mRNA_Ecto-sp13_S_contig9766.21417.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9766.21417.1
Unique NamemRNA_Ecto-sp13_S_contig9766.21417.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9766.21417.1 vs. uniprot
Match: D8LQ44_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ44_ECTSI)

HSP 1 Score: 540 bits (1390), Expect = 7.270e-180
Identity = 287/307 (93.49%), Postives = 289/307 (94.14%), Query Frame = 1 
Query:    1 QIDFSRRDPILRGLNDFLPQLMPTLYNFLVQQWMGYKAAVAAAGGASAGVGATEAALMNRALNLLSKIMPWAGEKSMGEEPNDFLPAIAQLSTLRVARSESLVCLEAMCSQKLSEKHFHRLLEHLPEMVQHVKQALAQEALPLSESLEVHQMLSACLEETMMRNINYIAGEKDFQNRNSRKSELLSKFLEEVLQLTKMPSKRMAGNLIQAWQTLANKPNAKDMPAFVVMVPQLVAAFASHIVT---VSWLAGSRVGQLPLSVMPIHRSAVRFEDDVTDDPVAAEEFVDEEDYFQFISGFRTQVSASQ 912
            +IDFSRRDPILRGLNDFLPQLMPTLYNFLVQQWMGYKAAVAAAGGASAGVGATEAALMNRALNLLSKIMPWAGEKSMGEEPNDFLPAIAQLSTLRVARSESLVCLEAMCSQKLSEKHFHRLLEHLPEMVQHVKQALAQEALPLSESLEVHQMLSACLEETMMRNINYIAGEKDFQNRNSRKSELLSKFLEEVLQLTKMPSKRMAGNLIQAWQTLANKPNAKDMPAFVVMVPQLVAAFASHIVT         S VGQ PL VM  HRS VRFEDDVTDDPVAAEEFVDEEDYFQF+SGFRTQV   Q
Sbjct:  198 EIDFSRRDPILRGLNDFLPQLMPTLYNFLVQQWMGYKAAVAAAGGASAGVGATEAALMNRALNLLSKIMPWAGEKSMGEEPNDFLPAIAQLSTLRVARSESLVCLEAMCSQKLSEKHFHRLLEHLPEMVQHVKQALAQEALPLSESLEVHQMLSACLEETMMRNINYIAGEKDFQNRNSRKSELLSKFLEEVLQLTKMPSKRMAGNLIQAWQTLANKPNAKDMPAFVVMVPQLVAAFASHIVTRRQCHECTSSSVGQFPLKVMRTHRSEVRFEDDVTDDPVAAEEFVDEEDYFQFVSGFRTQVKLLQ 504
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9766.21417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ44_ECTSI7.270e-18093.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9766contigEcto-sp13_S_contig9766:643..6143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score543.5
Seed ortholog evalue6.3e-152
Seed eggNOG ortholog2880.D8LQ44
Model size912
KEGG koko:K14289
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsCOG5101@1,KOG2020@2759
Cds size912
COG Functional cat.UY
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03016,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9766.21417.1prot_Ecto-sp13_S_contig9766.21417.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9766 643..6143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464240.6226249-CDS-Ecto-sp13_S_contig9766:642..7561681464240.6226249-CDS-Ecto-sp13_S_contig9766:642..756Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9766 643..756 -
