mRNA_Ecto-sp13_S_contig9765.21416.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9765.21416.1
Unique NamemRNA_Ecto-sp13_S_contig9765.21416.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9765.21416.1 vs. uniprot
Match: D7G3Y0_ECTSI (Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Y0_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 3.640e-52
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    1 QVSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLL 273
            +VSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLL
Sbjct:  587 EVSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLL 677
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BLAST of mRNA_Ecto-sp13_S_contig9765.21416.1 vs. uniprot
Match: A0A7S0WAR6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WAR6_9CRYP)

HSP 1 Score: 157 bits (397), Expect = 1.310e-46
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:    1 QVSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLL 273
            +VSPLAKPHRTK G TERFE+F  GRE+ANAFSELTDPVDQR RFELQAAKKAAGDEEACDVD+DFL ALE GMPPT GLGIG+DRL+MLL
Sbjct:  112 EVSPLAKPHRTKEGLTERFELFCYGRELANAFSELTDPVDQRERFELQAAKKAAGDEEACDVDEDFLMALEYGMPPTGGLGIGVDRLVMLL 202
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BLAST of mRNA_Ecto-sp13_S_contig9765.21416.1 vs. uniprot
Match: A0A7S4IYE9_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IYE9_9EUKA)

HSP 1 Score: 156 bits (395), Expect = 1.800e-46
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:    1 QVSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLL 273
            ++SPLAKPHRTKPG TERFE+FV GRE+ANAFSELTDP DQR RFE QAAKKAAGDEEAC VD+DFL+ALE GMPPT GLGIGIDRLIMLL
Sbjct:   87 EISPLAKPHRTKPGLTERFELFVVGRELANAFSELTDPTDQRQRFEEQAAKKAAGDEEACGVDEDFLNALEVGMPPTGGLGIGIDRLIMLL 177
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BLAST of mRNA_Ecto-sp13_S_contig9765.21416.1 vs. uniprot
Match: A0A7S1Y9P4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y9P4_9STRA)

HSP 1 Score: 152 bits (385), Expect = 2.920e-45
Identity = 71/91 (78.02%), Postives = 84/91 (92.31%), Query Frame = 1 
Query:    1 QVSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLL 273
            +VSPL+KPHR+KPG  ERFE+F  GRE+AN+FSELTDP+DQR RFE+QA+KKAAGDEEACDVD++FL ALE+GMPPT GLGIGIDRL+MLL
Sbjct:   75 EVSPLSKPHRSKPGLVERFELFAVGRELANSFSELTDPIDQRERFEVQASKKAAGDEEACDVDEEFLTALEQGMPPTGGLGIGIDRLVMLL 165
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BLAST of mRNA_Ecto-sp13_S_contig9765.21416.1 vs. uniprot
Match: A0A7S2YDU3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YDU3_9STRA)

HSP 1 Score: 152 bits (383), Expect = 7.890e-45
Identity = 74/91 (81.32%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 QVSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLL 273
            +VSPLAKPHR+K G  ERFE+F  GRE AN+FSELTDPVDQR RFE QAAKKAAGDEEACDVD+DFL ALE+GMPPT GLGIGIDRL+MLL
Sbjct:   87 EVSPLAKPHRSKSGLVERFELFAVGREHANSFSELTDPVDQRERFEAQAAKKAAGDEEACDVDEDFLQALEQGMPPTGGLGIGIDRLVMLL 177
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BLAST of mRNA_Ecto-sp13_S_contig9765.21416.1 vs. uniprot
Match: A0A835Z710_9STRA (Lysine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z710_9STRA)

HSP 1 Score: 160 bits (405), Expect = 7.930e-45
Identity = 77/91 (84.62%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:    1 QVSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLL 273
            +VSPLAKPHR+KPGYTERFE+F+ GRE ANAFSELTD VDQR RFE+QAAKKAAGD+EACDVD+DF+DALE G+PPTAGLGIGIDRLIMLL
Sbjct:  369 EVSPLAKPHRSKPGYTERFELFIVGRETANAFSELTDSVDQRQRFEVQAAKKAAGDDEACDVDEDFIDALEYGLPPTAGLGIGIDRLIMLL 459
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BLAST of mRNA_Ecto-sp13_S_contig9765.21416.1 vs. uniprot
Match: A0A7S2SVL9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVL9_9STRA)

HSP 1 Score: 154 bits (389), Expect = 9.560e-45
Identity = 73/91 (80.22%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:    1 QVSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLL 273
            ++SPLAKPHR+KPG TERFE+FV GRE+ANAFSELTDP+DQR RFELQAAKKA+GDEEA DVD+D+L A+E+GMPPT GLGIGIDRL+MLL
Sbjct:  173 EISPLAKPHRSKPGCTERFELFVVGRELANAFSELTDPIDQRQRFELQAAKKASGDEEAHDVDEDYLQAMEQGMPPTGGLGIGIDRLVMLL 263
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BLAST of mRNA_Ecto-sp13_S_contig9765.21416.1 vs. uniprot
Match: A0A7S2U5Z7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5Z7_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.380e-44
Identity = 75/91 (82.42%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    1 QVSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLL 273
            +VSPLAKPHRTKPG  ERFE+F  GRE+ANAFSELTDPVDQR RFE QAAKKAAGDEEACDVD++FL ALE+GMPP  GLGIGIDRL+MLL
Sbjct:  259 EVSPLAKPHRTKPGLVERFELFATGRELANAFSELTDPVDQRQRFEAQAAKKAAGDEEACDVDEEFLQALEQGMPPAGGLGIGIDRLVMLL 349
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BLAST of mRNA_Ecto-sp13_S_contig9765.21416.1 vs. uniprot
Match: A0A7S3X2U5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3X2U5_9SPIT)

HSP 1 Score: 150 bits (379), Expect = 1.760e-44
Identity = 73/91 (80.22%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 QVSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLL 273
            +VSPLAKPHR++PG TERFE+F  GRE+ANAFSELTDPVDQR RFE QAAKK AGD+EAC VD+DFL ALE GMPPT GLGIGIDRL+MLL
Sbjct:   72 EVSPLAKPHRSRPGVTERFELFAVGRELANAFSELTDPVDQRVRFEAQAAKKEAGDDEACGVDEDFLRALEHGMPPTGGLGIGIDRLVMLL 162
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BLAST of mRNA_Ecto-sp13_S_contig9765.21416.1 vs. uniprot
Match: A0A7R9WDT7_9STRA (Lysine--tRNA ligase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WDT7_9STRA)

HSP 1 Score: 156 bits (395), Expect = 4.720e-44
Identity = 76/91 (83.52%), Postives = 84/91 (92.31%), Query Frame = 1 
Query:    1 QVSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAAKKAAGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLL 273
            +VSPLAKPHR+KPG TERFE+F+ GRE+ANAFSELTDPVDQR RFE QAAKK AGDEEACDVD+DFL ALE+GMPPT GLGIGIDRL+MLL
Sbjct:  337 EVSPLAKPHRSKPGLTERFELFITGRELANAFSELTDPVDQRVRFEAQAAKKEAGDEEACDVDEDFLLALEQGMPPTGGLGIGIDRLVMLL 427
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9765.21416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Y0_ECTSI3.640e-5298.90Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S0WAR6_9CRYP1.310e-4684.62Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S4IYE9_9EUKA1.800e-4684.62Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S1Y9P4_9STRA2.920e-4578.02Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2YDU3_9STRA7.890e-4581.32Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A835Z710_9STRA7.930e-4584.62Lysine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2SVL9_9STRA9.560e-4580.22Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2U5Z7_9STRA1.380e-4482.42Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3X2U5_9SPIT1.760e-4480.22Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7R9WDT7_9STRA4.720e-4483.52Lysine--tRNA ligase n=1 Tax=Pseudictyota dubia Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9765contigEcto-sp13_S_contig9765:4962..5875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score183.7
Seed ortholog evalue3.8e-44
Seed eggNOG ortholog2880.D7G3Y0
Preferred nameMSK1
Model size273
KEGG rclassRC00055,RC00523
KEGG koko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000049,GO:0000166,GO:0000959,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006403,GO:0006412,GO:0006418,GO:0006430,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006810,GO:0006839,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0015931,GO:0016031,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0022414,GO:0030554,GO:0032501,GO:0032502,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0035670,GO:0035927,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050657,GO:0050658,GO:0051031,GO:0051179,GO:0051234,GO:0051236,GO:0055085,GO:0061458,GO:0070127,GO:0070154,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090567,GO:0097159,GO:0097367,GO:0099402,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990542
Exons2
EggNOG free text desc.lysyl-tRNA aminoacylation
EggNOG OGsCOG1190@1,KOG1885@2759
EC6.1.1.6
Cds size273
COG Functional cat.J
BiGG ReactioniMM904.YNL073W,iND750.YNL073W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464240.5773573-CDS-Ecto-sp13_S_contig9765:4961..50781681464240.5773573-CDS-Ecto-sp13_S_contig9765:4961..5078Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9765 4962..5078 -
1681464240.5914125-CDS-Ecto-sp13_S_contig9765:5719..58751681464240.5914125-CDS-Ecto-sp13_S_contig9765:5719..5875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9765 5720..5875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9765.21416.1prot_Ecto-sp13_S_contig9765.21416.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9765 4962..5875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9765.21416.1

>prot_Ecto-sp13_S_contig9765.21416.1 ID=prot_Ecto-sp13_S_contig9765.21416.1|Name=mRNA_Ecto-sp13_S_contig9765.21416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
QVSPLAKPHRTKPGYTERFEVFVQGREMANAFSELTDPVDQRNRFELQAA
KKAAGDEEACDVDDDFLDALERGMPPTAGLGIGIDRLIMLL
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mRNA from alignment at Ecto-sp13_S_contig9765:4962..5875-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9765.21416.1 ID=mRNA_Ecto-sp13_S_contig9765.21416.1|Name=mRNA_Ecto-sp13_S_contig9765.21416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=914bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9765:4962..5875- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGAGCCCGCTCGCGAAGCCCCACCGCACCAAACCCGGATACACGGA
ACGCTTCGAGGTGTTCGTGCAGGGCAGGGAGATGGCCAACGCCTTCAGCG
AGCTCACCGACCCCGTCGACCAGCGCAACCGCTTCGAGCTGCAGGCCGCT
AAGAAGGTAGTTGGGGTGTGCATTAGCCCAGGGAGGCGAAGGTATCTCGT
GCGTTCTTTTTTTGGTTTTGCAGCGCGGAGATACAGGTGGCGATGCTGAC
TGCTGTGTCCAGGCGAATTGATCTCGTGTTTCTGTTGTTTTTTATTTCAG
AGAACTTTGTCGAGGCGGTTGTTTTTGGTGTTGGTACTGGTCGGGACGGC
TTCAGTTGAAAGAATGCGCGACCAATGTTCGTGCTTTGCTTGAGTTGGAA
GAACGCTCGACCAATGTTGGTGCTTTGGTCGCGCGCTCCGGTGTATCTTT
ATCCTTGGCCGCCACTGCTGCTTGCTTGGTTTACTGATGTTGTCGACCCA
TCGGTGGCACTGCTGCTATGTAGGTGGTGAACGTCTCTTGAATCCCGACT
GCTTCATGCAGCCATCCACCTCATCATGACCTTTTGCTTGTCGACTCCCA
TACCGGTTGATCGCTCTCGCCCGACGTTTTTCCCATCAAATCCGGGGGCT
TTCCCAAATGGAGCAGCAGATAATCTTCTTATCGAACCAGACAAGCACCT
CGACCCCGCCCCCCCCTCCTATCCGCTGAATCCCCCTCGTCAATGACGAT
CACTAACTGTGGCTTACAATCGAATTCGTGCGTCCGCGATCGAACAGGCT
GCGGGGGACGAGGAAGCTTGCGATGTTGACGACGATTTCCTTGATGCTCT
GGAGCGCGGCATGCCCCCGACGGCTGGGCTTGGGATTGGCATTGACCGCC
TTATCATGCTCTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9765:4962..5875-

>mRNA_Ecto-sp13_S_contig9765.21416.1 ID=mRNA_Ecto-sp13_S_contig9765.21416.1|Name=mRNA_Ecto-sp13_S_contig9765.21416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9765:4962..5875- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGAGCCCGCTCGCGAAGCCCCACCGCACCAAACCCGGATACACGGA
ACGCTTCGAGGTGTTCGTGCAGGGCAGGGAGATGGCCAACGCCTTCAGCG
AGCTCACCGACCCCGTCGACCAGCGCAACCGCTTCGAGCTGCAGGCCGCT
AAGAAGGCTGCGGGGGACGAGGAAGCTTGCGATGTTGACGACGATTTCCT
TGATGCTCTGGAGCGCGGCATGCCCCCGACGGCTGGGCTTGGGATTGGCA
TTGACCGCCTTATCATGCTCTTG
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