prot_Ecto-sp13_S_contig9717.21355.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9717.21355.1
Unique Nameprot_Ecto-sp13_S_contig9717.21355.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length274
Homology
BLAST of mRNA_Ecto-sp13_S_contig9717.21355.1 vs. uniprot
Match: A0A6H5JVX5_9PHAE (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX5_9PHAE)

HSP 1 Score: 476 bits (1226), Expect = 2.870e-166
Identity = 249/274 (90.88%), Postives = 256/274 (93.43%), Query Frame = 0
Query:    1 MAPVGLAYVVALLQASGANALLFGVSHHPHLRTSCLPRGHTHQRQGLTMVRMDKGKGGSGWGFPRLRDRRLRPRKGRAIEGGSADNGGNTLRAPVPALPVAAAAGVEGRPVGGVNVGVDGDRGAFRGRTDSSVNDMGFELSIWRSFGSFRRHVGETFLSSREKAKAPRDAWRYMGTLVRSQRGVLLASVVTLVLAAACEVAVPHYSSRALNAAAFANDRVEFARSLQGMVAYSLLASVFTGLRGACFWLAGTHVVAKVRFDLLSSLLKQDISFH 274
            MAPVGLAYVVA LQASGANALLFGVSH+PHL+TSCLPRG   QRQGLTMVR+DKGKGG GWGFPRL D RLRPRKG+ IEGGSADN G T RAPVPALPVAAAAGVEGR VGGV+VGVDGD GAFRGR ++S  DMGFEL IWRSFGSFRRHVGETFLSSREKAKAPRDAWRYMGTLVRSQ GVLLASVVTLVLAAACEVAVPHYSSRALNAAAFANDRVEFARSLQGMVAYSLLASVFTGLRGACFWLAGTHVVAKVRFDLLSSLLKQDISFH
Sbjct:    1 MAPVGLAYVVAFLQASGANALLFGVSHYPHLQTSCLPRGRAQQRQGLTMVRVDKGKGGGGWGFPRLWDGRLRPRKGKTIEGGSADNEGRTFRAPVPALPVAAAAGVEGRSVGGVDVGVDGDGGAFRGRKENSETDMGFELCIWRSFGSFRRHVGETFLSSREKAKAPRDAWRYMGTLVRSQTGVLLASVVTLVLAAACEVAVPHYSSRALNAAAFANDRVEFARSLQGMVAYSLLASVFTGLRGACFWLAGTHVVAKVRFDLLSSLLKQDISFH 274          
BLAST of mRNA_Ecto-sp13_S_contig9717.21355.1 vs. uniprot
Match: D7G5Q1_ECTSI (ATP-binding cassette, sub-family B, member 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q1_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 1.840e-82
Identity = 137/139 (98.56%), Postives = 139/139 (100.00%), Query Frame = 0
Query:  136 MGFELSIWRSFGSFRRHVGETFLSSREKAKAPRDAWRYMGTLVRSQRGVLLASVVTLVLAAACEVAVPHYSSRALNAAAFANDRVEFARSLQGMVAYSLLASVFTGLRGACFWLAGTHVVAKVRFDLLSSLLKQDISFH 274
            MGFELSIWRSFGSFRRHVGETFLSSREKAKAPRDAWRYMGTLVRSQRGVLLAS+VTLVLAAACE+AVPHYSSRALNAAAFANDRVEFARSLQGMVAYSLLASVFTGLRGACFWLAGTHVVAKVRFDLLSSLLKQDISFH
Sbjct:    1 MGFELSIWRSFGSFRRHVGETFLSSREKAKAPRDAWRYMGTLVRSQRGVLLASIVTLVLAAACEIAVPHYSSRALNAAAFANDRVEFARSLQGMVAYSLLASVFTGLRGACFWLAGTHVVAKVRFDLLSSLLKQDISFH 139          
BLAST of mRNA_Ecto-sp13_S_contig9717.21355.1 vs. uniprot
Match: A0A7S2HIK7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HIK7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.140e-16
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 0
Query:  163 KAKAPRDAWRYMGTLVRSQRGVLLASVVTLVLAAACEVAVPHYSSRALNAAAFANDRVEFARSLQGMVAYSLLASVFTGLRGACFWLAGTHVVAKVRFDLLSSLLKQDISF 273
            K++ P   W  +  L  + + V+L SVV+LVLAA C+ AVPHYS+ AL A   A+D      S++ +V  S+ +++FTGLRGA F +AG  VV ++R  L ++LLKQ+++F
Sbjct:   87 KSQRPTGEWARLWRLAAADKNVMLVSVVSLVLAAVCDAAVPHYSAMALTAVT-ASDSNRIVTSIRSLVGVSMGSALFTGLRGAFFTVAGARVVTRLRDALFTNLLKQEVAF 196          
BLAST of mRNA_Ecto-sp13_S_contig9717.21355.1 vs. uniprot
Match: A0A5J4XG09_9CHLO (ABC transporter B family member chloroplastic-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XG09_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 5.200e-9
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 0
Query:  193 VLAAACEVAVPHYSSRALNAAAFANDRVEFARSLQGMVAYSLLASVFTGLRGACFWLAGTHVVAKVRFDLLSSLLKQDISF 273
            VLAAA E+A+PHY S ++ A   AN +  F R++Q +   +    +F GLRG CF L  T ++ ++R DL  SLLKQ+++F
Sbjct:   12 VLAAASELAIPHYVSASIFAITKANSKTLFKRNVQLLATMAFSYGIFAGLRGFCFSLLNTDLIQRLRGDLFGSLLKQEVAF 92          
BLAST of mRNA_Ecto-sp13_S_contig9717.21355.1 vs. uniprot
Match: A0A7S1ZSW2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZSW2_TRICV)

