prot_Ecto-sp13_S_contig9711.21349.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9711.21349.1
Unique Nameprot_Ecto-sp13_S_contig9711.21349.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length444
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9711.21349.1 vs. uniprot
Match: D7FNF1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNF1_ECTSI)

HSP 1 Score: 738 bits (1905), Expect = 1.550e-266
Identity = 425/447 (95.08%), Postives = 426/447 (95.30%), Query Frame = 0 
Query:    1 MATIRRRGGPSPAGLQQRVGLAAAGVVLLAVSWSARAFVLTPPRVFTTAGKFNAALPASPRQGSRFFSIVMSEKNNA---AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQQ-QANTAIENVDAAAAVAQEEVRQAGEEVVRLTATTVVRALPGTWLIAGLPKWMHILRRRMITKEDWMHLHASSGALYIAGGSLYLLGVIGMELFTGTPQLDTTSALPLCVLGFGALNTFSSIPMANTRSWVLSGLCLSTMQLWNAWYVSGAYPASLAAADPWLAAANLSLLVIACVEAEEQILAEKRQREILAQKGRRRTGKIHIRGDDHVEGDAMNRAGSYGSLIFNAPHLYATLVGSGWVERLGEAFPDSPALLFHAYVALATSTSIAFLAPTLYQRRLIDAKMMSSMQFLTLAPAVMSLIDASVMGAAATNNPIDIYLGFLH 443
            MATIRRRGGPSPAGLQQRVGLAAAGVVLL VSWSARAFVLTPPRVF  AGKFNAALPASPRQGS FF I+MSEKNN    AA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQQ QANTAIENVDA  AVAQEEVRQAGEEVVRLTATTV RALPGTWL AGLPKWMHILRRRMITKEDWMHLHASSGALYIAGGSLYLLGVIGMELFTGTPQLDTTSALPLCVLGFGALNTFSSIPMANTRSWVLSGLCLSTMQLWNAWYVSGAYPASLA ADPWLAAANLSLLVIACVEAEEQILAEKRQREILAQKGRRRTGKIHIRGDDHVEGDAMNRAGSYGSLIFNAPHLYATLVGSGWVERLGEAFPDSPALLFHAYVALATSTSIAFLAPTLYQRRLIDAKMMSSMQFLT APAVMSLIDASVMGAAATNNPIDIYLGFLH
Sbjct:    1 MATIRRRGGPSPAGLQQRVGLAAAGVVLLGVSWSARAFVLTPPRVFAAAGKFNAALPASPRQGSSFFKIMMSEKNNVEIVAAAGPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQQHQANTAIENVDAVGAVAQEEVRQAGEEVVRLTATTVARALPGTWLTAGLPKWMHILRRRMITKEDWMHLHASSGALYIAGGSLYLLGVIGMELFTGTPQLDTTSALPLCVLGFGALNTFSSIPMANTRSWVLSGLCLSTMQLWNAWYVSGAYPASLAPADPWLAAANLSLLVIACVEAEEQILAEKRQREILAQKGRRRTGKIHIRGDDHVEGDAMNRAGSYGSLIFNAPHLYATLVGSGWVERLGEAFPDSPALLFHAYVALATSTSIAFLAPTLYQRRLIDAKMMSSMQFLTFAPAVMSLIDASVMGAAATNNPIDIYLGFLH 447
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BLAST of mRNA_Ecto-sp13_S_contig9711.21349.1 vs. uniprot
Match: A0A835YRT3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT3_9STRA)

HSP 1 Score: 147 bits (372), Expect = 5.410e-37
Identity = 100/298 (33.56%), Postives = 155/298 (52.01%), Query Frame = 0 
Query:  151 ATTVVRALPGTWLIAGLPKWMHILRRRMITKEDWMHLHASSGALYIAGGSLYLLGVIGMELFTGTPQLDTTSALPLCVLGFGALNTFSSIPMANTRS----WVLSGLCLSTMQLWNAWYVSGAYPASLAAADPWLAAANLSLLVIACVEAEEQILAEKRQREILAQKGRRRTGKIHIRGDDHVEGDAMN-RAGSYGSLIFNAPHLYATLVGSG-WVERLGEAFPDSPALLFHAYVALATSTSIAFLAPTLYQRRLIDAKMMSSMQFLTLAPAVMSLIDASVMGAAATNNPIDIYLGFL 442
            A   + A PGT        W  ++++RM TK D++HLHA SG  +   G+L+++  +  +   G P      AL L +L  GA+N FS +PM +  +    +   G+ ++   +W AW+VSG YPA LA+ DPWLA A L  +V   V++E   +A  R+  I+  +  + T       D  V    +N RA SY +L+ + P LY  L G   W+ R+ E +P  P +L+HA  A+A + SI FL  TL  R+L+  +    +Q + LAP V + ID        + +P  +Y GF+
Sbjct:   58 AAVAIPAAPGT----SKRNWWGLMKQRMWTKMDFLHLHAISGVAFSGVGTLWIMKYL-YDAAQGAPMQAAPDALSLGLLTVGAINCFSCLPMTSNPNQAGGFKFLGVGMTLNSIWQAWWVSGTYPAGLASVDPWLAGAFLIAIVSGIVDSE---VALSRELGIMQSRRVQPT-------DVEVNETVINHRAASYPNLL-HIPVLYNILAGGQPWLARVSERWPAEPMMLYHACFAIAVANSIVFLCATLKDRKLMTLRAWLYVQLIVLAPLVTTAIDLHAAPGQLSIDPTQVYAGFI 339
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9711.21349.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNF1_ECTSI1.550e-26695.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YRT3_9STRA5.410e-3733.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 293..313
NoneNo IPR availableCOILSCoilCoilcoord: 125..152
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..153
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 223..240
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 343..360
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 212..222
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 396..406
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 241..246
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 172..191
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 268..278
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..37
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 372..395
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 298..342
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 154..171
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 407..430
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 279..297
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 361..371
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 31..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 19..30
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 192..211
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 431..443
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 247..267
NoneNo IPR availableTMHMMTMhelixcoord: 373..395
NoneNo IPR availableTMHMMTMhelixcoord: 247..269
NoneNo IPR availableTMHMMTMhelixcoord: 221..240
NoneNo IPR availableTMHMMTMhelixcoord: 408..430
NoneNo IPR availableTMHMMTMhelixcoord: 184..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9711contigEcto-sp13_S_contig9711:1237..5251 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9711.21349.1mRNA_Ecto-sp13_S_contig9711.21349.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9711 1237..5251 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9711.21349.1 ID=prot_Ecto-sp13_S_contig9711.21349.1|Name=mRNA_Ecto-sp13_S_contig9711.21349.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=444bp
MATIRRRGGPSPAGLQQRVGLAAAGVVLLAVSWSARAFVLTPPRVFTTAG
KFNAALPASPRQGSRFFSIVMSEKNNAAAAAPAAATATATAVRASAPAAG
GGGASTAAAAATATAAVQQQANTAIENVDAAAAVAQEEVRQAGEEVVRLT
ATTVVRALPGTWLIAGLPKWMHILRRRMITKEDWMHLHASSGALYIAGGS
LYLLGVIGMELFTGTPQLDTTSALPLCVLGFGALNTFSSIPMANTRSWVL
SGLCLSTMQLWNAWYVSGAYPASLAAADPWLAAANLSLLVIACVEAEEQI
LAEKRQREILAQKGRRRTGKIHIRGDDHVEGDAMNRAGSYGSLIFNAPHL
YATLVGSGWVERLGEAFPDSPALLFHAYVALATSTSIAFLAPTLYQRRLI
DAKMMSSMQFLTLAPAVMSLIDASVMGAAATNNPIDIYLGFLH*
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