prot_Ecto-sp13_S_contig12585.2136.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12585.2136.1
Unique Nameprot_Ecto-sp13_S_contig12585.2136.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length382
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12585.2136.1 vs. uniprot
Match: S5MQA6_9ABAC (Iap3 n=1 Tax=Hemileuca sp. nucleopolyhedrovirus TaxID=1367203 RepID=S5MQA6_9ABAC)

HSP 1 Score: 53.1 bits (126), Expect = 9.770e-5
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 0 
Query:  332 RCVVCYDRVRTVYFQTCHHLVVCGQCSDELSACPICNTIVRKR 374
            RCV+C D  R + FQ CHH+V C  CSD ++ C IC +++ +R
Sbjct:  127 RCVICLDNERQIMFQPCHHVVCCRTCSDLITDCVICRSVIIER 169
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12585.2136.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
S5MQA6_9ABAC9.770e-546.51Iap3 n=1 Tax=Hemileuca sp. nucleopolyhedrovirus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 331..372
e-value: 8.0E-10
score: 38.4
NoneNo IPR availablePANTHERPTHR10044:SF170coord: 198..373
NoneNo IPR availablePANTHERPTHR10044INHIBITOR OF APOPTOSIScoord: 198..373
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 327..373
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 308..379
e-value: 3.9E-13
score: 50.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 333..368
score: 9.981

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12585contigEcto-sp13_S_contig12585:2272..4636 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12585.2136.1mRNA_Ecto-sp13_S_contig12585.2136.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12585 1552..4902 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12585.2136.1 ID=prot_Ecto-sp13_S_contig12585.2136.1|Name=mRNA_Ecto-sp13_S_contig12585.2136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=382bp
MNPGKGTSPESGQTNNATLGVERNISGLPKKDSNSAAATATTESENTSAD
HRLRQRKRKWGFATETEISPPEPASAAPGAGAVAASPATATADVLPPIDH
GSAAQQLKIIIEHTEALCRRTSTGMREALFPQLHLLYFQQAGHARSMVPP
GRPTSCQPGSGAAAGPNPLTVNLAKAVAARIGSGFDGAVAAGGSEGAGAL
AGAGVSDATGGVAPASVSTATAAARASAAATAPAPAAPDATAAAAEHSSV
PASSPAPTRAAPSAASHSTHPLPADSARAESLDGLEEIRKERDARSAAEE
ALVAETRRREEVAQALAAEKGKREEAVEDRVRCVVCYDRVRTVYFQTCHH
LVVCGQCSDELSACPICNTIVRKRSKNVIIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING