mRNA_Ecto-sp13_S_contig12585.2136.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12585.2136.1
Unique NamemRNA_Ecto-sp13_S_contig12585.2136.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12585.2136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12585contigEcto-sp13_S_contig12585:1552..4902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1571
Hectar predicted targeting categoryother localisation
Exons6
Cds size1146
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12585.2136.1prot_Ecto-sp13_S_contig12585.2136.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12585 2272..4636 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462671.2077901-UTR-Ecto-sp13_S_contig12585:1551..16951681462671.2077901-UTR-Ecto-sp13_S_contig12585:1551..1695Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12585 1552..1695 +
1681462671.2207112-UTR-Ecto-sp13_S_contig12585:2256..22711681462671.2207112-UTR-Ecto-sp13_S_contig12585:2256..2271Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12585 2257..2271 +
1681462671.284711-UTR-Ecto-sp13_S_contig12585:4636..49021681462671.284711-UTR-Ecto-sp13_S_contig12585:4636..4902Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12585 4637..4902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462671.2308547-CDS-Ecto-sp13_S_contig12585:2271..23221681462671.2308547-CDS-Ecto-sp13_S_contig12585:2271..2322Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12585 2272..2322 +
1681462671.2404282-CDS-Ecto-sp13_S_contig12585:2799..28961681462671.2404282-CDS-Ecto-sp13_S_contig12585:2799..2896Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12585 2800..2896 +
1681462671.2509925-CDS-Ecto-sp13_S_contig12585:3163..36431681462671.2509925-CDS-Ecto-sp13_S_contig12585:3163..3643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12585 3164..3643 +
1681462671.2682648-CDS-Ecto-sp13_S_contig12585:3873..41011681462671.2682648-CDS-Ecto-sp13_S_contig12585:3873..4101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12585 3874..4101 +
1681462671.2765756-CDS-Ecto-sp13_S_contig12585:4346..46361681462671.2765756-CDS-Ecto-sp13_S_contig12585:4346..4636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12585 4347..4636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12585.2136.1

>prot_Ecto-sp13_S_contig12585.2136.1 ID=prot_Ecto-sp13_S_contig12585.2136.1|Name=mRNA_Ecto-sp13_S_contig12585.2136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=382bp
MNPGKGTSPESGQTNNATLGVERNISGLPKKDSNSAAATATTESENTSAD
HRLRQRKRKWGFATETEISPPEPASAAPGAGAVAASPATATADVLPPIDH
GSAAQQLKIIIEHTEALCRRTSTGMREALFPQLHLLYFQQAGHARSMVPP
GRPTSCQPGSGAAAGPNPLTVNLAKAVAARIGSGFDGAVAAGGSEGAGAL
AGAGVSDATGGVAPASVSTATAAARASAAATAPAPAAPDATAAAAEHSSV
PASSPAPTRAAPSAASHSTHPLPADSARAESLDGLEEIRKERDARSAAEE
