mRNA_Ecto-sp13_S_contig9760.21412.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9760.21412.1 vs. uniprot
Match: D8LKG9_ECTSI (CxC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG9_ECTSI) HSP 1 Score: 340 bits (872), Expect = 7.410e-107 Identity = 169/172 (98.26%), Postives = 170/172 (98.84%), Query Frame = 3
Query: 852 APARSVGSSTTFSVCTALNQLRVSVVKANNVFMCSQGECRKVEQLRAAAGRQGDTNSALADRCQHADVVRKAEVSSQSIPTATACLNGDGEFENALASVPPGTFNEKMVRAMQQRYARAKEEGVPVLVRLTETVWFAVRDGVTFQRNVIGGWGHVKTRSDTTDGSGHMFQCK 1367
APARSVGSSTTFSVCTALNQLRVSVVKANNVFMCS+GECRKVEQLRAAAGRQGDTNSALADRCQHADVVRKAEVSSQSIPTATACLNGDGEFENALASVPPGTFNEKMVRAMQQRYARAKEEGVPVLVRL ET WFAVRDGVTFQRNVIGGWGHVKTRSDTTDGSGHMFQCK
Sbjct: 288 APARSVGSSTTFSVCTALNQLRVSVVKANNVFMCSRGECRKVEQLRAAAGRQGDTNSALADRCQHADVVRKAEVSSQSIPTATACLNGDGEFENALASVPPGTFNEKMVRAMQQRYARAKEEGVPVLVRLAETAWFAVRDGVTFQRNVIGGWGHVKTRSDTTDGSGHMFQCK 459
BLAST of mRNA_Ecto-sp13_S_contig9760.21412.1 vs. uniprot
Match: A0A6H5KVV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV8_9PHAE) HSP 1 Score: 178 bits (452), Expect = 3.370e-49 Identity = 104/229 (45.41%), Postives = 137/229 (59.83%), Query Frame = 3
Query: 684 KRNRRTGPQGTLQRSAQAKNRAVPTTIFQLPTPTSSAPTTAXXXXLPTPGSATGGGAPARSVGSSTTFSVCTALNQLRVSVVKANNVFMCSQGECRKVEQLRAAAGRQGDTNSALADRCQHADVVRKAEVSSQSIPTATACLNGDGEFENALASVPPGTFNEKMVRAMQQRYARAKEEGVPVLVRLTETVWFAVRDGVTFQRNVIGGWGHVKTRSDTTDGSGHMFQCKV 1370
K+N R GP L RS QA+ R V T++F+LP+ T + PTTA P P G TT+S CT++ Q RVSVV++N +MCS+ EC+ +E L A A GDT L C HADVV +A+ SS + ATA L EF AL +VP GTFN+ ++A++ R ARA+E G+PVLV+L +T +FAVRDG F RN++GGW HVK G +CKV
Sbjct: 31 KKNARKGPTSLLDRSTQARTRNVGTSVFELPS-TQTTPTTADSTPTPAPTPREG-----------TTYSTCTSVGQNRVSVVESNGRYMCSRPECKTIETLSAKAAAGGDTECVLRRHCAHADVVVQAKASSVPMAGATALLPSAEEFLRALDAVPTGTFNKHTMQAIRARVARAEELGIPVLVKLGDTKFFAVRDGPNFNRNIVGGWAHVKCEES---GGKTTLRCKV 244
BLAST of mRNA_Ecto-sp13_S_contig9760.21412.1 vs. uniprot
Match: A0A6H5L6Z2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z2_9PHAE) HSP 1 Score: 166 bits (420), Expect = 4.890e-41 Identity = 102/225 (45.33%), Postives = 137/225 (60.89%), Query Frame = 3
Query: 693 RRTGPQGTLQRSAQAKNRAVPTTIFQLPTPTSSAPTTAXXXXLPTPGSATGGGAPARSVGSSTTFSVCTALNQLRVSVVKANNVFMCSQGECRKVEQLRAAAGRQGDTNSALADRCQHADVVRKAEVSSQSIPTATACLNGDGEFENALASVPPGTFNEKMVRAMQQRYARAKEEGVPVLVRLTETVWFAVRDGVTFQRNVIGGWGHVKTRSDTTDGSGHMFQCK 1367
+R+ + RS A+NR T +++ PT TSS PT A PTP S G TT+SVCT+ Q RV+V+KA F+CS+ +CR++E L +AA GDT SAL RC HA+VV +AE +S +P A A L+ G+FE+AL VP GTFN++ V +M+ R +A +EG+P+LVR+ T +FAVRDG F R VIG WGHVK +FQCK
