e-841.46Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A8J2SKQ2_9STRA5.360e-841.46Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A0L0DMF4_THETB1.730e-652.54Ankyrin n=1 Tax=Thecamonas trahens ATCC 50062 TaxI... [more]
UPI001EEC4F374.290e-645.05ankyrin-1-like n=1 Tax=Daphnia pulicaria TaxID=355... [more]
UPI001CE210388.550e-538.89cyclin-dependent kinase 4 inhibitor C isoform X1 n... [more]
A0A835W370_9CHLO9.560e-547.22Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A0N5BA11_STREA9.660e-550.98ANK_REP_REGION domain-containing protein n=1 Tax=S... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig97867contigEcto-sp13_S_contig97867:38..307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score123.6
Seed ortholog evalue4.6e-26
Seed eggNOG ortholog2880.D7FV96
Model size270
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Cds size270
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464242.3841052-CDS-Ecto-sp13_S_contig97867:37..3071681464242.3841052-CDS-Ecto-sp13_S_contig97867:37..307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig97867 38..307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig97867.21437.1prot_Ecto-sp13_S_contig97867.21437.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig97867 38..307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig97867.21437.1

>prot_Ecto-sp13_S_contig97867.21437.1 ID=prot_Ecto-sp13_S_contig97867.21437.1|Name=mRNA_Ecto-sp13_S_contig97867.21437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
IELLLSSGAVEDARDAMGQTALHLSALAGNVGAAQALLAAGATMMTDDAG
NSPLHVAAAQGHSDIIQLFVLGSKDEPARKVQASSDAEGR
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mRNA from alignment at Ecto-sp13_S_contig97867:38..307+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig97867.21437.1 ID=mRNA_Ecto-sp13_S_contig97867.21437.1|Name=mRNA_Ecto-sp13_S_contig97867.21437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97867:38..307+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGAGCTGCTCTTATCCTCTGGAGCTGTGGAAGACGCTCGTGACGCCAT GGGTCAGACCGCGTTGCATCTCTCCGCGCTTGCTGGTAATGTGGGTGCAG CGCAAGCCTTGCTTGCGGCGGGTGCCACGATGATGACCGATGACGCTGGA AATTCGCCGCTTCACGTGGCCGCTGCGCAAGGTCATTCCGATATTATCCA GTTGTTCGTTCTCGGGAGTAAGGACGAACCGGCTCGGAAGGTGCAGGCCT CATCAGATGCAGAAGGCAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig97867:38..307+

>mRNA_Ecto-sp13_S_contig97867.21437.1 ID=mRNA_Ecto-sp13_S_contig97867.21437.1|Name=mRNA_Ecto-sp13_S_contig97867.21437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97867:38..307+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGAGCTGCTCTTATCCTCTGGAGCTGTGGAAGACGCTCGTGACGCCAT
GGGTCAGACCGCGTTGCATCTCTCCGCGCTTGCTGGTAATGTGGGTGCAG
CGCAAGCCTTGCTTGCGGCGGGTGCCACGATGATGACCGATGACGCTGGA
AATTCGCCGCTTCACGTGGCCGCTGCGCAAGGTCATTCCGATATTATCCA
GTTGTTCGTTCTCGGGAGTAAGGACGAACCGGCTCGGAAGGTGCAGGCCT
CATCAGATGCAGAAGGCAGA
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