mRNA_Ecto-sp13_S_contig9772.21424.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9772.21424.1
Unique NamemRNA_Ecto-sp13_S_contig9772.21424.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9772.21424.1 vs. uniprot
Match: D8LIH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH3_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 5.520e-101
Identity = 177/202 (87.62%), Postives = 179/202 (88.61%), Query Frame = 1 
Query:  244 MGTHIRVHPSRLDCAAIALVLAHNIRHGYGFTAPVTADVGVAHHHSPQDTAPRQAATCSASGGLCGGPRIRRGHPRRPRAARIPFALEAHAPDSDAANDKELEGGSRNRQQLRPRPYRDSGVRAGDADSSALPRQQRKSKADKGGRQATMSLSQLKATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIATCGNARQ 849
            MGTH RVHPSRLDCAAI LVLAHNIR GYGF  PVT DVGVAH HSPQDT P QAATC ASGGLCG PR RRGHPRRPRA RIPFALEAHAPD DAAN K+LEGGSRNRQQL  RPYRDSGVRAG A SSALPRQQRKSKADKGGRQA M +S LKATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIA CGNARQ
Sbjct:    1 MGTHGRVHPSRLDCAAIGLVLAHNIRDGYGFWGPVT-DVGVAHRHSPQDTGPSQAATCGASGGLCGAPRTRRGHPRRPRAGRIPFALEAHAPDGDAANRKKLEGGSRNRQQLGARPYRDSGVRAGGAGSSALPRQQRKSKADKGGRQAGMPMSHLKATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQ 201
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BLAST of mRNA_Ecto-sp13_S_contig9772.21424.1 vs. uniprot
Match: A0A6H5L5M2_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M2_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 3.140e-75
Identity = 143/166 (86.14%), Postives = 145/166 (87.35%), Query Frame = 1 
Query:  352 ADVGVAHHHSPQDTAPRQAATCSASGGLCGGPRIRRGHPRRPRAARIPFALEAHAPDSDAANDKELEGGSRNRQQLRPRPYRDSGVRAGDADSSALPRQQRKSKADKGGRQATMSLSQLKATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIATCGNARQ 849
            A  GV H HS QDTAPRQAATCSASGGLCG PR RRG PRR RAARIPFALEAHAPD DAAND ELE G R RQQL  RPYRDSGVRAGDADSS  PRQQRKSK DKGGRQA+MS+SQLKATLREAKQ GDWRKALDVLDRMQEQGVKPDSQNYSSAIA CGNARQ
Sbjct:   19 AFTGVTHRHSLQDTAPRQAATCSASGGLCGAPRTRRGRPRRLRAARIPFALEAHAPDGDAANDTELESGPRKRQQLGARPYRDSGVRAGDADSSTPPRQQRKSKTDKGGRQASMSMSQLKATLREAKQDGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQ 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9772.21424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIH3_ECTSI5.520e-10187.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M2_9PHAE3.140e-7586.14PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9772contigEcto-sp13_S_contig9772:2091..5032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score346.3
Seed ortholog evalue3.8e-92
Seed eggNOG ortholog2880.D8LIH3
Model size2333
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-18_003670.1
Cds size2331