Sbjct: 244 KRSKAVSVVDRSRLAQNRQESTDVYEFPTTTSS-PTAATTAASPTPPSGPG-----------TTYSVCTSNGQNRVAVIKAGARFLCSRPDCRRIEGLSSAA--TGDTASALPSRCAHAEVVIEAEKTSMPMPKADALLSA-GDFESALDKVPAGTFNQRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKY----DQRGSKVFQCK 449
BLAST of mRNA_Ecto-sp13_S_contig9760.21412.1 vs. uniprot
Match: A0A6H5L8M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M0_9PHAE) HSP 1 Score: 164 bits (416), Expect = 5.570e-41 Identity = 101/225 (44.89%), Postives = 138/225 (61.33%), Query Frame = 3
Query: 693 RRTGPQGTLQRSAQAKNRAVPTTIFQLPTPTSSAPTTAXXXXLPTPGSATGGGAPARSVGSSTTFSVCTALNQLRVSVVKANNVFMCSQGECRKVEQLRAAAGRQGDTNSALADRCQHADVVRKAEVSSQSIPTATACLNGDGEFENALASVPPGTFNEKMVRAMQQRYARAKEEGVPVLVRLTETVWFAVRDGVTFQRNVIGGWGHVKTRSDTTDGSGHMFQCK 1367
+R+ + RS A+NR T +++ PT TSS PT A PTP S G TT+SVCT+ +Q RV+V+KA + F+CS+ +CR++E L +AA GDT SAL RC HA+VV +AE +S +P A A L+ G+F++AL VP GTFN + V +M+ R +A +EG+P+LVR+ T +FAVRDG F R VIG WGHVK +FQCK
Sbjct: 328 KRSKTVSVVDRSRLAQNRQESTDVYEFPTTTSS-PTAATTAASPTPPSGPG-----------TTYSVCTSNSQNRVAVIKAGDRFLCSRPDCRRIEGLSSAA--TGDTASALPSRCAHAEVVIEAERTSMPMPKADALLSA-GDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKY----DQRGSKVFQCK 533
BLAST of mRNA_Ecto-sp13_S_contig9760.21412.1 vs. uniprot
Match: A0A6H5KZ13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ13_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 4.470e-15 Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 3
Query: 1086 IPTATACLNGDGEFENALASVPPGTFNEKMVRAMQQRYARAKEEGVPVLVRLTETVWFAVRDGVTFQRNVIGGWGHVKTRSDTTDGSGHMFQCK 1367
+P A A L+ G+F++AL VP GTFN + V +M+ R +A +EG+P+LVR+ T +FAVRDG F R VIG WGHVK +FQCK
Sbjct: 3 MPKADALLSA-GDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKY----DQRGSKVFQCK 91 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9760.21412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9760.21412.1 >prot_Ecto-sp13_S_contig9760.21412.1 ID=prot_Ecto-sp13_S_contig9760.21412.1|Name=mRNA_Ecto-sp13_S_contig9760.21412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=216bp MGLTASAGYAASRRGGAGSWGVPRGGVAGVSANGVATAPAESTRRGTAAAback to top mRNA from alignment at Ecto-sp13_S_contig9760:1900..5879- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9760.21412.1 ID=mRNA_Ecto-sp13_S_contig9760.21412.1|Name=mRNA_Ecto-sp13_S_contig9760.21412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3980bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9760:1900..5879- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9760:1900..5879- >mRNA_Ecto-sp13_S_contig9760.21412.1 ID=mRNA_Ecto-sp13_S_contig9760.21412.1|Name=mRNA_Ecto-sp13_S_contig9760.21412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9760:1900..5879- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |