mRNA_Ecto-sp13_S_contig9734.21371.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9734.21371.1
Unique NamemRNA_Ecto-sp13_S_contig9734.21371.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9734.21371.1 vs. uniprot
Match: A0A6H5JIB4_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIB4_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.090e-58
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1
Query:   28 DTADGNVAYAACDLVGAFAKVIGPSFAESFDVFLPNILKYTKGSRPASDRSMAVGCFAEVFESIGPACAKYIGQVLPIIKLSLVDSSAGVRRNAAFCAGTLAQ 336
            DTADGNVAYAACDLVGAFAKVIGPSFAESFDVFLPNILKYTKGSRPASDRSMAVGCFAEVFESIGPACAKY+GQVLPIIKLSLVDSSAGVRRNAAFCAGTLAQ
Sbjct:  833 DTADGNVAYAACDLVGAFAKVIGPSFAESFDVFLPNILKYTKGSRPASDRSMAVGCFAEVFESIGPACAKYVGQVLPIIKLSLVDSSAGVRRNAAFCAGTLAQ 935          
BLAST of mRNA_Ecto-sp13_S_contig9734.21371.1 vs. uniprot
Match: A0A7S3M799_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M799_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.700e-27
Identity = 58/104 (55.77%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   25 EDTADGNVAYAACDLVGAFAKVIGPSFAESFDVFLPNILKYTKGSRPASDRSMAVGCFAEVFESIGPACAKYIGQVLPIIKLSLVDSSAGVRRNAAFCAGTLAQ 336
            ED  D  V  A  DL+G  AKV+GP+F   FD F   +LK+ K SR  +DRSMA+GC+AEV   IGPA  KY   +LP+I+L L DS  GVRRNAAFC GTL Q
Sbjct:  140 EDDHDNLVMDAVTDLIGELAKVLGPNFVAYFDEFQKLLLKFAKPSRAHTDRSMAIGCYAEVIAEIGPASLKYAELLLPMIQLGLADSMEGVRRNAAFCVGTLVQ 243          
BLAST of mRNA_Ecto-sp13_S_contig9734.21371.1 vs. uniprot
Match: B7GC72_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GC72_PHATC)

HSP 1 Score: 90.5 bits (223), Expect = 7.340e-19
Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   25 EDTADGNVAYAACDLVGAFAKVIGPSFAESFDVFLPNILKYTKGSRPASDRSMAVGCFAEVFESIGPACAKYIGQV-LPIIKLSLVDSSAGVRRNAAFCAG 324
            +D  DG +  A CDLVG F +V+G  FA+    FLP I +Y K SRPASDRSMAVGC +E+ + +  +   Y   V LP I   L D    V+RNAAFCAG
Sbjct:  529 DDDHDG-IMQAVCDLVGGFGRVLGSQFAQYLGQFLPAICEYGKSSRPASDRSMAVGCLSEIAQELESSVLDYWPTVFLPAILSGLADEDDNVKRNAAFCAG 628          
BLAST of mRNA_Ecto-sp13_S_contig9734.21371.1 vs. uniprot
Match: A0A7S2YBI1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YBI1_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.510e-18
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   55 AACDLVGAFAKVIGPSFAESFDVFLPNILKYTKGSRPASDRSMAVGCFAEVFESIGPACAKYIGQV-LPIIKLSLVDSSAGVRRNAAFCAG 324
            AACDLVG + +V+G  FA+    FLP I +Y K SRPASDRSMAVGC +EV + +  A +++   V LP I   L D    V+RN+AFCAG
Sbjct:  437 AACDLVGGYCRVMGQHFAQYLPQFLPAICEYAKPSRPASDRSMAVGCLSEVAQELEGAISEHWQSVFLPAILNGLADEDVNVKRNSAFCAG 527          
BLAST of mRNA_Ecto-sp13_S_contig9734.21371.1 vs. uniprot
Match: A0A7S4MQ84_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MQ84_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.250e-17
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   55 AACDLVGAFAKVIGPSFAESFDVFLPNILKYTKGSRPASDRSMAVGCFAEVFESIGPACAKYIGQV-LPIIKLSLVDSSAGVRRNAAFCAG 324
            + CDLVG+FA+V+GP F +    FLP +  Y K SRP SDRSMA+GC  E+ + +G     +   V LP I   L D    V+RN+AFCAG
Sbjct:  772 SVCDLVGSFARVMGPHFVQYLPQFLPPVCAYAKSSRPPSDRSMAMGCLGELGQELGDGIRDHWESVFLPAILAGLADPDDNVKRNSAFCAG 862          
BLAST of mRNA_Ecto-sp13_S_contig9734.21371.1 vs. uniprot
Match: A0A448YYP5_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYP5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.420e-15
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   46 VAYAACDLVGAFAKVIGPSFAESFDVFLPNILKYTKGSRPASDRSMAVGCFAEVFESIGPACAKYIGQV-LPIIKLSLVDSSAGVRRNAAFCAG 324
            V  AACDLVG F +V+G  F +    FLP + +Y K SRPA DRSMA+G  +EV + +     ++   V LP     L D +  V+RNAAFCAG
Sbjct:  843 VTQAACDLVGGFCRVMGAQFGQYLPQFLPAVCEYAKSSRPARDRSMAIGWLSEVAQELEGTIFEHWKTVFLPATLAGLGDPAEEVKRNAAFCAG 936          
BLAST of mRNA_Ecto-sp13_S_contig9734.21371.1 vs. uniprot
Match: A0A5C3LAV8_9AGAR (Importin beta-4 subunit n=1 Tax=Coprinopsis marcescibilis TaxID=230819 RepID=A0A5C3LAV8_9AGAR)

