mRNA_Ecto-sp13_S_contig9771.21423.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9771.21423.1
Unique NamemRNA_Ecto-sp13_S_contig9771.21423.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9771.21423.1 vs. uniprot
Match: D7FKD9_ECTSI (MutS protein homolog 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD9_ECTSI)

HSP 1 Score: 460 bits (1183), Expect = 2.580e-157
Identity = 241/246 (97.97%), Postives = 243/246 (98.78%), Query Frame = 3
Query:    3 AKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDLFIPNDTFIADGSRVALITGANCSGKSVYLKQVGVAVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTAPADGIGLVAALLRHLSRKGRKCLFTLHFHEIFSHGLVRVSGPDELHTDLKDVSVFRMDVHVPSPPKAQESQ 740
            AKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDLFIPNDTFIADGSRVALITGANCSGKSVYLKQVGVAVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQ+AQM RTSTPRSLLLIDEFGKGTAPADGIGLVAALLRHLSRKGRKCLFTLHFHEIFSH LV+VSGPDELHTDLKDVSVFRMDVHVPSPPKA ESQ
Sbjct:  351 AKIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDLFIPNDTFIADGSRVALITGANCSGKSVYLKQVGVAVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQVAQMARTSTPRSLLLIDEFGKGTAPADGIGLVAALLRHLSRKGRKCLFTLHFHEIFSHDLVKVSGPDELHTDLKDVSVFRMDVHVPSPPKAPESQ 596          
BLAST of mRNA_Ecto-sp13_S_contig9771.21423.1 vs. uniprot
Match: A0A482T1K6_9ARCH (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T1K6_9ARCH)

HSP 1 Score: 208 bits (530), Expect = 1.010e-61
Identity = 111/233 (47.64%), Postives = 160/233 (68.67%), Query Frame = 3
Query:    6 KIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDLFIPNDTFIADGSRVALITGANCSGKSVYLKQVGVAVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTAPADGIGLVAALLRHLSRKGRKCLFTLHFHEI-FSHGLVRVSGPDELHTDLKDVSVFRMD 701
            +I+  LE+ L+  EG++  A + +A LDA ++L  +A +     P + +D VI+IK GRH LQE+ VD F+PND+ +     VALI+G N SGKS+YLKQVG+ VYLAH+GSFVP E+A+IGLTD+I TRI T E+ S+PQSSFT+D+ Q++++++  T RSL LIDEFGKGT PADG+ L+AA++   + +    +F LHF EI F H + + S        +  ++ FRM+
Sbjct:   93 QILLHLEEGLLDLEGSIVQATTSIATLDAFISLGIMARECNLSAPHIHDDPVIVIKGGRHLLQELTVDSFVPNDSLLTPEKNVALISGPNSSGKSIYLKQVGIIVYLAHIGSFVPCEQAIIGLTDKILTRIKTTESVSVPQSSFTMDLTQMSKILKYRTDRSLCLIDEFGKGTNPADGMALLAAIIEDFTERKSNAIFVLHFTEILFDHAIKQES--------MDSINCFRME 317          
BLAST of mRNA_Ecto-sp13_S_contig9771.21423.1 vs. uniprot
Match: A0A2R6WVC4_MARPO (DNA_MISMATCH_REPAIR_2 domain-containing protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WVC4_MARPO)

HSP 1 Score: 205 bits (521), Expect = 2.520e-59
Identity = 110/192 (57.29%), Postives = 141/192 (73.44%), Query Frame = 3
Query:   54 LHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDLFIPNDTFIADGSRVALITGANCSGKSVYLKQVGVAVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTAPADGIGLVAA-LLRHLSRKGR-KCLFTLHFHEIF 623
            L +AA V AE+D   ALA  A D+G+VRP++ ED+V++I+NGRH LQEM  + ++PNDT I    R+ ++TG N SGKS+Y KQV +  +LAH+GSFVPA+KA+IG+ DRIFTR+A+ ET  + QSSF ID+NQI+ M+R ST RSL LIDEFGKGT  +DGIGL+ A LL   SRK   K L   HF EIF
Sbjct:  217 LESAAKVAAEIDCVTALAIAARDYGYVRPDLREDDVLIIENGRHVLQEMTANRYVPNDTHITKEGRINIVTGPNYSGKSIYAKQVALITFLAHIGSFVPADKAIIGIQDRIFTRVASKETVGISQSSFMIDLNQISVMLRHSTSRSLCLIDEFGKGTLTSDGIGLLCATLLEFASRKSPPKVLACTHFSEIF 408          
BLAST of mRNA_Ecto-sp13_S_contig9771.21423.1 vs. uniprot
Match: I0YMF5_COCSC (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YMF5_COCSC)

HSP 1 Score: 207 bits (527), Expect = 3.620e-58
Identity = 114/216 (52.78%), Postives = 148/216 (68.52%), Query Frame = 3
Query:    9 IMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDLFIPNDTFI-ADGSRVALITGANCSGKSVYLKQVGVAVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTAPADGIGLVAALLRHLS--RKGRKCLFTLHFHEIFSHGLVRVS 647
            I  EL   L A   +L  A ++ AE+D  L+LA  A DFG+ RP + +DNV+ IK GRHPL E+ VD FIPNDT + AD +RV +ITG N SGKS Y KQV + V+LAH+GSFVPA +A +GLTDRIFTRI T E  S+PQS+F ID++Q++ M+R + PRSL +IDEFGKGT  ADG GL+ A+LRH +  R   + +   HF E+     +R S
Sbjct:  533 ICSELIQRLAAFGPSLSRAVALAAEVDCLLSLAQCARDFGYSRPRLTQDNVLHIKQGRHPLAELVVDRFIPNDTAMHADSARVQVITGPNYSGKSCYAKQVALIVFLAHIGSFVPAAEATVGLTDRIFTRIVTTEAQSVPQSAFMIDMSQVSNMLRHAGPRSLCIIDEFGKGTLAADGFGLLCAVLRHFTAQRPSPRVIAVTHFIEVLHEAYLRRS 748          
BLAST of mRNA_Ecto-sp13_S_contig9771.21423.1 vs. uniprot
Match: A0A1X7UDR7_AMPQE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UDR7_AMPQE)

HSP 1 Score: 207 bits (526), Expect = 4.190e-58
Identity = 109/215 (50.70%), Postives = 151/215 (70.23%), Query Frame = 3
Query:    9 IMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDLFIPNDTFIADGSR--VALITGANCSGKSVYLKQVGVAVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTAPADGIGLVAALLRHLSRKGRKC---LFTLHFHEIFSHGLV 638
            +M  L+  L+   GAL +      ELD  ++++ +A +  FV+PE+ EDNVI IKNGRHPLQE+ V+ F+PNDT ++D +   + ++TGAN SGKSVYL QVG+ VYLAH+GSFVPAE A IG+ D IFTR+ T E+ S+ QS+F ID+NQ++  V+  T RSL+L+DEFGKGTA  DG+ L+AA+LRH  +K  +C   L + HFH +    L+
Sbjct:  517 MMHRLQSVLMEHSGALISVIECTTELDCLVSMSKLAKEHNFVKPELTEDNVIYIKNGRHPLQELCVNTFVPNDT-VSDSAHGTMKILTGANASGKSVYLTQVGLIVYLAHIGSFVPAEAAKIGIMDGIFTRVQTRESVSIAQSTFLIDINQVSTAVQCGTHRSLILLDEFGKGTATVDGLALLAAVLRHWLKKEEECPHILVSTHFHSLLDQKLL 730          
BLAST of mRNA_Ecto-sp13_S_contig9771.21423.1 vs. uniprot
Match: D8R9G5_SELML (DNA_MISMATCH_REPAIR_2 domain-containing protein (Fragment) n=6 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R9G5_SELML)

HSP 1 Score: 202 bits (513), Expect = 4.270e-58
Identity = 102/206 (49.51%), Postives = 150/206 (72.82%), Query Frame = 3
Query:    9 IMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDLFIPNDTFIADGSRVALITGANCSGKSVYLKQVGVAVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTAPADGIGLVAALLRHL--SRKGRKCLFTLHFHEI 620
            I++ELE  +   E A+  +A + A+LD  +++A  AG++ + RP +VED++++IKNGRHPLQE+ VD F+PN+T I +  R+ ++TG N SGKSVY+KQV + V+L+H+GSFVPA++AVIG+TDRIFTR+   +++ +PQS+F  D++QI+ M+R +T +SL LIDEFG GT  ADGIGL+ + L H   S    K L   HF E+
Sbjct:  212 ILKELESKVQKYEPAVRYSADLTAQLDCLVSMAISAGEYNYNRPRLVEDDILIIKNGRHPLQELTVDTFVPNNTQIEEKGRICVVTGPNYSGKSVYIKQVALIVFLSHIGSFVPADEAVIGITDRIFTRLPCKQSTKVPQSTFMTDLHQISVMLRYATSKSLCLIDEFGSGTMSADGIGLLCSTLHHFAGSESSPKILACTHFSEL 417          
BLAST of mRNA_Ecto-sp13_S_contig9771.21423.1 vs. uniprot
Match: D8SEG8_SELML (DNA_MISMATCH_REPAIR_2 domain-containing protein (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SEG8_SELML)

HSP 1 Score: 201 bits (511), Expect = 8.400e-58
Identity = 102/206 (49.51%), Postives = 150/206 (72.82%), Query Frame = 3
Query:    9 IMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDLFIPNDTFIADGSRVALITGANCSGKSVYLKQVGVAVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTAPADGIGLVAALLRHL--SRKGRKCLFTLHFHEI 620
            I++ELE  +   E A+  +A + A+LD  +++A  AG++ + RP +VED++++IKNGRHPLQE+ VD F+PN+T I +  R++++TG N SGKSVY+KQV + V+L+H+GSFVPA++AVIG TDRIFTR+   +++ +PQS+F  D++QI+ M+R +T +SL LIDEFG GT  ADGIGL+ + L H   S    K L   HF E+
Sbjct:  212 ILKELESKVQKYEPAVRYSADLTAQLDCLVSMAISAGEYNYNRPRLVEDDILIIKNGRHPLQELTVDTFVPNNTQIEEKGRISVVTGPNYSGKSVYIKQVALIVFLSHIGSFVPADEAVIGTTDRIFTRLPCKQSTKVPQSTFMTDLHQISVMLRYATSKSLCLIDEFGSGTMSADGIGLLCSTLHHFAGSESSPKILACTHFSEL 417          
BLAST of mRNA_Ecto-sp13_S_contig9771.21423.1 vs. uniprot
Match: A0A2R6WVE1_MARPO (DNA_MISMATCH_REPAIR_2 domain-containing protein n=5 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WVE1_MARPO)

HSP 1 Score: 205 bits (521), Expect = 1.000e-57
Identity = 110/192 (57.29%), Postives = 141/192 (73.44%), Query Frame = 3
Query:   54 LHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDLFIPNDTFIADGSRVALITGANCSGKSVYLKQVGVAVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTAPADGIGLVAA-LLRHLSRKGR-KCLFTLHFHEIF 623
            L +AA V AE+D   ALA  A D+G+VRP++ ED+V++I+NGRH LQEM  + ++PNDT I    R+ ++TG N SGKS+Y KQV +  +LAH+GSFVPA+KA+IG+ DRIFTR+A+ ET  + QSSF ID+NQI+ M+R ST RSL LIDEFGKGT  +DGIGL+ A LL   SRK   K L   HF EIF
Sbjct:  549 LESAAKVAAEIDCVTALAIAARDYGYVRPDLREDDVLIIENGRHVLQEMTANRYVPNDTHITKEGRINIVTGPNYSGKSIYAKQVALITFLAHIGSFVPADKAIIGIQDRIFTRVASKETVGISQSSFMIDLNQISVMLRHSTSRSLCLIDEFGKGTLTSDGIGLLCATLLEFASRKSPPKVLACTHFSEIF 740          
BLAST of mRNA_Ecto-sp13_S_contig9771.21423.1 vs. uniprot
Match: A0A507EXU8_9FUNG (LysM domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507EXU8_9FUNG)

HSP 1 Score: 205 bits (522), Expect = 6.590e-57
Identity = 106/222 (47.75%), Postives = 154/222 (69.37%), Query Frame = 3
Query:    6 KIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDLFIPNDTFIADGS---RVALITGANCSGKSVYLKQVGVAVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTAPADGIGLVAALLRHLSRKGRKC---LFTLHFHEIFSHGLVRVSGP 653
            +I++ L++ ++     L   A+V AELD  L+LA  A  + + RPE+  +N+ ++  GRHPLQE+ VD+F+ NDT + D     R+ L+TGAN SGKSVYLKQ+ +  Y+AH+GSFVPAE+AVI LTD+I TRI T E+ S  QS+F ID+ Q++  +R+ST RSL+L+DEFGKGT  ADGIGL+  +L+  +++G  C   +   HFHEIF++ L+ +  P
Sbjct: 1508 EIIQRLQETVLGYRATLIQVANVCAELDCILSLADAAKKYNYTRPEMTGENIFLVVKGRHPLQELCVDVFVANDTSMGDADDLPRMILLTGANFSGKSVYLKQIALITYMAHIGSFVPAERAVIRLTDKILTRIQTRESVSKMQSTFMIDLQQVSVALRSSTRRSLVLLDEFGKGTDTADGIGLLCGVLQDFAKRGEDCPHVIAATHFHEIFTYNLLTIPEP 1729          
BLAST of mRNA_Ecto-sp13_S_contig9771.21423.1 vs. uniprot
Match: A0A2H3JD94_WOLCO (Nucleoside triphosphate hydrolase protein n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3JD94_WOLCO)

HSP 1 Score: 194 bits (492), Expect = 1.490e-56
Identity = 111/245 (45.31%), Postives = 152/245 (62.04%), Query Frame = 3
Query:    6 KIMRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDLFIPNDTF------------------IADGSR-----VALITGANCSGKSVYLKQVGVAVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIAQMVRTSTPRSLLLIDEFGKGTAPADGIGLVAALLRHLSRKGRKC---LFTLHFHEIFSHGLVRVSGPDEL 662
            +I++ L + +I  + AL   + V AELD  L+ A  A    +VRP + E N+I IK GRHPLQE+ VD F+PNDTF                  I+D SR     + + TGAN  GKSVYLKQV +  Y+A +GSFVPAE A +G+ D+IFTR+ T E+ S  QS+F ID+NQ++  +R +T RSL+L+DEFGKGT  ADG GL   +L+HL+ +G  C   L   HF ++FS+GL+    PD +
Sbjct:   47 EIVQSLLEKIIVFDKALSHISDVCAELDCLLSFAEAARGCNYVRPHMTEGNIIDIKQGRHPLQELVVDTFVPNDTFVIGGQGVGVEPVGVSDETISDSSRKESNSIIICTGANACGKSVYLKQVALIQYMAQIGSFVPAESATLGIVDKIFTRLQTRESVSRVQSAFMIDLNQVSLALRNATERSLILLDEFGKGTISADGAGLFCGVLKHLAGRGPMCPKVLAATHFQDVFSNGLI---SPDSV 288          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9771.21423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKD9_ECTSI2.580e-15797.97MutS protein homolog 5 n=1 Tax=Ectocarpus siliculo... [more]
A0A482T1K6_9ARCH1.010e-6147.64DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A2R6WVC4_MARPO2.520e-5957.29DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
I0YMF5_COCSC3.620e-5852.78DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A1X7UDR7_AMPQE4.190e-5850.70DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
D8R9G5_SELML4.270e-5849.51DNA_MISMATCH_REPAIR_2 domain-containing protein (F... [more]
D8SEG8_SELML8.400e-5849.51DNA_MISMATCH_REPAIR_2 domain-containing protein (F... [more]
A0A2R6WVE1_MARPO1.000e-5757.29DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A507EXU8_9FUNG6.590e-5747.75LysM domain-containing protein n=1 Tax=Spizellomyc... [more]