ALVAETRRREEVAQALAAEKGKREEAVEDRVRCVVCYDRVRTVYFQTCHH
LVVCGQCSDELSACPICNTIVRKRSKNVIIS*
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mRNA from alignment at Ecto-sp13_S_contig12585:1552..4902+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12585.2136.1 ID=mRNA_Ecto-sp13_S_contig12585.2136.1|Name=mRNA_Ecto-sp13_S_contig12585.2136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12585:1552..4902+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGCGCCACTAACCCAATCCGCGTATTTTCGCCAGAGACGAGAGAAGG
AAGAGACTTCGAAACAAGCAGCAGCAGCAGCAGCAACAGCGGCTACGACA
GCCTCGCCGGGAAGCTGACACACGGCCGCCGTTAACCGCGGAAGGTAAGG
GGAGGGATGTGTTTTTGTGGCGATGTACTTCTCGGGGAACAGGTAAGTGG
CTCCCAGCTCACTCAACGTGAACATACGCATTCCACCTCACGCGATGCCT
GGTGGCCACGGGCACCCGGACTCACGCACACGCTTTGACACCGGTAGCCT
GTTGTACAACTGCCTTGTCGGGCGTGTTGGGTGGGCCTCGGGTTGCCTTC
CCCGCCTTCTCTCTCTCTGCGGAGCGAGGCAACTGCCTTGTACTCTTTCA
TTGCCTCCCACCTCGGCGTGTGTCGTGCGTCAAAGTGTGCATTCTTACAA
GTTTCCCTAGACCTCGTGTGCAGTGCTGTAGCCCGTCTCACTCTATGTTC
TCTCTCGTAGCGGATTGCGCTGCTGGGGGAGCTATGTTTTTGAGCCAGTC
GCTTTCTCCGATAAGACAGCAATTTTCTGCCTGTATGTCTACAGTTTCCC
CTTCAGCAAACGGCCACAACTCCCCTGTGCATAAAAGAAATTGCCCCCCT
CCCCTCCCTGTGTATGTTGCGCCTTTTGCATCGTATTCATCCTAATTTTG
GGCAGGGCTCCGTTCCGGAGATGAACCCGGGAAAGGGAACTTCTCCCGAG
TCGGGGCAAACGAACAATGCGGTAATTAGATTACAAAAAGCCTGTGAGGC
TGTTCGTTGAATGGCTTACGCTGATGATGTTCCGTGTTTTTGTTGCCTTT
GTTGCGCCTGCGTATGATCAGCGTGTACCTCCCTCGCGTTCGATTTCTGT
GGTAGCTGTTTGAATGGAATGTGTGTGTGTGTGCGGACGCAATGCTCACG
CTTGTCACAGTCGATGCTTTTAGAGTGGAGTCTTTATTGTTCACCCCGCA
CGTAATGCGCTCACGCTTGTCACAGACGGTGCTTTGAGATAGTTCGCTGT
GTTGCTGTGTCTCTTTCCTGTTCCGTATCCGGCCACGGCCTTGGTGTCGA
CCCCTTTCCGACCGCATCCCCATTCAAGTAGATGGTCAGATCCCACCCTT
CCTCCCCATGCTCGCTTGCCGCCCAACCCCCCCCCCCCCCCCCTCCCCCC
CCCCTCCGTCCCCTCGCGTTCTCTCCATTGTTGTCGCCCGACACACAGAC
TCTTGGCGTGGAACGCAATATTTCGGGTTTGCCAAAGAAGGACTCCAACT
CTGCAGCCGCTACCGCGACCACTGAGTCGGAAAACACTTCCGCAGGTGAC
ATTCCTTGATTCACGCGAGCACTGGTCGTCATCAAAACAGATGCTGGCAA
TGACAAAGTGCACAGGGTTGCCCTTGTGCAGGATAGATGCCTCTGATATC
CGAATTTGTTCCCATGCAGCTTTTGGCTCCCACAACCGACGCCCCTAACC
AACCCATTCCACATACGCAAAGTTTTTTATCTTGGGCGCACTCCGTTCCA
ATATCTTCACCAGTCTTCCCTCCCTCTCGCTCTCTTTGTTTTTCGCTGTG
CATGTGTGCAAGACCATCGGTTGCGCCAGAGAAAAAGGAAGTGGGGTTTT
GCGACAGAGACAGAAATATCTCCACCTGAACCCGCCAGTGCCGCTCCTGG
TGCCGGTGCCGTAGCTGCCTCCCCTGCTACCGCCACTGCCGATGTCCTTC
CCCCTATCGACCACGGTTCTGCCGCGCAACAATTGAAGATTATAATCGAG
CATACAGAGGCATTGTGTCGACGTACATCTACCGGCATGCGCGAGGCGCT
GTTCCCGCAGTTGCATTTGCTCTACTTTCAGCAAGCCGGTCACGCACGAT
CGATGGTTCCTCCCGGACGTCCTACATCGTGCCAACCAGGTTCCGGTGCC
GCCGCTGGTCCCAACCCTCTTACCGTCAACTTAGCGAAAGCAGTCGCTGC
GCGGATCGGTAGCGGTTTCGACGGTGCTGTGGCTGCGGGTGGTAGTGAGG
GTGCTGGTGCCCTTGCCGGTGCCGGTGTCAGCGATGCGACAGGTTAATCT
CGCGTGAAGCAGACTAAGGCACCTGGTTTTTTTTTCTCAACTCGTTGAAG
AAGAAGTTAGCGCGTGCTGACAAGGATCTAGCGCATTAGGTGACCAAGTG
TGTCTAGCGCTCCCATCTGATGTCGTGCATATTACAACCACCCTCATAAC
