mRNA_Ecto-sp13_S_contig97639.21414.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig97639.21414.1
Unique NamemRNA_Ecto-sp13_S_contig97639.21414.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig97639.21414.1 vs. uniprot
Match: D8LH32_ECTSI (Leucine rich repeat tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH32_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.640e-37
Identity = 91/144 (63.19%), Postives = 103/144 (71.53%), Query Frame = 1 
Query:    1 VAALRFFKRRRRAAKSTNPDPPVPPLHGGDSLTYGRVEQHQKRQNGIHSPSPISGDSAGGNVTRGPXXXXXXXXXXXXX---SYARDDAHRHDAWSPAGSQQHAGIVAEKKNGEDDTPIQALFLAPAMGGLSKPRSEGNPKHTR 423
            +AAL FF  RRRAAKST+PDPP PP +G DSL +GR EQH++RQ  +HS SPI   SAGGNVTR PXXXXXXXX XXXX   SYA D+AHR  AW  + SQQH  I AE   GED T IQ+LF AP +G L  P S+G PK TR
Sbjct:  416 LAALGFFLHRRRAAKSTDPDPPAPPSNGLDSLEHGRGEQHRQRQQDLHSSSPIIAGSAGGNVTRCPXXXXXXXXQXXXXXXXSYAHDNAHRRGAWPASASQQHVVIAAETTLGEDGTTIQSLFPAPPVGTLPNPSSKGKPKRTR 559
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BLAST of mRNA_Ecto-sp13_S_contig97639.21414.1 vs. uniprot
Match: A0A6H5JC40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC40_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 3.950e-34
Identity = 78/141 (55.32%), Postives = 84/141 (59.57%), Query Frame = 1 
Query:    1 VAALRFFKRRRRAAKSTNPDPPVPPLHGGDSLTYGRVEQHQKRQNGIHSPSPISGDSAGGNVTRGPXXXXXXXXXXXXXSYARDDAHRHDAWSPAGSQQHAGIVAEKKNGEDDTPIQALFLAPAMGGLSKPRSEGNPKHTR 423
            VA LRFF RRRRAAKST+PDPP PP +GGDSL Y RVEQHQ+RQN IHS SPI GDSAGGN TRGP                   AH+                       DDTPIQ+LFLAPAMG L KP SEGN + TR
Sbjct:   52 VAGLRFFLRRRRAAKSTDPDPPNPPSYGGDSLAYDRVEQHQQRQNDIHSSSPIIGDSAGGNDTRGPPPP----------------AHK-----------------------DDTPIQSLFLAPAMGALLKPSSEGNSERTR 153
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BLAST of mRNA_Ecto-sp13_S_contig97639.21414.1 vs. uniprot
Match: D7G7X9_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X9_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.340e-33
Identity = 87/141 (61.70%), Postives = 92/141 (65.25%), Query Frame = 1 
Query:    1 VAALRFFKRRRRAAKSTNPDPPVPPLHGGDSLTYGRVEQHQKRQNGIHSPSPISGDSAGGNVTRGPXXXXXXXXXXXXXSYARDDAHRHDAWSPAGSQQHAGIVAEKKNGEDDTPIQALFLAPAMGGLSKPRSEGNPKHTR 423
            VAAL FF RRRRAAKST+PDPP P  +G DSL YGRVEQHQ+RQN IHS SPI GDS GGNVTRG  XXXXXXXXXXXX                         AEK  G DDTP+Q+L  APAMG L KP SEG  K TR
Sbjct:  690 VAALGFFLRRRRAAKSTDPDPPAPASYGADSLEYGRVEQHQQRQNDIHSSSPIMGDSTGGNVTRGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEKTFGGDDTPVQSLSTAPAMGALPKPSSEGKSKSTR 830
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BLAST of mRNA_Ecto-sp13_S_contig97639.21414.1 vs. uniprot
Match: D7FLJ2_ECTSI (TKL family protein kinase protein kinase/ putative CTR1-like protein kinase/ leucine rich repeat pr n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ2_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 4.820e-24
Identity = 79/142 (55.63%), Postives = 85/142 (59.86%), Query Frame = 1 
Query:    1 VAALRFFKRRRRAAKSTNPDPPVPPLHGGDSLTYGRVEQHQKRQNGIHSPSPISGDSAGGNVTRGPXXXXXXXXXXXXXSYARDDAHRHDAWSPAGSQQHAGIVAEKKNGEDDTPI-QALFLAPAMGGLSKPRSEGNPKHTR 423
            +AAL F  R RRAAKST+PDPP  P  GGDSL  G+ EQHQ+RQN  HS                 XXXXXXXXXXXXX      AHR  AWSPA SQQ+A I AE   GED TPI Q+LF A   G L  P SEG  K TR
Sbjct:  455 LAALGFCLRCRRAAKSTDPDPPAAPSDGGDSLECGQGEQHQQRQNDTHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHRRGAWSPAASQQYAVIAAETTLGEDGTPIRQSLFPATPTGALPNPSSEGKSKRTR 596
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BLAST of mRNA_Ecto-sp13_S_contig97639.21414.1 vs. uniprot
Match: D7FRQ5_ECTSI (Similar to CG1848-PA, isoform A/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ5_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.130e-18
Identity = 73/155 (47.10%), Postives = 85/155 (54.84%), Query Frame = 1 
Query:    1 VAALRFFKRRRRAAKSTNPDPPVPPLHGGDSLTYGRVEQHQKRQNGIHSPSPISGDSAGGNVTRGPXXXXXXXXXXXXXSYARDDAHRHDAWS-----------------PAGSQQHAGIVAEKKNGEDDTPIQALFLAPAMGGLSKPRSEGNPK 414