1681464240.6392303-CDS-Ecto-sp13_S_contig9766:1093..11391681464240.6392303-CDS-Ecto-sp13_S_contig9766:1093..1139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9766 1094..1139 -
1681464240.6612911-CDS-Ecto-sp13_S_contig9766:2609..28251681464240.6612911-CDS-Ecto-sp13_S_contig9766:2609..2825Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9766 2610..2825 -
1681464240.6742094-CDS-Ecto-sp13_S_contig9766:3076..31981681464240.6742094-CDS-Ecto-sp13_S_contig9766:3076..3198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9766 3077..3198 -
1681464240.69275-CDS-Ecto-sp13_S_contig9766:4257..44131681464240.69275-CDS-Ecto-sp13_S_contig9766:4257..4413Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9766 4258..4413 -
1681464240.7076416-CDS-Ecto-sp13_S_contig9766:5435..56201681464240.7076416-CDS-Ecto-sp13_S_contig9766:5435..5620Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9766 5436..5620 -
1681464240.717119-CDS-Ecto-sp13_S_contig9766:6070..61431681464240.717119-CDS-Ecto-sp13_S_contig9766:6070..6143Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9766 6071..6143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9766.21417.1

>prot_Ecto-sp13_S_contig9766.21417.1 ID=prot_Ecto-sp13_S_contig9766.21417.1|Name=mRNA_Ecto-sp13_S_contig9766.21417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp
QIDFSRRDPILRGLNDFLPQLMPTLYNFLVQQWMGYKAAVAAAGGASAGV
GATEAALMNRALNLLSKIMPWAGEKSMGEEPNDFLPAIAQLSTLRVARSE
SLVCLEAMCSQKLSEKHFHRLLEHLPEMVQHVKQALAQEALPLSESLEVH
QMLSACLEETMMRNINYIAGEKDFQNRNSRKSELLSKFLEEVLQLTKMPS
KRMAGNLIQAWQTLANKPNAKDMPAFVVMVPQLVAAFASHIVTVSWLAGS
RVGQLPLSVMPIHRSAVRFEDDVTDDPVAAEEFVDEEDYFQFISGFRTQV
SASQ
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mRNA from alignment at Ecto-sp13_S_contig9766:643..6143-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9766.21417.1 ID=mRNA_Ecto-sp13_S_contig9766.21417.1|Name=mRNA_Ecto-sp13_S_contig9766.21417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9766:643..6143- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATCGACTTCAGCCGGAGAGATCCTATCCTGAGAGGGCTCAACGATTT
CTTGCCCCAACTCATGCCAACATGTGAGTAAGACGCTACCGTCAACCTGG
TGTGCTGCTGATTTTGACACGTGGACCTTGCTGGTTGAGCGTGCCATGTG
AGTAAACGCTTGGTTGTTGGACAGACGCCCCAGCACTACTGATGCTGGGT
CTTACAGACTTATTTTTGTCTGTTTTCTTCTTACAAGAAGCGGAAGAACT
TAATCTTGATCTCTCTCTCGCCAAAGAAAAAAGAGTCCAGAATAAATTTG
CAAATCTTCACGCCATCGTTGTATGACCAGCCATGGTTACGCTCACCTTT
TTCTTACCGTATAATGTAAACGGAAAGAACATCTCTATTTATCCACAGAT
GAGAAGAGTCCAGGACAAATTAGCAACGTCCTCACAGCTATCTGTCGCTC
TACTCATCTTCGAGCAACATGCAGCAGAAAGCGATCCATGATTTTGTCCC
CCCTGCCCGACGGCATTCGGCAGTGTACAACTTCCTGGTGCAGCAGTGGA
TGGGCTACAAGGCTGCCGTCGCGGCGGCAGGTGGCGCTTCCGCGGGAGTC
GGGGCTACGGAGGCGGCTCTCATGAACCGGGCGCTCAACCTGCTGTCCAA
GATCATGCCCTGGGCCGGCGAGAAGAGCATGGGAGAGGAGCCCAACGACT
TCTTACCGGTGGGCGATGCCTCTCAAAGGACGCATGCAGTGATGGTGGTG
TTGTTTTTTCGCGTTGAGGGGATTACTACAATACGTCTCCTTCGATGTTG
TTTGTCTGTGTCGCTTTGTCGGAGGGAGCATGGAGTGCTCGGTGTTGTTT
TGTCGCGTCGACGGGAGTACTTATGACTCTCCTTCGATGTTGTCTGTGTC
GCGTCCCTCGGTCTGAGGGGCAGAGCGTCGGCGGGAAGGGCACACGGCTC
CTTGACTTCGTGGCTACTGTGATTAATCAACCGTCAGTGGTCTGCCTCTT
GTTGTTTTTGCTGTTGTCTTGGCTCCTACACAGCTAGATTATAGTCTAGT
CATTACGGTACTTGTAGCGTGACCGCTGTTTCGTTGTTTTTGCTGTGGTG
TGCTAGGTGTGTTAAGGCCGTTGTGTAGAAAGCGATCTGCTTCAAAAAGT
TCAAAATTTCCAATTCCGTAGACATGTAGACCTCGATTTGCGGCCGAGGA
AAAAAATTGGAAATTTGGAAATGTCTGGAACCGAAAAGGTTGAAACGAAT
TTTGTAATTTGGAGGTTCTGGAAGCAAAATCGCTGTGCATACGACGGCCC
TTATTATCGTGGCTTGTGGCCTTTTGTATTAGCCCATCTTGGTCTGGTCG
TGTGAGCGACAATTCACGTTGTTCAAAGGTACGCGAGCGTGTTTGGAGAC
TCTGTGAAGGCGTTTCTGGCGCAAGTAGCGACCCAGTGGTTAATTGTGTT
CACATGATACGACTTTACTGTTTTTGATGTCTTGTACCTGCGCACCCACA
CGTGCTCCGTCCTCGTGTGATTGCTGTCTTTGGCAGAAGTTTCGGTTACT
TGTGGTCGTGTCGTTGAAGGTTAAGCCGATGCCGTGATTCATGCCCCTGC
TCCGCCTTCCTTGTGCTGCATTAATTGATGCCCTTCAGTGTTATCCTGCG
TCCTCATAGTTGCTGGTGTTGTTGTTATCGTCGTTGGTGCTGCTGGTGCT
GCTACCGTTGATGCCATGGCATTTTTTTAGGCAATCGCGCAGCTGAGCAC
CCTGCGGGTGGCGAGGAGCGAGTCTCTGGTGTGCCTCGAGGCGATGTGTT
CCCAGAAGCTGTCGGAAAAGCATTTCCACCGCCTGCTGGAGCACTTGCCC
GAGATGGTGCAGCACGTCAAGCAAGCCCTGGCACAGGTGAGTAGCGTTCC
TAGGGTTTTTTCTACTAAATAGGTAAACATGTTGGATAAGCCGTGCAATC
GGGAACGTAATGTTGGATTAACCCCCTCCCTATCCTGTTATATTTCCTCA
TGAGCTTGATTTCTCTCGAAGGCGATCCGTAGCCTTCGCAGGGTTTTTCG
TTGAAGTAAACATGTCGGATGAAGCAGTATTCGAGGAAGTTGGATTAGGG
ATAGGGAAGGGTCTGTGTACCCCCTCCCTGATCTATTTCCTCATCATCAA
CTTAATTTCTCGCGAAGGCGGTCCAAAGAAAGACCTGCTGCTGTTGGTGA
TATCGGAGCTGATATTAAAAGTTGCTGCTGTTGCTGGTCTCGTGGTGGTG
GTGATGGTGATGGTGTTTTTTTGATTTTTTTTTTTTTTAAACTGCTGAGT
TTGTTGCTGGGTCTAAGTATGCTGCTGCTGCTGGTTTAGTGGGATGTTGT
CGTGGCACTCTCATGTTTTGATATATTTTTTCAGTCAAGTCACCGATGGT
TCCTTAGTATGTTACATGAGCAGCGGGAGTGAGGGTCGTGTGCCCGAGTG
TGCATTATTGTAGATGAAATCGAATCGCAGCTCTTACGTCGGGGAGGCAA
GAAAGCAGGAAGCTCAGGAACGACGAGCGATTGGAAATACACCAATAAAA
AGCATGACCAAGCAAGTGATTCAGAACAAAAGAATAACTGGCATGGCCTA
GAAAGTAGTGTAGAATAAATGAATGGCCAAGAGTGCGCTGTAGAATGAAA
GAGTTAAATGGCATGGCCAAGAAAGTGATTTAGAATAACCTACAGAATGG
AAAACCCGCTCAAGTATATCAAACTCGAACGGTCTGGGGTAATGGGTCTG
TGACCACGGAAGGCGCACGCGTCAGGTGGACCGGTGCGGGGGTCGGAAGG
TGCCGAGAAAGTGACCGGTACCTTTTTTTTATGTCATCACAACAACACCA
CCAACAACAACAACAGCAACAGCGTTTGAAGCACGTTCCGTGTGGTTTTC
CGTCTGGTGTGCGGGTTTCCGTGAACGTGCGTGTACTGTACCCAGGAGGC
GTTACCGTTGTCGGAGTCGCTGGAGGTGCATCAGATGCTTAGCGCGTGTC
TAGAGGAGACGATGATGAGGAACATCAACTACATCGCCGGGGAGAAGGAT
TTTCAGAACAGAAACAGGTGATTTTGAACCAAGTCTCAATCGCAGGTAGA
TGCTCTTTGTGTGTTTTTATTTCGTGACATGTAACCCAGTCTCTCGATCG
CACGCAGAATGCTCTTGATTTTTCACCAGGTCTCAATCGCTCGCAGAATG
CTCGTTGTACTGATTTTTTTCGGACTTGCCCTTCTTTCTCGGAAAAGGAG
GGAGTTTCGCACGCGCACCATCCTCACCTTGCACTACTTTTTGTTTTCCC
ATTCACGGCGACGCTTAGCCGGAAGTCGGAGCTGCTGTCGAAGTTCCTCG
AGGAGGTGCTGCAGCTGACCAAGATGCCATCGAAGCGCATGGCCGGGAAC
CTGATCCAGGCGTGGCAGACCCTGGCCAACAAACCAAACGCTAAGGACAT
GCCCGCCTTCGTGGTGATGGTGCCGCAGCTCGTGGCCGCCTTCGCCTCGC
ACATCGTCACGGTGAGTTGGTTGGCCGGTTCCCGGTCGAATTCGGGTACA
CCTGAGTCTAATGTGTTGTACCTTTTTAATCGTGACGGTGATTGGTTGGT
TGGTTCTCGGTGGAATTCGGGTATACCTATGTATTGCACTTTTGTCATCG
TAACGGTGATTAGTTGGTCGCTTTCCGGTCGAATTCGGGTACACCTGAGT
CTAATCTTTTTCATCGTCACGGTGTTTTGGTTGGTTGGTTCCCGGTGGAA
TTCGGGTATAACTATGTGTTGTACCTTCATCGTCGTCACAGTGATTTGGT
TGGTTGGGTCCCGATGGAACTCGGGTATACCGATGTGTTGTACCTTTATC
ATCGTGACGGTGATCGGTTGGTTGGGTTCCGGTGGAATTCGGGTATGCCC
ATGTGTTATACCTTTTTCATCGTAACAGTGATTGGGTGGTTTGTTCCCGG
TGGAACTCGGGTACAACTGGGTTGTGGCTGATGTGTTGTACCTTGATCAT
CGTGACAGTATTGAGCTGGTTGGTTCCCGGTCAAATTCGGGCACACCTGA
GTTGTTTCTGGTGTTTTGTACCTATATCATTATCAGTGGTTGGTTGGTCT
CAATCAAATCCGGGTACAACTAGTTGTGTCTGATGTTTGCTACCCGTACA
GTTTTGCCTTCGTTCGTCCAATGTCAAGGGTAGAGTCAAGTGATATCGGG
CGGGTATTTGCAAAGAACAAAATCACATACTTGTAGCTTCAGGTTTGAGG
TCGGGTTTCGCTCGCGATCGTAGCGAAGGGTTGGTTTTGACTGGCTGAAT
TGAACAGTCTCTGTTTCAGGAACTGCCAACAGGCAGAAGGTCGAGCAACA
CTTGTCCCCGCACACAGGGACGCCACACGTACAATTTGCAATATTCTTGA
CAAGGAACATGGGATTTCGCTCTCTTGCACACACACCGTTCCCTACGAGC
AGCCCCCCTTGCTAGGACATCCGCCGCTTATGCGCGCACGGTACTCGACT
CCAACAGCAGTGGCGTCAACAACACCTTTTTTTTATGTTACTAGTGTTTC
