mRNA_Ecto-sp13_S_contig978.21429.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig978.21429.1
Unique NamemRNA_Ecto-sp13_S_contig978.21429.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig978.21429.1 vs. uniprot
Match: D7FS07_ECTSI (Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS07_ECTSI)

HSP 1 Score: 513 bits (1321), Expect = 2.170e-176
Identity = 344/406 (84.73%), Postives = 357/406 (87.93%), Query Frame = 3 
Query:   66 MNLVFGSLCPLHEGNDRCPCRTLTTNASIWTAAELGDAARVRVSVAVKGRRPDSLDPHGYSPLHLAAQNGRLSVVLYLLEAGASPDGVPAEAGGCGAXXXXXXXXXXXXXXXXXXXXXXXXTNAADTSFGDMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGNSALDVLGLSAPILPDAVPGPSPHSEGSSGAAXXXXSEACSIVVLSSGAGKDWGGVREALERHGGRRRMHARVEGVGNAGGSGXXXHQGGAGSECIDHGARSSAREKESASVISAEPVVQAAGGELGVREPEGAALPGQDRSCTKKRSGVDAAAELVSTPSRGQLGAVSMAGIEGVVLERAVEKTPRSGGXXXXGVPCGECLLPKVVMVRTTCCRGLICKPCAREIXXXXXXXXXXRCRGD 1283
            MNLVFGS CPLHEGNDRCPCRTLTTNASIWTAAELGD ARVRVSV VKGRRPDSLDPHGY PLHLAAQNGRLSVVLYLLEAGASPDGVPA+AGGCGA XXXXXXXXXXXXXXXXXXXXXXXTNAADTSF DMR XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGNSALDVL LS PILP+A+P  SPHSEGSSGA XXXX   CSIVVLSSGAG +WGGVREALERHGG RRM ARVEG+GNAG  G   HQG AGS CID GARSS  EKESASV+SAEPVVQ AG ELGVREPE AALPGQ+ SC+KKRSGVDAA EL STPS+GQLGAVS+AG E VVLERAV K+PRSGGXXXXGVPCGECLLPKVVMVRTTCC GLICKPCAR++          R RGD
Sbjct:    1 MNLVFGSFCPLHEGNDRCPCRTLTTNASIWTAAELGDVARVRVSVGVKGRRPDSLDPHGYCPLHLAAQNGRLSVVLYLLEAGASPDGVPADAGGCGATXXXXXXXXXXXXXXXXXXXXXXXTNAADTSFADMRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGNSALDVLCLSVPILPEAMPARSPHSEGSSGAXXXXXXXXCSIVVLSSGAGNNWGGVREALERHGGLRRMRARVEGLGNAGSGGGGDHQGEAGSGCIDPGARSSECEKESASVLSAEPVVQTAGAELGVREPEVAALPGQETSCSKKRSGVDAA-ELASTPSQGQLGAVSVAGTERVVLERAVGKSPRSGGXXXXGVPCGECLLPKVVMVRTTCCGGLICKPCARDVCARRQSCRRCRYRGD 405
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig978.21429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS07_ECTSI2.170e-17684.73Chain A, Crystal Structure Of A Designed Full Cons... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig978contigEcto-sp13_S_contig978:8381..12448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score517.7
Seed ortholog evalue4.9e-144
Seed eggNOG ortholog2880.D7FS07
Model size1712
KEGG koko:K15503
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-12_006950.1
Cds size1221
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig978.21429.1prot_Ecto-sp13_S_contig978.21429.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig978 8807..12383 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464241.7156212-UTR-Ecto-sp13_S_contig978:8380..88061681464241.7156212-UTR-Ecto-sp13_S_contig978:8380..8806Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig978 8381..8806 -
