mRNA_Ecto-sp13_S_contig97159.21353.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig97159.21353.1
Unique NamemRNA_Ecto-sp13_S_contig97159.21353.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig97159.21353.1 vs. uniprot
Match: A0A6H5JQ48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ48_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 9.840e-21
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 IIMAPASPSEEITALCRQPKYRSRVIYFRGSVTNPRDMAAVCAE 132
            IIMAPASPSEEITALCRQPKYRSRVIYFRGSVTNPRDMAAVCAE
Sbjct:  333 IIMAPASPSEEITALCRQPKYRSRVIYFRGSVTNPRDMAAVCAE 376
[Close]
BLAST of mRNA_Ecto-sp13_S_contig97159.21353.1 vs. uniprot
Match: D8LEK1_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK1_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.830e-20
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 IIMAPASPSEEITALCRQPKYRSRVIYFRGSVTNPRDMAAVCAE 132
            ++MAPASPSEEI+ALCRQPKYRSRVIYFRGSVTNPRDMAAVCAE
Sbjct:  231 VVMAPASPSEEISALCRQPKYRSRVIYFRGSVTNPRDMAAVCAE 274
[Close]
BLAST of mRNA_Ecto-sp13_S_contig97159.21353.1 vs. uniprot
Match: A0A6H5K4I5_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I5_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.270e-9
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 IIMAPASPSEEITALCRQPKYRSRVIYFRGSVTNPRDMAAVCAE 132
            +IM+P+SPS E+ ++ R P + SRVIYFRGSV +P DM AVCAE
Sbjct:  328 VIMSPSSPSPEVLSVIRSPLFMSRVIYFRGSVMDPLDMNAVCAE 371
[Close]
BLAST of mRNA_Ecto-sp13_S_contig97159.21353.1 vs. uniprot
Match: D7FXB0_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXB0_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 5.690e-9
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 IIMAPASPSEEITALCRQPKYRSRVIYFRGSVTNPRDMAAVCAE 132
            +IM+P+ PS E+ ++ R P + SRVIYFRGSV +P DM AVCAE
Sbjct:  287 VIMSPSPPSPEVLSVIRSPLFMSRVIYFRGSVMDPLDMNAVCAE 330
[Close]
BLAST of mRNA_Ecto-sp13_S_contig97159.21353.1 vs. uniprot
Match: A0A836CJK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJK7_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.530e-5
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 IIMAPASPSEEITALCRQPKYRSRVIYFRGSVTNPRDMAAVCAE 132
            ++M+PA+PS  +  L   P+++   +Y+RGSV NP D+AAV AE
Sbjct:   50 VVMSPAAPSAAVKNLLASPQFKRHTLYYRGSVQNPLDLAAVRAE 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig97159.21353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JQ48_9PHAE9.840e-21100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEK1_ECTSI2.830e-2093.18Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K4I5_9PHAE1.270e-961.36Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FXB0_ECTSI5.690e-959.09Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CJK7_9STRA1.530e-545.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig97159contigEcto-sp13_S_contig97159:41..175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size135
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size129
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464235.1229403-UTR-Ecto-sp13_S_contig97159:40..461681464235.1229403-UTR-Ecto-sp13_S_contig97159:40..46Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig97159 41..46 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464235.133422-CDS-Ecto-sp13_S_contig97159:46..1751681464235.133422-CDS-Ecto-sp13_S_contig97159:46..175Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig97159 47..175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig97159.21353.1prot_Ecto-sp13_S_contig97159.21353.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig97159 47..175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig97159.21353.1

>prot_Ecto-sp13_S_contig97159.21353.1 ID=prot_Ecto-sp13_S_contig97159.21353.1|Name=mRNA_Ecto-sp13_S_contig97159.21353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
MAPASPSEEITALCRQPKYRSRVIYFRGSVTNPRDMAAVCAE*
back to top

mRNA from alignment at Ecto-sp13_S_contig97159:41..175+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig97159.21353.1 ID=mRNA_Ecto-sp13_S_contig97159.21353.1|Name=mRNA_Ecto-sp13_S_contig97159.21353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97159:41..175+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCATCATGGCGCCCGCATCCCCGAGCGAGGAGATCACTGCCCTGTGCCG
CCAGCCCAAGTACCGGTCCAGAGTCATCTACTTCCGGGGCAGCGTGACCA
ACCCCAGGGATATGGCCGCTGTCTGTGCCGAGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig97159:41..175+

>mRNA_Ecto-sp13_S_contig97159.21353.1 ID=mRNA_Ecto-sp13_S_contig97159.21353.1|Name=mRNA_Ecto-sp13_S_contig97159.21353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97159:41..175+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCCCGCATCCCCGAGCGAGGAGATCACTGCCCTGTGCCGCCAGCC
CAAGTACCGGTCCAGAGTCATCTACTTCCGGGGCAGCGTGACCAACCCCA
GGGATATGGCCGCTGTCTGTGCCGAGTGA
back to top