HSP 1 Score: 63.2 bits (152), Expect = 4.470e-8
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 0
Query:  172 RYMGTLVRSQRGVLLASVVTLVLAAACEVAVPHYSSRALN--AAAFANDRVEFARSLQGMVAYSLLASVFTGLRGACFWLAGTHVVAKVRFDLLSSLLKQDISF 273
            R +  LV     +L+ S   L+L A     VPHY S+ +   A+A A  RVE  ++L G+ A SL A++FT LRGA FW+AG+     VR  L  +LL Q+ +F
Sbjct:   18 RQLVKLVGYDGPLLVPSFGCLILGALATSIVPHYYSQCVTCLASASATTRVEMVQALTGLGAMSLAAALFTSLRGALFWIAGSRANYNVRVKLHRNLLLQEAAF 121          
BLAST of mRNA_Ecto-sp13_S_contig9717.21355.1 vs. uniprot
Match: A0A2K5CPD8_AOTNA (HLA class II histocompatibility antigen, DO beta chain n=2 Tax=Aotus nancymaae TaxID=37293 RepID=A0A2K5CPD8_AOTNA)

HSP 1 Score: 58.5 bits (140), Expect = 4.710e-6
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 0
Query:  171 WRYMGTLVRSQRGVLLASVVTLVLAAACEVAVPHYSSRALNAAAFANDRVEFARSLQGMVAYSLLASVFTGLRGACFWLAGTHVVAKVRFDLLSSLLKQDISF 273
            WR +  L R     ++A+V  LVLA   E  +PHY+ R ++      D   FA ++  M  +S  +S+F G RG CF    + +  ++R  L SSLL+QD+ F
Sbjct:  252 WRLL-KLSRPDLPFIIAAVFFLVLAVLGETLIPHYTGRVIDILGGDFDPHAFASAIFFMCLFSFGSSLFAGCRGGCFTYTMSRINLRIREQLFSSLLRQDLGF 353          
BLAST of mRNA_Ecto-sp13_S_contig9717.21355.1 vs. uniprot
Match: UPI000C1CE323 (ABC transporter B family member 26, chloroplastic isoform X1 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CE323)

HSP 1 Score: 58.2 bits (139), Expect = 6.120e-6
Identity = 36/104 (34.62%), Postives = 62/104 (59.62%), Query Frame = 0
Query:  170 AWRYMGTLVRSQRGVLLASVVTLVLAAACEVAVPHYSSRALNAAAFANDRVEFARSLQGMVAYSLLASVFTGLRGACFWLAGTHVVAKVRFDLLSSLLKQDISF 273
            A + M  L+   R V+  +   L+LAA  E+++PHY + ++ AA  +   V F ++++ +V   + A + +G+RGA F +A   +V ++R  L S+LL QDISF
Sbjct:  118 ALKRMWELIAQDRWVIFTAFAALILAALSEISIPHYLTASIFAAQSSKIAV-FHQNVRLLVLLCITAGICSGVRGALFGIANMILVKRMREQLYSTLLLQDISF 220          
BLAST of mRNA_Ecto-sp13_S_contig9717.21355.1 vs. uniprot
Match: A0A7S3CH52_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CH52_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 1.580e-5
Identity = 37/113 (32.74%), Postives = 60/113 (53.10%), Query Frame = 0
Query:  162 EKAKAPRDAWRYMGTLVRSQRGVLLASVVTLVLAAACEVAVPHYSSRALNAAAFANDRVEFARSLQGMVAYSLLASVFTGLRGACFWLAGTHVVAKVRFDLLSSLLKQDISFH 274
            +KA +  D    M  L+R  R      +VTLVLAA  E+A+PH++++ + A    N  + F   ++ ++  S+  SV   +RG  F       V ++R  L  +LL+QDI+FH
Sbjct:   89 DKAVSLLDFVGIMFDLLRPYRATFAFGLVTLVLAAGAELALPHFTAKTIFAIQKGNQEL-FRGCIRWLLGLSVAFSVTASMRGMTFGFLNQRFVFRLRTKLFENLLRQDITFH 200          
BLAST of mRNA_Ecto-sp13_S_contig9717.21355.1 vs. uniprot
Match: Q6Q4S8_PANTR (Antigen peptide transporter 2 (Fragment) n=5 Tax=Pan troglodytes verus TaxID=37012 RepID=Q6Q4S8_PANTR)