GGATATGGACACGTGGAATCAAGCAAGCACACTCCCTTCCCCTAGTCCCT
TCCATGGGGCGAAGATGGAGGAAGTTTTTTTCGTTTGCGACAGCAACAAT
TCCCGGCGCCTGCGTCACATCCGGTTTCCGGAAGCCTTGCTAGAAAATTC
CCACGCAAGGAGACGCTATCAGAGCCGAACATCACGTCCACATTCCTGAA
GTCGACTCTTCGACGGAACGGTACACGTTTAGTCTGGTATCTCCCTCGTC
GATCACCATTCTGAACACCCTGGGGATGGTGTGTTGTTGTCCCCCGACTG
CGACGGACAGGGATGTTTCTTCCATGATCGACTGTGCTCGCAGCCAGTAC
CTGGTAGGAATTATGACTAGACCAGCCTGCTACACAAACTCCAGTAATGG
CTGGGGCCGTCACCCCTCGTAGCGCTGACTATCCCACGGGTACATCGTGT
CGAGTGTCGGTCAGCTTCCTCTCTCAGTCATGCCTATCCATCGCTCGGCG
GTAATTAGTGCAATAATGTTTGCGTGTGTGTAGTGAAATGCAGTTCCGTT
CGAAGGATATGGTGCGAACGGTCAGGCCCTGATGCGGCCGAGGTCTTTGA
TCTTTTTTTCGTGCGGCGAAACAAACTTTCACGCCTCACGCTGCTGTACG
TTTTATGTTTGTTTTCCGCACGCGCAAACACATATGGTCCGCCGCTACAA
TAACTCCGGAGGTACCATAGTTTTGTTAACCAAATAGTCACCCGCGAGAT
ATGTACATATTTTCGAGTGTTTCCGCGTTAAGTTTATCGGCGGTCACGTT
GTGCGCTTCGTGCCGTTTCGTCGTGCCGTTTCATCAGGTTCGTTTCGAGG
ATGACGTCACGGATGACCCTGTCGCGGCGGAAGAGTTTGTAGACGAGGAG
GACTACTTCCAATTCATATCTGGCTTCCGAACACAGGTGAGTGCCTCGCA
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9766:643..6143-

>mRNA_Ecto-sp13_S_contig9766.21417.1 ID=mRNA_Ecto-sp13_S_contig9766.21417.1|Name=mRNA_Ecto-sp13_S_contig9766.21417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9766:643..6143- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATCGACTTCAGCCGGAGAGATCCTATCCTGAGAGGGCTCAACGATTT
CTTGCCCCAACTCATGCCAACATTGTACAACTTCCTGGTGCAGCAGTGGA
TGGGCTACAAGGCTGCCGTCGCGGCGGCAGGTGGCGCTTCCGCGGGAGTC
GGGGCTACGGAGGCGGCTCTCATGAACCGGGCGCTCAACCTGCTGTCCAA
GATCATGCCCTGGGCCGGCGAGAAGAGCATGGGAGAGGAGCCCAACGACT
TCTTACCGGCAATCGCGCAGCTGAGCACCCTGCGGGTGGCGAGGAGCGAG
TCTCTGGTGTGCCTCGAGGCGATGTGTTCCCAGAAGCTGTCGGAAAAGCA
TTTCCACCGCCTGCTGGAGCACTTGCCCGAGATGGTGCAGCACGTCAAGC
AAGCCCTGGCACAGGAGGCGTTACCGTTGTCGGAGTCGCTGGAGGTGCAT
CAGATGCTTAGCGCGTGTCTAGAGGAGACGATGATGAGGAACATCAACTA
CATCGCCGGGGAGAAGGATTTTCAGAACAGAAACAGCCGGAAGTCGGAGC
TGCTGTCGAAGTTCCTCGAGGAGGTGCTGCAGCTGACCAAGATGCCATCG
AAGCGCATGGCCGGGAACCTGATCCAGGCGTGGCAGACCCTGGCCAACAA
ACCAAACGCTAAGGACATGCCCGCCTTCGTGGTGATGGTGCCGCAGCTCG
TGGCCGCCTTCGCCTCGCACATCGTCACGGTGAGTTGGTTGGCCGGTTCC
CGTGTCGGTCAGCTTCCTCTCTCAGTCATGCCTATCCATCGCTCGGCGGT
TCGTTTCGAGGATGACGTCACGGATGACCCTGTCGCGGCGGAAGAGTTTG
TAGACGAGGAGGACTACTTCCAATTCATATCTGGCTTCCGAACACAGGTG
AGTGCCTCGCAA
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