prot_Ecto-sp13_S_contig12587.2139.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12587.2139.1
Unique Nameprot_Ecto-sp13_S_contig12587.2139.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length49
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12587.2139.1 vs. uniprot
Match: A0A6H5K8L6_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8L6_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 6.440e-5
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 0 
Query:   27 HKKSCDLCVARKVKCSGATP 46
            HKKSCDLCVARKVKCSGATP
Sbjct:   25 HKKSCDLCVARKVKCSGATP 44
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12587.2139.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8L6_9PHAE6.440e-5100.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 25..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12587contigEcto-sp13_S_contig12587:3637..3896 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12587.2139.1mRNA_Ecto-sp13_S_contig12587.2139.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12587 3637..3896 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12587.2139.1 ID=prot_Ecto-sp13_S_contig12587.2139.1|Name=mRNA_Ecto-sp13_S_contig12587.2139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
YPLPALRPPPSLRALTPTSLATGANNHKKSCDLCVARKVKCSGATPCR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf