mRNA_Ecto-sp13_S_contig12587.2139.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12587.2139.1
Unique NamemRNA_Ecto-sp13_S_contig12587.2139.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12587.2139.1 vs. uniprot
Match: A0A6H5K8L6_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8L6_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 6.440e-5
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 1 
Query:   79 HKKSCDLCVARKVKCSGATP 138
            HKKSCDLCVARKVKCSGATP
Sbjct:   25 HKKSCDLCVARKVKCSGATP 44
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12587.2139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8L6_9PHAE6.440e-5100.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12587contigEcto-sp13_S_contig12587:3637..3896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size149
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462671.3774443-CDS-Ecto-sp13_S_contig12587:3636..37061681462671.3774443-CDS-Ecto-sp13_S_contig12587:3636..3706Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12587 3637..3706 -
1681462671.3899918-CDS-Ecto-sp13_S_contig12587:3819..38961681462671.3899918-CDS-Ecto-sp13_S_contig12587:3819..3896Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12587 3820..3896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12587.2139.1prot_Ecto-sp13_S_contig12587.2139.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12587 3637..3896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12587.2139.1

>prot_Ecto-sp13_S_contig12587.2139.1 ID=prot_Ecto-sp13_S_contig12587.2139.1|Name=mRNA_Ecto-sp13_S_contig12587.2139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
YPLPALRPPPSLRALTPTSLATGANNHKKSCDLCVARKVKCSGATPCR*
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mRNA from alignment at Ecto-sp13_S_contig12587:3637..3896-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12587.2139.1 ID=mRNA_Ecto-sp13_S_contig12587.2139.1|Name=mRNA_Ecto-sp13_S_contig12587.2139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=260bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12587:3637..3896- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCCATTGCCCGCTTTACGACCCCCTCCATCGCTCCGAGCACTTACTCC
CACCAGCCTCGCTACTGGCGCTAATAAGTGAGTGGAGATCAAACTTTTTT
CCTTCGGTTGTGGGCGCTCATGCATGCTGCTGGAAGCAAGCGGCTGGAGA
TGACCACCAACATTTCCGCCGCCACCGCTCCTCCTCCCAGTCACAAGAAG
AGCTGCGACCTGTGCGTCGCTCGCAAAGTGAAGTGCTCTGGGGCTACTCC
GTGCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12587:3637..3896-

>mRNA_Ecto-sp13_S_contig12587.2139.1 ID=mRNA_Ecto-sp13_S_contig12587.2139.1|Name=mRNA_Ecto-sp13_S_contig12587.2139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12587:3637..3896- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCCATTGCCCGCTTTACGACCCCCTCCATCGCTCCGAGCACTTACTCC
CACCAGCCTCGCTACTGGCGCTAATAATCACAAGAAGAGCTGCGACCTGT
GCGTCGCTCGCAAAGTGAAGTGCTCTGGGGCTACTCCGTGCAGGTGA
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