HSP 1 Score: 75.9 bits (185), Expect = 1.010e-13
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   37 DGNVAYAACDLVGAFAKVIGPSFAESFDVFLPNILKYTKGSRPASDRSMAVGCFAEVFESIGPACAKYIGQVLPIIKLSLVDSSAGVRRNAAFCAGTLAQ 336
            D  +  +A DLV + A V+GP+F  +F+ F P I KY + +R  SDRS A+GCFAE+   I      + G +L +   +L D  A V  NAAF  G L +
Sbjct:  833 DSVLISSAGDLVASLANVLGPTFVPAFEKFYPLIAKYYRKNRSLSDRSSAIGCFAEIISGIKGGVTNHTGPLLELFLKALADEEAEVLSNAAFAIGLLVE 932          
BLAST of mRNA_Ecto-sp13_S_contig9734.21371.1 vs. uniprot
Match: D8R1R8_SELML (Importin N-terminal domain-containing protein n=6 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R1R8_SELML)

HSP 1 Score: 75.5 bits (184), Expect = 1.380e-13
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = 1
Query:    4 DDEEXXXEDTADGNVAYAACDLVGAFAKVIGPSFAESFDVFLPNILKYTKGSRPASDRSMAVGCFAEVFESIGPACAKYIGQVLPIIKLSLVDSSAGVRRNAAFCAGTL 330
            DDE+    DT D  +  A  D++ A A  +GPSF   F      ++K++K SR A+DR+M +GC AE+  +IG     YI +V+P+    L  + A  RRNAA+C G L
Sbjct:  783 DDEDDGQLDT-DQALMDAVADVLPAMATCMGPSFEPIFSQHFEALMKFSKESRAANDRTMVIGCVAEIARAIGSQIIPYIPRVMPVALQELRSAEAANRRNAAYCVGQL 890          
BLAST of mRNA_Ecto-sp13_S_contig9734.21371.1 vs. uniprot
Match: A0A177VS71_9BASI (Importin N-terminal domain-containing protein n=4 Tax=Tilletia TaxID=13289 RepID=A0A177VS71_9BASI)

HSP 1 Score: 72.0 bits (175), Expect = 2.270e-12
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 1
Query:   55 AACDLVGAFAKVIGPSFAESFDVFLPNILKYTKGSRPASDRSMAVGCFAEVFESIGPACAKYIGQVLPIIKLSLVDSSAGVRRNAAFCAGTL 330
            ++ DL+G  A  +G  FA  F  FLP ++KY    R  S+RS A+G FAE+   +G A   +  Q+L I+  ++ D +A VR+NAAF +G L
Sbjct:  843 SSVDLLGGLAGALGADFAPLFSKFLPLLVKYYAPGRSDSERSTAIGGFAEIILGLGGAVTPFTEQILSILSRAITDDAAQVRQNAAFASGLL 934          
BLAST of mRNA_Ecto-sp13_S_contig9734.21371.1 vs. uniprot
Match: A8N951_COPC7 (Importin beta-4 subunit n=1 Tax=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) TaxID=240176 RepID=A8N951_COPC7)

HSP 1 Score: 68.9 bits (167), Expect = 2.730e-11
Identity = 40/111 (36.04%), Postives = 57/111 (51.35%), Query Frame = 1
Query:    4 DDEEXXXEDTADGNVAYAACDLVGAFAKVIGPSFAESFDVFLPNILKYTKGSRPASDRSMAVGCFAEVFESIGPACAKYIGQVLPIIKLSLVDSSAGVRRNAAFCAGTLAQ 336
            DDE    +   D  +  +A DLV A A  +G  F  +F+ F P I KY + +R  SDRS A+GCFAE+   I     ++   +L + + +L D    V  NAAF  G L +
Sbjct:  798 DDEAPEYQAEYDSVLISSAGDLVAALANALGVEFVPAFNTFYPLIAKYYRKNRSLSDRSSAIGCFAEIISGIKNGVTEHTAALLELFQKALNDEEPEVLSNAAFAIGLLVE 908          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9734.21371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JIB4_9PHAE1.090e-5899.03Importin N-terminal domain-containing protein n=2 ... [more]
A0A7S3M799_9STRA6.700e-2755.77Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
B7GC72_PHATC7.340e-1949.50Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2YBI1_9STRA2.510e-1851.65Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S4MQ84_9STRA4.250e-1747.25Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A448YYP5_9STRA8.420e-1545.74Importin N-terminal domain-containing protein n=1 ... [more]
A0A5C3LAV8_9AGAR1.010e-1340.00Importin beta-4 subunit n=1 Tax=Coprinopsis marces... [more]
D8R1R8_SELML1.380e-1339.45Importin N-terminal domain-containing protein n=6 ... [more]
A0A177VS71_9BASI2.270e-1240.22Importin N-terminal domain-containing protein n=4 ... [more]
A8N951_COPC72.730e-1136.04Importin beta-4 subunit n=1 Tax=Coprinopsis cinere... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9734contigEcto-sp13_S_contig9734:4501..5921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score164.9
Seed ortholog evalue2.2e-38
Seed eggNOG ortholog2880.D7FQF7
Model size336
KEGG koko:K20221
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
GOsGO:0000060,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033036,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0140104,GO:0140142
Exons3
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
Cds size336
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464236.8440409-CDS-Ecto-sp13_S_contig9734:4500..45871681464236.8440409-CDS-Ecto-sp13_S_contig9734:4500..4587Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9734 4501..4587 +
1681464236.862136-CDS-Ecto-sp13_S_contig9734:5247..53841681464236.862136-CDS-Ecto-sp13_S_contig9734:5247..5384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9734 5248..5384 +
1681464236.8761196-CDS-Ecto-sp13_S_contig9734:5809..59211681464236.8761196-CDS-Ecto-sp13_S_contig9734:5809..5921Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9734 5810..5921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9734.21371.1prot_Ecto-sp13_S_contig9734.21371.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9734 4501..5921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9734.21371.1

>prot_Ecto-sp13_S_contig9734.21371.1 ID=prot_Ecto-sp13_S_contig9734.21371.1|Name=mRNA_Ecto-sp13_S_contig9734.21371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
DDDEEDDDEDTADGNVAYAACDLVGAFAKVIGPSFAESFDVFLPNILKYT
KGSRPASDRSMAVGCFAEVFESIGPACAKYIGQVLPIIKLSLVDSSAGVR
RNAAFCAGTLAQ
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mRNA from alignment at Ecto-sp13_S_contig9734:4501..5921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9734.21371.1 ID=mRNA_Ecto-sp13_S_contig9734.21371.1|Name=mRNA_Ecto-sp13_S_contig9734.21371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1421bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9734:4501..5921+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGATGACGAAGAGGACGACGACGAGGACACCGCGGACGGCAACGTTGC CTACGCAGCTTGCGACCTCGTCGGAGCGTTCGCGAAGGTCGGTCGGTCGG TCGATTGATGACGTGACGTCATCACAGGGGGGATGATACGCCTTGTTTCT GAGTGTAGTGCAAGTTCTGCTAGATGCACAACATTGTATTGCAGGCTTTC GTTCTCGACCACCTAGTTGGAGTGATGTTGGTGTATGGGGAAATTTGGTC CCCAACACGGTGAACAGTTACATGGTGGCGCCGTGCACGTCGACGTGTTC GGGACGTTTGCCAAGTGTTTTTCAAGGGCGATTTTTGCTGAAAAGTGTTA TATGAGTGATTCTAGGCTTTCCAAGAACTCGATGACTGTTTAGTATTTTC TGCTGCTGGAAATATAACGCTGTTGTGGTGCTTTCTCACCAGCAGTCCAT GTGTTGAGGAATCGTCTTGAAAATATCGATTGGGATATCCCCCCCCCTTC CCCCCGGTATCTGTACGCTTGTCTTGCGCCTGTGGGTGCCATGTCTGTCT CTTGCCCCCAAATACCAACGCACGATTACTTTCCCTGCAGCCTAGATGTG CTGCCGTGACTTCATTGATGATGGCTGACCCCCGCCACTTCTCCGAGTGC ATCACACATCCCATGCCCTCGAGACCCTCTGCCTCTAGTGGGTTTGCTTA TCATAAATCATATTCCTTGCACGGACCCTGCCACACCCTCCAAAAAGGTG ATCGGCCCATCGTTCGCCGAGTCGTTCGATGTCTTCCTGCCAAATATTCT CAAGTACACCAAGGGGTCGAGACCGGCCTCGGACAGGTCGATGGCGGTGG GCTGCTTCGCTGAAGTTTTCGAGTCCATTGGCCCGTGAGTATTGTACTAA TGTTGTTACTGCGCCAATGCCGAACTGTTTGTGTAGCTCAGTGCTGCGTT ATGTAGCTCTTTGGTGTATGGCCGATTGAGCGGGCCTTTTGGGCCTCAGG CGTGCGTGGGCGAGTGAAAGTTGCTGGACAGGATAATAGGGGCAGAGGTT GTGAAAATTATTCATGAAAAAGGTACAGATGGATAGTTCTCTTGATGAGA GGCGAGAGTTACAAAGGTGTAGCGTGGGCCAACATTTATACGGCCAGTTA GTCCCGTACTGCTGTATTCGTGAAAATCGGACGCGAGTTGTCTCCCCAAA GCATCCCTCCTCCTCTGAACTTTTCACCCTCCGCGCACCCGTTCCACTCG ATCCGACACCGGTATGGCCTATGTCCTTTGATGGCAACAAAACAATTTCA ACTCTGAAGAGCTTGTGCTAAATACATCGGTCAAGTGCTACCGATAATCA AGCTTAGCTTGGTGGACTCCAGCGCGGGGGTGCGACGGAACGCCGCATTC TGCGCAGGGACGTTGGCTCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9734:4501..5921+

>mRNA_Ecto-sp13_S_contig9734.21371.1 ID=mRNA_Ecto-sp13_S_contig9734.21371.1|Name=mRNA_Ecto-sp13_S_contig9734.21371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9734:4501..5921+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGATGACGAAGAGGACGACGACGAGGACACCGCGGACGGCAACGTTGC
CTACGCAGCTTGCGACCTCGTCGGAGCGTTCGCGAAGGTGATCGGCCCAT
CGTTCGCCGAGTCGTTCGATGTCTTCCTGCCAAATATTCTCAAGTACACC
AAGGGGTCGAGACCGGCCTCGGACAGGTCGATGGCGGTGGGCTGCTTCGC
TGAAGTTTTCGAGTCCATTGGCCCAGCTTGTGCTAAATACATCGGTCAAG
TGCTACCGATAATCAAGCTTAGCTTGGTGGACTCCAGCGCGGGGGTGCGA
CGGAACGCCGCATTCTGCGCAGGGACGTTGGCTCAG
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