HSP 1 Score: 55.8 bits (133), Expect = 2.840e-5
Identity = 36/103 (34.95%), Postives = 54/103 (52.43%), Query Frame = 0
Query:  171 WRYMGTLVRSQRGVLLASVVTLVLAAACEVAVPHYSSRALNAAAFANDRVEFARSLQGMVAYSLLASVFTGLRGACFWLAGTHVVAKVRFDLLSSLLKQDISF 273
            WR +  L R    +L+A+   LVLA   E  +PHYS R ++      D   FA ++  M  +S  +S+  G RG CF    + +  ++R  L SSLL+QD+ F
Sbjct:  139 WRLL-KLSRPDLPLLVAAFFFLVLAVLGETLIPHYSGRVIDILGGDFDPHAFASAIFFMCLFSFGSSLSAGCRGGCFTYTMSRINLRIREQLFSSLLRQDLGF 240          
BLAST of mRNA_Ecto-sp13_S_contig9717.21355.1 vs. uniprot
Match: TAP2_HUMAN (Antigen peptide transporter 2 n=90 Tax=Simiiformes TaxID=314293 RepID=TAP2_HUMAN)

HSP 1 Score: 55.8 bits (133), Expect = 3.510e-5
Identity = 36/103 (34.95%), Postives = 54/103 (52.43%), Query Frame = 0
Query:  171 WRYMGTLVRSQRGVLLASVVTLVLAAACEVAVPHYSSRALNAAAFANDRVEFARSLQGMVAYSLLASVFTGLRGACFWLAGTHVVAKVRFDLLSSLLKQDISF 273
            WR +  L R    +L+A+   LVLA   E  +PHYS R ++      D   FA ++  M  +S  +S+  G RG CF    + +  ++R  L SSLL+QD+ F
Sbjct:  139 WRLL-KLSRPDLPLLVAAFFFLVLAVLGETLIPHYSGRVIDILGGDFDPHAFASAIFFMCLFSFGSSLSAGCRGGCFTYTMSRINLRIREQLFSSLLRQDLGF 240          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9717.21355.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JVX5_9PHAE2.870e-16690.88ABC transmembrane type-1 domain-containing protein... [more]
D7G5Q1_ECTSI1.840e-8298.56ATP-binding cassette, sub-family B, member 8 n=1 T... [more]
A0A7S2HIK7_9STRA5.140e-1643.24Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A5J4XG09_9CHLO5.200e-943.21ABC transporter B family member chloroplastic-like... [more]
A0A7S1ZSW2_TRICV4.470e-840.38Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A2K5CPD8_AOTNA4.710e-634.95HLA class II histocompatibility antigen, DO beta c... [more]
UPI000C1CE3236.120e-634.62ABC transporter B family member 26, chloroplastic ... [more]
A0A7S3CH52_9CHLO1.580e-532.74Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
Q6Q4S8_PANTR2.840e-534.95Antigen peptide transporter 2 (Fragment) n=5 Tax=P... [more]
TAP2_HUMAN3.510e-534.95Antigen peptide transporter 2 n=90 Tax=Simiiformes... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036640ABC transporter type 1, transmembrane domain superfamilyGENE3D1.20.1560.10coord: 168..274
e-value: 9.9E-14
score: 53.3
IPR036640ABC transporter type 1, transmembrane domain superfamilySUPERFAMILY90123ABC transporter transmembrane regioncoord: 168..274
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..182
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 183..202
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 203..228
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 251..274
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 229..250
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.561
NoneNo IPR availableTMHMMTMhelixcoord: 4..26
NoneNo IPR availableTMHMMTMhelixcoord: 229..251
NoneNo IPR availableTMHMMTMhelixcoord: 183..205
IPR011527ABC transporter type 1, transmembrane domainPROSITEPS50929ABC_TM1Fcoord: 186..274
score: 13.323

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9717contigEcto-sp13_S_contig9717:479..5855 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9717.21355.1mRNA_Ecto-sp13_S_contig9717.21355.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9717 159..5855 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9717.21355.1 ID=prot_Ecto-sp13_S_contig9717.21355.1|Name=mRNA_Ecto-sp13_S_contig9717.21355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=274bp
MAPVGLAYVVALLQASGANALLFGVSHHPHLRTSCLPRGHTHQRQGLTMV
RMDKGKGGSGWGFPRLRDRRLRPRKGRAIEGGSADNGGNTLRAPVPALPV
AAAAGVEGRPVGGVNVGVDGDRGAFRGRTDSSVNDMGFELSIWRSFGSFR
RHVGETFLSSREKAKAPRDAWRYMGTLVRSQRGVLLASVVTLVLAAACEV
AVPHYSSRALNAAAFANDRVEFARSLQGMVAYSLLASVFTGLRGACFWLA
GTHVVAKVRFDLLSSLLKQDISFH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036640ABC1_TM_sf
IPR011527ABC1_TM_dom