1681464241.7689295-UTR-Ecto-sp13_S_contig978:12383..124481681464241.7689295-UTR-Ecto-sp13_S_contig978:12383..12448Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig978 12384..12448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464241.7265275-CDS-Ecto-sp13_S_contig978:8806..97221681464241.7265275-CDS-Ecto-sp13_S_contig978:8806..9722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig978 8807..9722 -
1681464241.7360091-CDS-Ecto-sp13_S_contig978:10495..105951681464241.7360091-CDS-Ecto-sp13_S_contig978:10495..10595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig978 10496..10595 -
1681464241.746552-CDS-Ecto-sp13_S_contig978:11413..115561681464241.746552-CDS-Ecto-sp13_S_contig978:11413..11556Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig978 11414..11556 -
1681464241.7576797-CDS-Ecto-sp13_S_contig978:12321..123831681464241.7576797-CDS-Ecto-sp13_S_contig978:12321..12383Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig978 12322..12383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig978.21429.1

>prot_Ecto-sp13_S_contig978.21429.1 ID=prot_Ecto-sp13_S_contig978.21429.1|Name=mRNA_Ecto-sp13_S_contig978.21429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=407bp
MNLVFGSLCPLHEGNDRCPCRTLTTNASIWTAAELGDAARVRVSVAVKGR
RPDSLDPHGYSPLHLAAQNGRLSVVLYLLEAGASPDGVPAEAGGCGATPL
HRAAFAGQLPCVRTLLAAGASTNAADTSFGDMRTPLHKAASQGHREVCVA
LMEAGADPNACDAAGNSALDVLGLSAPILPDAVPGPSPHSEGSSGAAGGG
GSEACSIVVLSSGAGKDWGGVREALERHGGRRRMHARVEGVGNAGGSGGG
GHQGGAGSECIDHGARSSAREKESASVISAEPVVQAAGGELGVREPEGAA
LPGQDRSCTKKRSGVDAAAELVSTPSRGQLGAVSMAGIEGVVLERAVEKT
PRSGGGGGGGVPCGECLLPKVVMVRTTCCRGLICKPCAREICARRQSCRR
CRCRGD*
back to top

mRNA from alignment at Ecto-sp13_S_contig978:8381..12448-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig978.21429.1 ID=mRNA_Ecto-sp13_S_contig978.21429.1|Name=mRNA_Ecto-sp13_S_contig978.21429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4068bp|location=Sequence derived from alignment at Ecto-sp13_S_contig978:8381..12448- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTGGTGCTGGTGCAATCCCTGCCTCGTTGTCTCTGCTGAAGCAGTGAC
TGCCGTACTGAACAAATGAACCTCGTGTTCGGGTCGCTCTGCCCGTTACA
CGAAGGAAACGACCGGTGTCCGTGCAGGTGAGCATTGCTCGAACCGCTGC
CATCGAAGGTTGAGATTCAACTGCGGCGTAATTCTCACTTTGAACTTGTA
GTCATTCATTCCTTTCGGCGGCTGTTGTTGCACCCGTGCGGGGACGGACA
CGGGGACGGACACGGGGACGGCAGTGCAATGAGAAGTTGAGAGGGGCGGT
AAGGAAGCATCTGTAGTACTGTGACATTGGACCTGTGCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCCATGCCTGAGGTTCTCGCTGTACAGATACA
CCTGCACATGACGTAAATTACCACCCTCCCCCCTGCTGGTCTTGAAGGTT
CACTCCAACTGTTGTTGCTCGACAACGAAGACGAAACCGTGTGTCAGTTC