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464241.2817047-CDS-Ecto-sp13_S_contig9772:2090..24421681464241.2817047-CDS-Ecto-sp13_S_contig9772:2090..2442Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9772 2091..2442 +
1681464241.291681-CDS-Ecto-sp13_S_contig9772:2948..35411681464241.291681-CDS-Ecto-sp13_S_contig9772:2948..3541Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9772 2949..3541 +
1681464241.2999232-CDS-Ecto-sp13_S_contig9772:3646..50321681464241.2999232-CDS-Ecto-sp13_S_contig9772:3646..5032Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9772 3647..5032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9772.21424.1prot_Ecto-sp13_S_contig9772.21424.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9772 2091..5032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9772.21424.1

>prot_Ecto-sp13_S_contig9772.21424.1 ID=prot_Ecto-sp13_S_contig9772.21424.1|Name=mRNA_Ecto-sp13_S_contig9772.21424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=777bp
SEGKTEHLKWEGFCDLPARSAAKYCKNRQQRLRFVFFPPRRPVSMERCVC
FSKLVILLLVSFRSLLAVLLSLLSRKRMAVSMGTHIRVHPSRLDCAAIAL
VLAHNIRHGYGFTAPVTADVGVAHHHSPQDTAPRQAATCSASGGLCGGPR
IRRGHPRRPRAARIPFALEAHAPDSDAANDKELEGGSRNRQQLRPRPYRD
SGVRAGDADSSALPRQQRKSKADKGGRQATMSLSQLKATLREAKQYGDWR
KALDVLDRMQEQGVKPDSQNYSSAIATCGNARQWERAVELLASMAARGTP
PDVLTYSSAIAACAKGGQWETAVDLLQEMPAVGLAPDVITYSTVIDACAK
RGQWEPAFRLLMEMPTKGMVANIITYSIVIGACAKWGQWEEAVALLREMQ
EHGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVI
SACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWL
LREMPATGLTPNVISYNSAIDACAKTGRSKIAVDLLREMPTHGLAPDVIT
YSAVIASCAMGRQWEEALGLFKEMQRQGVTPDVVSCNTAINACAQGGRWE
EALDVLGEMPTMGLTPDAISYRTAIDACAKGGRWKEIADLLREIPAVGLT
PDAISYRSAMGACSADGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAK
DGRWKEATVLLRQMPTFGLAPNVNSFNAAIDACGNGDQWGTAVDVLFEMR
ALGVSPNEMTYLTAMYACERCGEKGD*
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mRNA from alignment at Ecto-sp13_S_contig9772:2091..5032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9772.21424.1 ID=mRNA_Ecto-sp13_S_contig9772.21424.1|Name=mRNA_Ecto-sp13_S_contig9772.21424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2942bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9772:2091..5032+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGAAGGCAAAACTGAACACTTGAAATGGGAAGGATTTTGCGATTTGCC
CGCAAGAAGTGCGGCGAAGTACTGTAAAAACAGACAGCAAAGGTTGCGTT
TTGTTTTTTTTCCACCTCGCCGCCCCGTTTCTATGGAGCGCTGCGTCTGC
TTCAGTAAACTAGTCATACTACTGCTTGTGTCATTTCGCTCACTGCTTGC
TGTGCTCTTGTCGCTCCTGTCTCGGAAGAGAATGGCTGTCTCCATGGGAA
CACATATACGGGTGCATCCGAGTCGACTCGATTGTGCGGCAATTGCGCTG
GTGCTGGCGCACAACATACGTCACGGTTATGGTTTCACGGCACCGGTAAC
AGGTGCGTTTAGATTTAGATTCCTCTCGCCTCTCCCTCTCCCTCTCTCTC
TCCCCCCCCTCCCCCCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT
CTCTCTCGTACTCCCCCCCCTCGCGCTCCGCGCTTGCCATACGATCTACG
GTTGGTCATGCTTGGTGGGGAACAGTACTTGTACACATCCTCCATTCTGT
GTGGACTTCGATACTGCGAACAACGGGTGGTGAATGGCATGACCAACAAG
AAAACTCGGCGAGATATGATTATGGGCAAGGCCAGTGAACTGTCTTCGCT
GCCACGTGACAAGCGTTATTATTTTGGTGTATGTTGGTGCAGGATGAACA
GCGGTTCGTTGCTGAAGTCGTTAGTTCATAACATTAGCCGTACCATCACG
TTTGTGCTGGTTCTGCACATCTAGCTGTTTCCGCTCCACCGCACGGTCTT
AGCCTTCACCGGTTATGCACAAAAAGCATTGACCCAGTCCCGCACCCCCG
CCCCCCAGCAGATGTAGGTGTCGCGCACCACCACAGCCCGCAAGACACAG
CCCCCCGCCAGGCGGCCACGTGCAGTGCTTCGGGAGGCCTCTGCGGAGGC
CCCCGAATACGCCGGGGTCACCCCCGGCGACCGCGGGCAGCCAGGATACC
CTTCGCTCTCGAAGCGCATGCTCCCGACAGCGATGCTGCCAACGACAAGG
AGCTTGAGGGTGGGTCGAGAAATAGACAGCAACTGCGCCCCCGGCCTTAC
CGGGACTCGGGGGTTAGGGCTGGGGACGCAGACTCAAGTGCACTCCCGCG
ACAGCAAAGAAAATCCAAAGCGGACAAGGGCGGCCGGCAGGCAACCATGT
CTTTGTCCCAGTTGAAGGCGACATTGCGCGAAGCGAAGCAGTACGGGGAC
TGGAGGAAGGCGCTAGATGTTCTGGACAGGATGCAGGAGCAGGGGGTGAA
GCCAGACTCCCAGAATTACAGCTCAGCCATCGCCACCTGTGGCAACGCGA
GGCAATGGGAAAGGGCGGTTGAGCTGCTGGCATCGATGGCGGCGCGAGGA
ACTCCGCCCGACGTTCTCACCTACAGCTCGGCAATTGCTGCTTGTGCAAA
GGTGAGTCGGTGGAAGGAAGCTGTGGGCTTGCTGAGATCAATGAAAGGGC
AAGGAATAAAACCCAACGTCATCGTCTACAGTTCAGCTATCTCGGCGTGC
AGAAAGGGTGGGCAGTGGGAGACTGCCGTGGATCTACTTCAAGAGATGCC
GGCGGTGGGCCTGGCCCCAGACGTGATCACCTACAGCACGGTGATCGATG
CTTGCGCCAAGAGGGGACAGTGGGAACCGGCGTTCCGCCTGCTGATGGAG
ATGCCGACGAAGGGGATGGTCGCCAATATCATCACCTACAGCATCGTTAT
CGGTGCTTGCGCGAAGTGGGGTCAGTGGGAGGAGGCTGTGGCTTTACTAC
GGGAAATGCAGGAGCACGGCGTAGCCCCTGACGTCATCACCTATAGTTCA
ACCATCAGCGCGTGCGCCAAGAAGGGGCAGTGGGAAGAGGCCGTGGGCCT
GCTGAGAGAGATGCCGATGGAGGGGGTAACCCCCAATGCAATCAGCTACG
GTATTGTGATCTCCGCTTGTGCGAAGAGGGGGCGGTGGAGGGAGGCCATC
GACCTACTTCAGGAGATGCAGGCGCATGGAGTGCCCCCAGACGTCATAAA
CTACAGCGCGGCCATTGACGCTTGCGCACAAGCGAGTCGGTGGGAACAGG
CGCTGTGGCTTCTACGAGAGATGCCAGCGACGGGGCTTACCCCCAACGTC
ATCAGCTACAACTCTGCCATCGATGCCTGTGCGAAAACTGGTCGATCGAA
GATTGCCGTTGATCTGCTGAGGGAGATGCCGACGCATGGGTTGGCCCCCG
ATGTGATCACCTACAGCGCGGTCATTGCGTCATGTGCTATGGGGAGGCAG
TGGGAGGAGGCTCTGGGTTTATTTAAAGAGATGCAGCGGCAGGGAGTAAC
CCCAGATGTGGTCAGCTGCAACACAGCCATCAACGCTTGCGCGCAAGGGG
GTCGGTGGGAGGAGGCTTTAGATGTACTAGGAGAGATGCCGACCATGGGG
CTTACCCCCGACGCCATCAGCTATCGGACAGCCATCGATGCGTGTGCGAA
AGGGGGTCGATGGAAAGAGATTGCTGATCTTCTGAGAGAGATACCGGCGG
TAGGGCTTACCCCGGATGCCATTAGCTACAGGTCCGCCATGGGTGCATGC
TCAGCGGACGGACTGTGGAAGGAAGCTCTCGTGTTGCTGAGAGACATGCT
GGCGGTTGGGCTTTCCCCCGATGTCGTCACTTACAACTCGGCCATCAACG
CTTGTGCAAAGGACGGACGATGGAAGGAGGCAACGGTGCTGCTGAGACAG
ATGCCGACATTTGGGCTTGCCCCCAACGTTAACAGCTTCAACGCAGCAAT
CGACGCTTGCGGAAACGGGGACCAATGGGGAACGGCAGTTGACGTGCTCT
TTGAAATGCGGGCACTAGGAGTTTCCCCAAACGAGATGACGTACCTCACT
GCGATGTACGCATGTGAGAGATGCGGCGAGAAAGGCGATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9772:2091..5032+