            +AAL FF RRRR AKST PDP  P  + G+SL +G  EQHQ+RQ  +HS                 XXXXXXXXXXXXX  A D A +                      PA SQQHA +VAE   GED TPIQ+LF AP +G L  P+SE NP+
Sbjct:  242 LAALGFFLRRRRVAKSTGPDPSAPRYYAGESLKHGLGEQHQQRQQDMHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAHDGADQRXXXXXXXXXXXXXXXXXXXXXPAASQQHAAVVAETTFGEDCTPIQSLFPAPPVGAL--PKSEENPR 394
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig97639.21414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LH32_ECTSI1.640e-3763.19Leucine rich repeat tyrosine kinase n=1 Tax=Ectoca... [more]
A0A6H5JC40_9PHAE3.950e-3455.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7X9_ECTSI1.340e-3361.70Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FLJ2_ECTSI4.820e-2455.63TKL family protein kinase protein kinase/ putative... [more]
D7FRQ5_ECTSI2.130e-1847.10Similar to CG1848-PA, isoform A/ leucine rich repe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig97639contigEcto-sp13_S_contig97639:50..474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score137.5
Seed ortholog evalue4.8e-30
Seed eggNOG ortholog2880.D7G7X9
Preferred nameRIPK4
Model size427
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K14767,ko:K16175,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04390,ko04391,ko04530,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05165,ko05169,ko05203,map04064,map04210,map04217,map04390,map04391,map04530,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05165,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG0515@1,COG4886@1,KOG0192@2759,KOG0619@2759
Ec32 ortholog descriptionLeucine-rich repeat, typical subtype
Ec32 orthologEc-02_004680.2
EC2.7.11.1
Cds size423
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464240.4471393-CDS-Ecto-sp13_S_contig97639:49..4721681464240.4471393-CDS-Ecto-sp13_S_contig97639:49..472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig97639 50..472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig97639.21414.1prot_Ecto-sp13_S_contig97639.21414.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig97639 50..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig97639.21414.1

>prot_Ecto-sp13_S_contig97639.21414.1 ID=prot_Ecto-sp13_S_contig97639.21414.1|Name=mRNA_Ecto-sp13_S_contig97639.21414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
VAALRFFKRRRRAAKSTNPDPPVPPLHGGDSLTYGRVEQHQKRQNGIHSP
SPISGDSAGGNVTRGPPPPAQQNFPPPPPSYARDDAHRHDAWSPAGSQQH
AGIVAEKKNGEDDTPIQALFLAPAMGGLSKPRSEGNPKHTR
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mRNA from alignment at Ecto-sp13_S_contig97639:50..474+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig97639.21414.1 ID=mRNA_Ecto-sp13_S_contig97639.21414.1|Name=mRNA_Ecto-sp13_S_contig97639.21414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=425bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97639:50..474+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTAGCAGCACTGAGGTTCTTCAAACGTCGTCGACGGGCCGCGAAGAGCAC
GAACCCCGACCCCCCGGTCCCTCCTTTACACGGTGGGGACAGCCTGACGT
ACGGCCGGGTTGAACAGCATCAAAAACGGCAGAATGGCATCCACTCCCCT
TCGCCGATCAGCGGTGACTCTGCTGGGGGCAACGTTACCCGCGGTCCGCC
GCCTCCTGCCCAGCAAAACTTCCCGCCACCGCCCCCATCGTATGCACGTG
ACGATGCACACCGGCACGATGCTTGGTCACCCGCCGGCAGTCAACAGCAC
GCGGGTATCGTCGCCGAGAAAAAAAACGGCGAAGATGACACGCCTATCCA
AGCATTGTTCCTAGCGCCGGCCATGGGCGGCCTGTCGAAGCCCAGGTCCG
AGGGAAACCCCAAGCACACACGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig97639:50..474+

>mRNA_Ecto-sp13_S_contig97639.21414.1 ID=mRNA_Ecto-sp13_S_contig97639.21414.1|Name=mRNA_Ecto-sp13_S_contig97639.21414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97639:50..474+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTAGCAGCACTGAGGTTCTTCAAACGTCGTCGACGGGCCGCGAAGAGCAC
GAACCCCGACCCCCCGGTCCCTCCTTTACACGGTGGGGACAGCCTGACGT
ACGGCCGGGTTGAACAGCATCAAAAACGGCAGAATGGCATCCACTCCCCT
TCGCCGATCAGCGGTGACTCTGCTGGGGGCAACGTTACCCGCGGTCCGCC
GCCTCCTGCCCAGCAAAACTTCCCGCCACCGCCCCCATCGTATGCACGTG
ACGATGCACACCGGCACGATGCTTGGTCACCCGCCGGCAGTCAACAGCAC
GCGGGTATCGTCGCCGAGAAAAAAAACGGCGAAGATGACACGCCTATCCA
AGCATTGTTCCTAGCGCCGGCCATGGGCGGCCTGTCGAAGCCCAGGTCCG
AGGGAAACCCCAAGCACACACGC
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