CTAAACTAAACGCCCCGAAAAGATCTGAGTATTTTCATATTTTCCAGCTG
GTATTTTCTGTCTCTACACCCTTTTTTGAGTGTGACGCTCGGGAAATCGT
CGTAAGGAGCTGTTCACATGCCGTAGGGTGCTGCTCTGGTGTTCGTGTCT
TCATTCATCCCATGGCAAACAGCAGGAAGGAGGTATATGTAAGGAACCCC
GTTTGGCATTGAGTGGGTGGCCACGAATCATTAAGGGTGTGTCTACCACT
GGCGGACAGAGGAGAGGGCAAGCTTTCGCGCCCGATGTTGACGCGCATAC
TCGAACCAGGACCAGCACGCCTCCACGTCGTGATCGTAACGGCCATCCCC
TTTGCACCACGCCCCGATGCACATGTTTTGCGACGTTGACAGGACGTTGA
CCACCAATGCTAGCATCTGGACAGCGGCAGAGCTGGGAGACGCGGCGCGT
GTGAGGGTGTCAGTGGCGGTAAAGGGACGACGGCCTGACTCCCTCGACCC
GCACGGCTACTCTCCTCTTCACCTCGCCGCCCAGAGTGAGTTACAGCAAG
ATAGAGCAACGCGCATTAGAGCAGCAGCGGGCAGCGTTCACGCCCTCACC
GTACCATGCGTTCCAGTACCCAACGCCAAAGAGTTGGTGTTGAGCCCGTT
ACTTGTGTGTACAGTTCCCAAACGACTAGGTGCGTTTAATCGCAGGCCCA
AAGGACAACTTGATGGGTTTAGTCGGGGTGAAGGTTGTCACACCCCGAAG
CCCTCAACGACGTTATGTCCTACCGCCTTCATGACTGGATACCGTCACGG
GTTTTCTACTGCCCTTGCTCTTCCGTCGTCACCACAAAGTTCATTTGGTC
ATGAAGAAGCAAGAAACATCGTGTGACGAAAACAATAACTCAAGACAAGA
TTTGCTGCAACACAAAGGAACACGCGCAGTGTTGACGGCTTTCTGTTGTA
AACGGCTGTTGTTCTTTCTCCGTATCGAGTGGGGGGAAACCAACCTTGTC
GCGAGATCAAAATTCCCCGTGAAAGGAAACACCCTCACCCACCAACTCAA
TCCAAGTCTTCTTTCGCGCTATCATGTAGACCGTTCTGTAGACCTGTGGA
GGAGGTTTCACTCCCAAATACTAGGTTGGGGGTTCGTCCACAATAGGTCT
CACAACACTGCTAGCGGGCTTGCGTGTTGCATCGCATTGTTGCAGACGCA
AGGGGTTGCGTCATCGGCCCGTCGTGTGGCTTCTGTGGGTGCACACGACA
AGCATTCATCGCGCGGAAACCACTTTTTACCCTCTCAAGAAGTAGATGCA
TCGCTCGTTCTCTCGCCTCTTTTCTGTTTCACCTTTCCTGTCGTACCGTT
CAGACGGAAGGCTGTCGGTGGTGCTGTACCTCCTCGAGGCCGGCGCTAGC
CCCGACGGCGTCCCTGCCGAGGCCGGAGGTTGTGGAGCCACGCCACTCCA
CAGGTGAGCCGCGTTGTCAAGAACTCCCCCTCGTTTGTGGTCGGCTTGGG
ACCGTTCCGTCGGATACGGGACTGTGCTTCTGTGCGATATTCCCAACATC
AGAACATGCTGCTTGTATTTATCATGCTGTTGGGGATGACAAGGCCTTGC
CTTGAATTGCTCGTGGCGCGCAACAGGTATCCTCAGAAGCTCCATTTTTG
GCACGCACCGCCAGTATCGCGCTTTAAGCTTCAGCCCAGTATACAGGGTA
GGACCTGATGCTCATCTTTTGTTCTGCACGAACAATCACCTGCTAAGTGC
CGCACAGCAATCAATCCCACGGGTGGTGCCAAGGTGTAGGTGTCCGCTGA
AAAAATAGTGCGGGATAACTGAGAACCGCCATCGCACACGGCCGGAACGT
GAGCCCCTTAGCGCATCCACCCGCTCTTGATATCTTCCAACTCTAAAATG
ACAAACCCCATCGAATGTTTTCCTTGCTGTCGTGCTCCCGAAATGTACCA
CAACAGGTTGGTTTCCGTAATTTCCCGGTGCGCGAGGTACGCGTGTCGTC
ACCCTTGTTTCGCACGTGGAAGATGCTACTCATACCCTAAAAAAAAAATC
TTAACCCCCCCAGAGCGCGAACACGTGTTGCGTGGCCGCGCATCACACTT
TTCGCCCTCGTCGACCAACACCCTTCCTCCTACCCCTGCCCCCCTTTTAC
CCGCCCGCCCCTCCTACTTGTCACCGTCCAAACCCTTGCGATGCGCCCGA
CTGTCACGTATTCGGCTGGCTCGCAGGGCCGCTTTTGCCGGGCAGCTGCC
TTGCGTCCGGACCCTCCTCGCTGCCGGCGCCAGCACGAACGCCGCCGACA
CCTCCTTCGGCGACATGAGAACGCCTCTCCACAAGGCCGCGAGCCAGGGC
CACAGGGAGGTGTGCGTCGCGCTCATGGAAGCCGGAGCAGATCCTAACGC
CTGCGACGCCGCCGGCAACTCCGCGCTGGATGTGCTCGGCCTTTCGGCTC
CGATTCTCCCGGACGCCGTGCCTGGGCCGAGTCCACATAGCGAGGGCAGC
AGCGGCGCAGCAGGTGGCGGCGGCAGCGAAGCATGCAGCATCGTGGTGCT
GTCGAGCGGGGCAGGGAAGGACTGGGGCGGGGTGAGGGAGGCGCTGGAGC
GACACGGGGGTCGTCGCCGCATGCACGCCAGGGTCGAGGGGGTAGGGAAC
GCTGGCGGCAGTGGCGGTGGTGGCCACCAAGGCGGAGCTGGCAGTGAGTG
CATAGATCACGGCGCTAGGAGTAGCGCGCGCGAGAAAGAGAGCGCTTCTG
TTATTTCGGCTGAGCCCGTCGTCCAGGCGGCGGGAGGCGAGTTGGGTGTG
CGGGAGCCCGAGGGAGCGGCGCTGCCAGGACAGGATAGAAGTTGCACGAA
AAAACGAAGCGGTGTCGACGCCGCCGCTGAACTCGTCTCGACGCCATCGC
GAGGACAGCTTGGGGCAGTTTCTATGGCCGGAATCGAAGGCGTTGTTCTA
GAGAGAGCTGTCGAAAAGACCCCCCGGTCTGGTGGCGGCGGCGGCGGCGG
CGTTCCTTGCGGCGAGTGCCTCCTTCCCAAGGTGGTGATGGTTCGCACGA
CTTGTTGTAGGGGCTTGATTTGCAAACCTTGCGCAAGGGAAATCTGCGCT
CGTCGGCAAAGTTGCAGACGGTGTCGTTGCCGTGGGGACTGATTTCTGTC
TTTCTACGATCTTGATTGATTTTGACGTCTTTCTGCAGGCGAGGTGGTTC
AGAATATATTGGATGATGATTGGGTCCGTGTTCAGTGTTCGGGTGTTTGA
GCCTCGTGTTTGGCAGTTTGAGGGTACGGCAGCGACTTGTTTTCAAACTT
CGTCGGCACGACATGTACGCCTTCAGTTAAGCAAGCGTCATATGGCAAGT
TTTTAAGTAGGCCGTATTCGACATGAGGCTAGTGAGCACGGACCAAACTG
ATGAATGAGTGATAGAAGTGCGATGAGCTTTTGCATCCTGTCCACTATGT
AAAAGGCAACAAAAGAATCAGACGCTGACTGATGACACAAAACGTTGCTT
GATGACGAGAAAACCTTGTTTTACGGATTCAACTTTTTCGCGGACTATTT
TGGAGGACTTCAATAAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig978:8381..12448-

>mRNA_Ecto-sp13_S_contig978.21429.1 ID=mRNA_Ecto-sp13_S_contig978.21429.1|Name=mRNA_Ecto-sp13_S_contig978.21429.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1221bp|location=Sequence derived from alignment at Ecto-sp13_S_contig978:8381..12448- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCTCGTGTTCGGGTCGCTCTGCCCGTTACACGAAGGAAACGACCG
GTGTCCGTGCAGGACGTTGACCACCAATGCTAGCATCTGGACAGCGGCAG
AGCTGGGAGACGCGGCGCGTGTGAGGGTGTCAGTGGCGGTAAAGGGACGA
CGGCCTGACTCCCTCGACCCGCACGGCTACTCTCCTCTTCACCTCGCCGC
CCAGAACGGAAGGCTGTCGGTGGTGCTGTACCTCCTCGAGGCCGGCGCTA
GCCCCGACGGCGTCCCTGCCGAGGCCGGAGGTTGTGGAGCCACGCCACTC
CACAGGGCCGCTTTTGCCGGGCAGCTGCCTTGCGTCCGGACCCTCCTCGC
TGCCGGCGCCAGCACGAACGCCGCCGACACCTCCTTCGGCGACATGAGAA
CGCCTCTCCACAAGGCCGCGAGCCAGGGCCACAGGGAGGTGTGCGTCGCG
CTCATGGAAGCCGGAGCAGATCCTAACGCCTGCGACGCCGCCGGCAACTC
CGCGCTGGATGTGCTCGGCCTTTCGGCTCCGATTCTCCCGGACGCCGTGC
CTGGGCCGAGTCCACATAGCGAGGGCAGCAGCGGCGCAGCAGGTGGCGGC
GGCAGCGAAGCATGCAGCATCGTGGTGCTGTCGAGCGGGGCAGGGAAGGA
CTGGGGCGGGGTGAGGGAGGCGCTGGAGCGACACGGGGGTCGTCGCCGCA
TGCACGCCAGGGTCGAGGGGGTAGGGAACGCTGGCGGCAGTGGCGGTGGT
GGCCACCAAGGCGGAGCTGGCAGTGAGTGCATAGATCACGGCGCTAGGAG
TAGCGCGCGCGAGAAAGAGAGCGCTTCTGTTATTTCGGCTGAGCCCGTCG
TCCAGGCGGCGGGAGGCGAGTTGGGTGTGCGGGAGCCCGAGGGAGCGGCG
CTGCCAGGACAGGATAGAAGTTGCACGAAAAAACGAAGCGGTGTCGACGC
CGCCGCTGAACTCGTCTCGACGCCATCGCGAGGACAGCTTGGGGCAGTTT
CTATGGCCGGAATCGAAGGCGTTGTTCTAGAGAGAGCTGTCGAAAAGACC
CCCCGGTCTGGTGGCGGCGGCGGCGGCGGCGTTCCTTGCGGCGAGTGCCT
CCTTCCCAAGGTGGTGATGGTTCGCACGACTTGTTGTAGGGGCTTGATTT
GCAAACCTTGCGCAAGGGAAATCTGCGCTCGTCGGCAAAGTTGCAGACGG
TGTCGTTGCCGTGGGGACTGA
back to top