ACTCCGATATCCGTCCATCCACTTCCGTTTTTCCTTTGTCTCGTTTCTGC
GTTTGTTATCCTGCTACTCCAGGAGGTGTTGCTCCTGCTTCTGTGAGTAC
CGCCACCGCTGCTGCCCGTGCTTCTGCTGCTGCCACCGCTCCTGCTCCTG
CCGCGCCGGATGCTACCGCTGCAGCTGCTGAACACAGTTCTGTTCCTGCC
TCCTCCCCAGCCCCCACCCGCGCCGCTCCATCTGCAGCCAGCCACAGTAC
CCACCCTCTTCCTGCTGACTCTGCTCGAGCGGAGAGTCTGGACGGATTAG
GTGATGTAGTCGCATCTTCGATTATTGGCTGTTGGGTCTTACGCGCTATG
TCACCCCATCTGTTTTGAAGTGGTGGTGGAAGGTATCCCCGCCGCTCCTG
CTGCAGCCAGCCGCAGTTTTGTTACTCTCGGCCAGCCTCAGTGCCTCCAT
CATCCCTTGCTCTCATGTTTGCTAATGTCTGTGATATTCACCGTCCTCTA
CTTGCGGCGTTTGCACTCGTCGAACTGCTTGTGTTGATATTACAGAGGAG
ATCAGGAAGGAAAGGGATGCACGCTCCGCCGCCGAAGAAGCCCTGGTCGC
CGAGACGAGGAGGCGGGAGGAAGTCGCCCAAGCCCTGGCCGCCGAGAAGG
GGAAGCGCGAGGAAGCGGTGGAAGACCGTGTTCGTTGCGTGGTTTGCTAC
GATCGAGTGCGCACTGTTTATTTCCAGACCTGCCACCACCTGGTCGTCTG
CGGGCAGTGTAGTGATGAATTATCTGCTTGCCCCATCTGCAACACGATTG
TGCGGAAAAGGTCCAAAAACGTGATAATTTCGTGAAGACCTGTCAGAGAA
ACTTTTGGTATGCATACTAGTTGTGTAGTTTGCTTAGATCAAGCACGCAC
GGTAACTTCCACACCTGGTCATATGGTCGCTGCTTCTTTCGCTTGCTCTG
TCGCCGAAGGTGTACTCGGACGTTTCGAGTTCATGATAACTTTACTCGTT
CGCACGTACCTCTTGTTGAAGTACTCTCCTTGAGCTTTGAGAGCATTTAT
TGCGATTTGCAGGACAGTCGCCAGGCTCATCAGTTCATAGTAGCCCAGGC
C
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12585:1552..4902+

>mRNA_Ecto-sp13_S_contig12585.2136.1 ID=mRNA_Ecto-sp13_S_contig12585.2136.1|Name=mRNA_Ecto-sp13_S_contig12585.2136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1146bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12585:1552..4902+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCCGGGAAAGGGAACTTCTCCCGAGTCGGGGCAAACGAACAATGC
GACTCTTGGCGTGGAACGCAATATTTCGGGTTTGCCAAAGAAGGACTCCA
ACTCTGCAGCCGCTACCGCGACCACTGAGTCGGAAAACACTTCCGCAGAC
CATCGGTTGCGCCAGAGAAAAAGGAAGTGGGGTTTTGCGACAGAGACAGA
AATATCTCCACCTGAACCCGCCAGTGCCGCTCCTGGTGCCGGTGCCGTAG
CTGCCTCCCCTGCTACCGCCACTGCCGATGTCCTTCCCCCTATCGACCAC
GGTTCTGCCGCGCAACAATTGAAGATTATAATCGAGCATACAGAGGCATT
GTGTCGACGTACATCTACCGGCATGCGCGAGGCGCTGTTCCCGCAGTTGC
ATTTGCTCTACTTTCAGCAAGCCGGTCACGCACGATCGATGGTTCCTCCC
GGACGTCCTACATCGTGCCAACCAGGTTCCGGTGCCGCCGCTGGTCCCAA
CCCTCTTACCGTCAACTTAGCGAAAGCAGTCGCTGCGCGGATCGGTAGCG
GTTTCGACGGTGCTGTGGCTGCGGGTGGTAGTGAGGGTGCTGGTGCCCTT
GCCGGTGCCGGTGTCAGCGATGCGACAGGAGGTGTTGCTCCTGCTTCTGT
GAGTACCGCCACCGCTGCTGCCCGTGCTTCTGCTGCTGCCACCGCTCCTG
CTCCTGCCGCGCCGGATGCTACCGCTGCAGCTGCTGAACACAGTTCTGTT
CCTGCCTCCTCCCCAGCCCCCACCCGCGCCGCTCCATCTGCAGCCAGCCA
CAGTACCCACCCTCTTCCTGCTGACTCTGCTCGAGCGGAGAGTCTGGACG
GATTAGAGGAGATCAGGAAGGAAAGGGATGCACGCTCCGCCGCCGAAGAA
GCCCTGGTCGCCGAGACGAGGAGGCGGGAGGAAGTCGCCCAAGCCCTGGC
CGCCGAGAAGGGGAAGCGCGAGGAAGCGGTGGAAGACCGTGTTCGTTGCG
TGGTTTGCTACGATCGAGTGCGCACTGTTTATTTCCAGACCTGCCACCAC
CTGGTCGTCTGCGGGCAGTGTAGTGATGAATTATCTGCTTGCCCCATCTG
CAACACGATTGTGCGGAAAAGGTCCAAAAACGTGATAATTTCGTGA
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