A0A2H3JD94_WOLCO1.490e-5645.31Nucleoside triphosphate hydrolase protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9771contigEcto-sp13_S_contig9771:2534..6108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score460.3
Seed ortholog evalue5.6e-127
Seed eggNOG ortholog2880.D7FKD9
Preferred nameMSH5
Model size740
KEGG koko:K08741
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000710,GO:0000712,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0007276,GO:0007292,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0010777,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030983,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0033554,GO:0034641,GO:0035825,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0048609,GO:0050896,GO:0051026,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051704,GO:0051716,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046
Exons6
EggNOG free text desc.chiasma assembly
EggNOG OGsCOG0249@1,KOG0221@2759
Cds size729
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9771.21423.1prot_Ecto-sp13_S_contig9771.21423.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9771 2545..6108 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464241.1995156-UTR-Ecto-sp13_S_contig9771:2533..25441681464241.1995156-UTR-Ecto-sp13_S_contig9771:2533..2544Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9771 2534..2544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464241.2095888-CDS-Ecto-sp13_S_contig9771:2544..26761681464241.2095888-CDS-Ecto-sp13_S_contig9771:2544..2676Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9771 2545..2676 +
1681464241.2181115-CDS-Ecto-sp13_S_contig9771:3036..30871681464241.2181115-CDS-Ecto-sp13_S_contig9771:3036..3087Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9771 3037..3087 +
1681464241.2259426-CDS-Ecto-sp13_S_contig9771:3553..36641681464241.2259426-CDS-Ecto-sp13_S_contig9771:3553..3664Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9771 3554..3664 +
1681464241.233775-CDS-Ecto-sp13_S_contig9771:4321..44711681464241.233775-CDS-Ecto-sp13_S_contig9771:4321..4471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9771 4322..4471 +
1681464241.2418833-CDS-Ecto-sp13_S_contig9771:5001..51711681464241.2418833-CDS-Ecto-sp13_S_contig9771:5001..5171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9771 5002..5171 +
1681464241.2496154-CDS-Ecto-sp13_S_contig9771:5993..61081681464241.2496154-CDS-Ecto-sp13_S_contig9771:5993..6108Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9771 5994..6108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9771.21423.1

>prot_Ecto-sp13_S_contig9771.21423.1 ID=prot_Ecto-sp13_S_contig9771.21423.1|Name=mRNA_Ecto-sp13_S_contig9771.21423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=243bp
MRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNV
IMIKNGRHPLQEMAVDLFIPNDTFIADGSRVALITGANCSGKSVYLKQVG
VAVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQIA
QMVRTSTPRSLLLIDEFGKGTAPADGIGLVAALLRHLSRKGRKCLFTLHF
HEIFSHGLVRVSGPDELHTDLKDVSVFRMDVHVPSPPKAQESQ
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mRNA from alignment at Ecto-sp13_S_contig9771:2534..6108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9771.21423.1 ID=mRNA_Ecto-sp13_S_contig9771.21423.1|Name=mRNA_Ecto-sp13_S_contig9771.21423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3575bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9771:2534..6108+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCGAAGATCATGCGAGAGCTCGAAGATGCATTGATAGCGGAGGAGGGC GCCTTGCATGCGGCGGCATCTGTCTTGGCGGAGCTTGACGCGGCTTTGGC CCTAGCCTCCGTAGCAGGAGACTTCGGCTTCGTCCGACCGGAGGTATCAA AACGGAGTTTGACTCTACCTCAGTCGTGTTCCCTTGCTCATGGCACGGGG CCTAGAGGAAACTGCTTTCAGACGTCTGATAAGCACACACCGATTGTGAC ATGCATCATTTGCCTCGTTCACGAAGTGTTTCCCTCGGTTTTTGCAAGGG ATTCATCTTCAACAACGCCTTGAACGGCGTTCAGCGCTTGATCTTATCGA GAGCGCAAAAATCTCTTTTGTCTCCAGCCAAGTCACGCATGGCGGAAATC GTCATCGACTCACGGCGCTTGCAGTGCTGTCTGACGCATTTCTCCTCCCC TGGAGACCGGTAATGGTGTTTCTAATGCGGTTTTGTCCCGCATCGTATTC CAGGTGGTGGAGGATAACGTGATCATGATCAAGAACGGGCGGCACCCTCT TCAGGTGAGGACGTCAATCCAGGTTTGCGAGCCTCACTCATCGAATCTCT TGAGCTCTCTCGAGCTCGGCAATGGCGTGTTCTACCCAGCAGAAGGCGTA ATGCATCCAAAAAGAAACACGATACATTTGTGGGCGAAGGTTTCCAAATT TCAACAGTCTCTGCCACCCTTCCGTGCAGCAATCCAGGCGTGGGGGCTGC CCACGTTGCTCGTCAATGGCACTAACCGATTATCGTGTTTACACGGATAC ACACCCGACCACACCTCCAAGTTGAAGGGAGGATGGTGCTGAGGGCAGTA TTACACGGAACCCCGCCCACGTTATGTGAGTATGGCCAACAGGGGTCCGA GCAAGGAAGGCTGGTACGTACCATATATTTTATGTCCATCCACGCTCGAA AAATGCTTGACAAGTTTCGATAGAGTTGTCTGCCTCTGCTCCGGTACTTT TTCAAAACCTCCTGTATCAGGAAATGGCCGTGGACTTATTCATCCCGAAC GATACCTTCATCGCGGATGGCAGCCGGGTGGCACTCATCACTGGGGCGAA CTGCTCAGGAAAGAGCGTTTACCTCAAACAGGTCAGCGTGTAAAAACCGG TCGGCCGCGATATTACTCTGCTAGTTTCTGTGGGAGCCAAAGGCAAGGGG TAGTGTGCACTCATCGATATCATTTGGTGCATACCCTGGTAGAGAACGTC GTGTTTTCCAAGCACATCGATATTTATTCTCGGAAGAGAACGCTTTACCG TGCGCGCTCACAATACCTGGGGTTTTCAGCTGAGACCTCTCGCTGTTAGG CCTATTTCAGAGGGTCCTTGAGTTCGTGGTTGCTGTAGTGGCATACATTA GAAGCATGGTGTTCATGCTGCATCCCACACATTCATCTCGCGTCTAGCTT TCCGACATCCCATCTTTCGTATGAACGGACCAAGCGTTTTCCCCAACCGT TGTTTCTGACTTCCTGGGGTGGGAGTGGGGGGCGGTAGTTCTGCTGGCGG GAGTGCGGCCTATGTATCAGGAATATGCTACATAAACCTATCTCCTACAG CTTTGCCGATCGGTTTGCCCCCATCGTTAGTTTCGGAGGGCGGGCAAACC CCGAATCTCAACAAAATTGAACCTATCTCCTACAGCTTTGCCGATCGGTT TGTCCCAATCGTTAGTTTCGGAGGGCGGGCAAACCCCGAATCTCAACAAA ATTGAAACATTCCGAACCGCGTTCTGTTCCGGTGGCAGGTCGGAGTGGCG GTATATCTGGCGCACGTTGGATCGTTTGTCCCAGCGGAAAAGGCGGTGAT CGGCTTGACCGACCGCATTTTTACTCGAATAGCCACAGTGGAGACGTCCT CCCTGCCACAGAGCTCGTTCACCATCGACGTAAATCAGGTATGTGAAAAA CGAAGGGGGGAATTCCTCACATTTCCTACAGTCCAGTACCGAACAAGCGC GGAGTGGTATTTCCACCAAAGTGGATGATTTATCTCCAGCAAGCTCTCAA ACGACGCACGTCGAGTTACTCCACGGTCGGTCTGCCGGGAAACTACGGTC AGGTGTTGTAAAGAAAACCCGCATCTCAGCTAAATCTCACCGAAAAGTTC GCGAACGATTACCGCTAACCTATTTCGAAGAGTATGGAGTACCCCAACTT TTGTTGAAAGTCGGTAGCACCTTGCCAGCAATCTCCGGGATTACCTGAGT TCGGGAGCCCGTCAATCACTCAGGCCCAGAATGCGCAACGTCTGCCATTG CAAGTCCTATATCTGGGACAGGTCTCTTCGATCTTCCAAACCTCCCCCAG TGGAACTCGGATTGTAAGCTATATCTCGATGAACTGCAGAAAGTCAATCG AACACAGCGAGGAACAGATGCGGCAAACTCGGCCTCCGTTCGCTCCCTCC GTCCTTGCACGCGTACAGATCGCCCAGATGGTGCGTACCAGCACGCCGAG ATCTCTTCTTCTCATCGATGAGTTCGGGAAGGGCACCGCCCCCGCTGACG GCATCGGTCTGGTGGCGGCCCTGCTGCGCCATCTCTCTCGCAAGGGTCGC AAGTGCCTCTTCACTCTGCACTTTCATGAGATTTTCAGGTGTGTTTGATT GAGGTTGGTATCGTGTTGGTTGTTTCGCCTTCCATCGTGCTAGCGTTATT CCCCGAGCTCTGTCTCTCTCGCCAACCTCGTTCTACCGCTTCATTACCAG CCTAGCCTCTAGGTATCCTCGGGTGCATTCTGGGAACAAATCGAGGGAAA CCTTTCCATGGGAGTCAGGCTTTTCCATGGTCAGATCTGTCCGTTGGTCA GTGGGGATTGCGAACGGTACGTGTGGTCAAATGGCCAAAGAATGCTTAGC GGAAACGTGTTCCACGCTTTGGTGGGAACGTGTCGAGAACCTGCTCATAC GATTTTTTTTTTGTTCTTCACTTCAAATCAGCGCTCACAGCACTAGTGCC GTTTACTCCAACCCGTGGTCACACAGAAGAGTCCCTCTCTACCCTCCCCT CCTGCGGTACTTTGACTTCAATTTTTAATGCGAGAAGAGGTCAGCACTCT CTTCCCTCTGTGTACACACGAACTAAGGCTATCCACTTGGCCAGGAGCGG AAGCGAGAGAAAAACTCACATTGCAACGAAAGCTCGCCTACGCCGGGAGT CGAACCCCTGCCCTGACCTCTAGAAGGTTTCCAGGTTACCAACTAGACCA CCGGGGAGACCGAATGATGAAGGACGGACCATGAATGCACTCGGCTCGAC GACCAGCTCCAACAAGGAGTTTACGGCTTTCTTGTTGGACCCTCCCGTGA ATGGCGGACGATACCATTGCTCTTTCCGTGGGGTCAGTGTTCACCTCCCT CCCTCCCTCCCTACCTGCCTGTCTGTCTCTCCCCTCAACGGGCCGCACCC ACTCTCCAAGCCACGGCCTGGTGAGGGTCAGCGGCCCGGACGAACTGCAC ACGGATCTCAAAGACGTCAGCGTGTTCCGGATGGACGTGCACGTACCCTC TCCGCCGAAAGCGCAAGAGTCTCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9771:2534..6108+

>mRNA_Ecto-sp13_S_contig9771.21423.1 ID=mRNA_Ecto-sp13_S_contig9771.21423.1|Name=mRNA_Ecto-sp13_S_contig9771.21423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9771:2534..6108+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAGAGCTCGAAGATGCATTGATAGCGGAGGAGGGCGCCTTGCATGC
GGCGGCATCTGTCTTGGCGGAGCTTGACGCGGCTTTGGCCCTAGCCTCCG
TAGCAGGAGACTTCGGCTTCGTCCGACCGGAGGTGGTGGAGGATAACGTG
ATCATGATCAAGAACGGGCGGCACCCTCTTCAGGAAATGGCCGTGGACTT
ATTCATCCCGAACGATACCTTCATCGCGGATGGCAGCCGGGTGGCACTCA
TCACTGGGGCGAACTGCTCAGGAAAGAGCGTTTACCTCAAACAGGTCGGA
GTGGCGGTATATCTGGCGCACGTTGGATCGTTTGTCCCAGCGGAAAAGGC
GGTGATCGGCTTGACCGACCGCATTTTTACTCGAATAGCCACAGTGGAGA
CGTCCTCCCTGCCACAGAGCTCGTTCACCATCGACGTAAATCAGATCGCC
CAGATGGTGCGTACCAGCACGCCGAGATCTCTTCTTCTCATCGATGAGTT
CGGGAAGGGCACCGCCCCCGCTGACGGCATCGGTCTGGTGGCGGCCCTGC
TGCGCCATCTCTCTCGCAAGGGTCGCAAGTGCCTCTTCACTCTGCACTTT
CATGAGATTTTCAGCCACGGCCTGGTGAGGGTCAGCGGCCCGGACGAACT
GCACACGGATCTCAAAGACGTCAGCGTGTTCCGGATGGACGTGCACGTAC
CCTCTCCGCCGAAAGCGCAAGAGTCTCAG
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