mRNA_Ecto-sp13_S_contig9779.21427.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9779.21427.1
Unique NamemRNA_Ecto-sp13_S_contig9779.21427.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9779.21427.1 vs. uniprot
Match: D7FJ67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ67_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 5.140e-6
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:  334 FPRRGRVTDGGGSNQRPSAADDSSKSFNAVPKFTTYATKSDSPARSPSSLVILW*AP 504
            F +R   TDGGGSNQRPSAADDSSKSFNAVP       ++ +  R PS   +L  +P
Sbjct:   10 FSQREGATDGGGSNQRPSAADDSSKSFNAVPG----GVQTTNEERRPSPFALLSGSP 62
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9779.21427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ67_ECTSI5.140e-654.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9779contigEcto-sp13_S_contig9779:3656..4746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size509
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_000280.1
Cds size273
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464241.520072-UTR-Ecto-sp13_S_contig9779:3655..37861681464241.520072-UTR-Ecto-sp13_S_contig9779:3655..3786Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9779 3656..3786 -
1681464241.5306754-UTR-Ecto-sp13_S_contig9779:4353..44311681464241.5306754-UTR-Ecto-sp13_S_contig9779:4353..4431Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9779 4354..4431 -
1681464241.5627093-UTR-Ecto-sp13_S_contig9779:4719..47461681464241.5627093-UTR-Ecto-sp13_S_contig9779:4719..4746Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9779 4720..4746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464241.540659-CDS-Ecto-sp13_S_contig9779:4431..45281681464241.540659-CDS-Ecto-sp13_S_contig9779:4431..4528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9779 4432..4528 -
1681464241.5519636-CDS-Ecto-sp13_S_contig9779:4543..47191681464241.5519636-CDS-Ecto-sp13_S_contig9779:4543..4719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9779 4544..4719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9779.21427.1prot_Ecto-sp13_S_contig9779.21427.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9779 4432..4719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9779.21427.1

>prot_Ecto-sp13_S_contig9779.21427.1 ID=prot_Ecto-sp13_S_contig9779.21427.1|Name=mRNA_Ecto-sp13_S_contig9779.21427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
MRSAYDRHLSRAYYLLLLCSCRAIVDLRAALRWSKTTAQDPCSLTSPHLP
TAKKTPILTSSIAQESTVLQPVNGPLSLVKKNLLLPASWG*
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mRNA from alignment at Ecto-sp13_S_contig9779:3656..4746-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9779.21427.1 ID=mRNA_Ecto-sp13_S_contig9779.21427.1|Name=mRNA_Ecto-sp13_S_contig9779.21427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1091bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9779:3656..4746- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCACAACCGCGCCCGCCTCACTGCCATGCGGAGCGCATACGATAGGCA
CCTCTCACGAGCCTACTACTTGTTGTTGTTGTGCTCTTGCCGTGCCATTG
TCGATCTCCGGGCCGCGCTTCGTTGGTCGAAGACAACAGCCCAAGACCCC
TGTTCTCTCACCTCTCCCCACCTACCCACCGCCAAAAAAACTCCAATTTT
GACGTCTCGACCTAGCAGATCGAGCATTGCCCAAGAATCAACCGTACTTC
AACCAGTCAATGGTCCTCTATCTCTAGTGAAAAAGAACCTGCTCCTACCC
GCGTCGTGGGGTTGAAGACGCAGCCCTCGGCAGAACATCTGCTGTGGTTT
TCCCCGAAGGGGACGTGTCACAGACGGCGGCGGGTCAAATCAGGTGAGAG
AAAGGATATGGACATGATGAACATACAACATAGTCTGTCTAGGCGCTTTT
TGCTTCTCCCCGATCCCTCCTCTCAGACCTCTCAGACCTCTCTGGATTCT
CGCCCTCCATTTGCCCCGGCGTTGAGGGCATGGCAGCGAAGATATAGAGA
GGTGCATCACCGCCCTCTGGGCTGTCGACACTTTGTTCTTGTGGGGGAGG
AGCTGCATCAGTAGCAAAGAAGGATCCTGATGGTGTCTTTGCCGTGAATG
TACGTACTGTAGACAGCCTCATCGCGGTGGTGAACAGTGGCAGTGTCGTG
AGTTCAACGGGAGGTGCGCTAACGAGTGGATGCTGACCCAAAACACACGC
AGCAGCTGCCGCCCTTGAATCAAACAAGCCTCCGATCTTGTGCGGCTACA
TAGCCCCATGTCATGTGGCATCTTCAGGAATGTTGCCCGTGTGTGGGAAC
AACCTCATGTCCGCCCCTGTCTTCCTCTCTCCGCATATTCCACAATCAGA
CTCTCATACTGCCGTGAGCCCCGCGCCCTGCTTGCCACCCGCCTCTCCTC
CCCTGTACAGCGGCCTTCGGCAGCGGATGATTCGAGCAAATCATTCAACG
CCGTCCCTAAGTTTACAACCTACGCAACGAAGAGCGACAGCCCAGCACGT
TCGCCCTCCTCTCTGGTCATTCTTTGGTAAGCTCCCCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9779:3656..4746-

>mRNA_Ecto-sp13_S_contig9779.21427.1 ID=mRNA_Ecto-sp13_S_contig9779.21427.1|Name=mRNA_Ecto-sp13_S_contig9779.21427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9779:3656..4746- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGAGCGCATACGATAGGCACCTCTCACGAGCCTACTACTTGTTGTT
GTTGTGCTCTTGCCGTGCCATTGTCGATCTCCGGGCCGCGCTTCGTTGGT
CGAAGACAACAGCCCAAGACCCCTGTTCTCTCACCTCTCCCCACCTACCC
ACCGCCAAAAAAACTCCAATTTTGACATCGAGCATTGCCCAAGAATCAAC
CGTACTTCAACCAGTCAATGGTCCTCTATCTCTAGTGAAAAAGAACCTGC
TCCTACCCGCGTCGTGGGGTTGA
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