>mRNA_Ecto-sp13_S_contig9772.21424.1 ID=mRNA_Ecto-sp13_S_contig9772.21424.1|Name=mRNA_Ecto-sp13_S_contig9772.21424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2331bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9772:2091..5032+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGAAGGCAAAACTGAACACTTGAAATGGGAAGGATTTTGCGATTTGCC
CGCAAGAAGTGCGGCGAAGTACTGTAAAAACAGACAGCAAAGGTTGCGTT
TTGTTTTTTTTCCACCTCGCCGCCCCGTTTCTATGGAGCGCTGCGTCTGC
TTCAGTAAACTAGTCATACTACTGCTTGTGTCATTTCGCTCACTGCTTGC
TGTGCTCTTGTCGCTCCTGTCTCGGAAGAGAATGGCTGTCTCCATGGGAA
CACATATACGGGTGCATCCGAGTCGACTCGATTGTGCGGCAATTGCGCTG
GTGCTGGCGCACAACATACGTCACGGTTATGGTTTCACGGCACCGGTAAC
AGCAGATGTAGGTGTCGCGCACCACCACAGCCCGCAAGACACAGCCCCCC
GCCAGGCGGCCACGTGCAGTGCTTCGGGAGGCCTCTGCGGAGGCCCCCGA
ATACGCCGGGGTCACCCCCGGCGACCGCGGGCAGCCAGGATACCCTTCGC
TCTCGAAGCGCATGCTCCCGACAGCGATGCTGCCAACGACAAGGAGCTTG
AGGGTGGGTCGAGAAATAGACAGCAACTGCGCCCCCGGCCTTACCGGGAC
TCGGGGGTTAGGGCTGGGGACGCAGACTCAAGTGCACTCCCGCGACAGCA
AAGAAAATCCAAAGCGGACAAGGGCGGCCGGCAGGCAACCATGTCTTTGT
CCCAGTTGAAGGCGACATTGCGCGAAGCGAAGCAGTACGGGGACTGGAGG
AAGGCGCTAGATGTTCTGGACAGGATGCAGGAGCAGGGGGTGAAGCCAGA
CTCCCAGAATTACAGCTCAGCCATCGCCACCTGTGGCAACGCGAGGCAAT
GGGAAAGGGCGGTTGAGCTGCTGGCATCGATGGCGGCGCGAGGAACTCCG
CCCGACGTTCTCACCTACAGCTCGGCAATTGCTGCTTGTGCAAAGGGTGG
GCAGTGGGAGACTGCCGTGGATCTACTTCAAGAGATGCCGGCGGTGGGCC
TGGCCCCAGACGTGATCACCTACAGCACGGTGATCGATGCTTGCGCCAAG
AGGGGACAGTGGGAACCGGCGTTCCGCCTGCTGATGGAGATGCCGACGAA
GGGGATGGTCGCCAATATCATCACCTACAGCATCGTTATCGGTGCTTGCG
CGAAGTGGGGTCAGTGGGAGGAGGCTGTGGCTTTACTACGGGAAATGCAG
GAGCACGGCGTAGCCCCTGACGTCATCACCTATAGTTCAACCATCAGCGC
GTGCGCCAAGAAGGGGCAGTGGGAAGAGGCCGTGGGCCTGCTGAGAGAGA
TGCCGATGGAGGGGGTAACCCCCAATGCAATCAGCTACGGTATTGTGATC
TCCGCTTGTGCGAAGAGGGGGCGGTGGAGGGAGGCCATCGACCTACTTCA
GGAGATGCAGGCGCATGGAGTGCCCCCAGACGTCATAAACTACAGCGCGG
CCATTGACGCTTGCGCACAAGCGAGTCGGTGGGAACAGGCGCTGTGGCTT
CTACGAGAGATGCCAGCGACGGGGCTTACCCCCAACGTCATCAGCTACAA
CTCTGCCATCGATGCCTGTGCGAAAACTGGTCGATCGAAGATTGCCGTTG
ATCTGCTGAGGGAGATGCCGACGCATGGGTTGGCCCCCGATGTGATCACC
TACAGCGCGGTCATTGCGTCATGTGCTATGGGGAGGCAGTGGGAGGAGGC
TCTGGGTTTATTTAAAGAGATGCAGCGGCAGGGAGTAACCCCAGATGTGG
TCAGCTGCAACACAGCCATCAACGCTTGCGCGCAAGGGGGTCGGTGGGAG
GAGGCTTTAGATGTACTAGGAGAGATGCCGACCATGGGGCTTACCCCCGA
CGCCATCAGCTATCGGACAGCCATCGATGCGTGTGCGAAAGGGGGTCGAT
GGAAAGAGATTGCTGATCTTCTGAGAGAGATACCGGCGGTAGGGCTTACC
CCGGATGCCATTAGCTACAGGTCCGCCATGGGTGCATGCTCAGCGGACGG
ACTGTGGAAGGAAGCTCTCGTGTTGCTGAGAGACATGCTGGCGGTTGGGC
TTTCCCCCGATGTCGTCACTTACAACTCGGCCATCAACGCTTGTGCAAAG
GACGGACGATGGAAGGAGGCAACGGTGCTGCTGAGACAGATGCCGACATT
TGGGCTTGCCCCCAACGTTAACAGCTTCAACGCAGCAATCGACGCTTGCG
GAAACGGGGACCAATGGGGAACGGCAGTTGACGTGCTCTTTGAAATGCGG
GCACTAGGAGTTTCCCCAAACGAGATGACGTACCTCACTGCGATGTACGC
ATGTGAGAGATGCGGCGAGAAAGGCGATTGA
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