mRNA_Ecto-sp13_S_contig9711.21349.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9711.21349.1
Unique NamemRNA_Ecto-sp13_S_contig9711.21349.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9711.21349.1 vs. uniprot
Match: D7FNF1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNF1_ECTSI)

HSP 1 Score: 738 bits (1905), Expect = 1.550e-266
Identity = 425/447 (95.08%), Postives = 426/447 (95.30%), Query Frame = 1 
Query:    1 MATIRRRGGPSPAGLQQRVGLAAAGVVLLAVSWSARAFVLTPPRVFTTAGKFNAALPASPRQGSRFFSIVMSEKNNA---AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQQ-QANTAIENVDAAAAVAQEEVRQAGEEVVRLTATTVVRALPGTWLIAGLPKWMHILRRRMITKEDWMHLHASSGALYIAGGSLYLLGVIGMELFTGTPQLDTTSALPLCVLGFGALNTFSSIPMANTRSWVLSGLCLSTMQLWNAWYVSGAYPASLAAADPWLAAANLSLLVIACVEAEEQILAEKRQREILAQKGRRRTGKIHIRGDDHVEGDAMNRAGSYGSLIFNAPHLYATLVGSGWVERLGEAFPDSPALLFHAYVALATSTSIAFLAPTLYQRRLIDAKMMSSMQFLTLAPAVMSLIDASVMGAAATNNPIDIYLGFLH 1329
            MATIRRRGGPSPAGLQQRVGLAAAGVVLL VSWSARAFVLTPPRVF  AGKFNAALPASPRQGS FF I+MSEKNN    AA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQQ QANTAIENVDA  AVAQEEVRQAGEEVVRLTATTV RALPGTWL AGLPKWMHILRRRMITKEDWMHLHASSGALYIAGGSLYLLGVIGMELFTGTPQLDTTSALPLCVLGFGALNTFSSIPMANTRSWVLSGLCLSTMQLWNAWYVSGAYPASLA ADPWLAAANLSLLVIACVEAEEQILAEKRQREILAQKGRRRTGKIHIRGDDHVEGDAMNRAGSYGSLIFNAPHLYATLVGSGWVERLGEAFPDSPALLFHAYVALATSTSIAFLAPTLYQRRLIDAKMMSSMQFLT APAVMSLIDASVMGAAATNNPIDIYLGFLH
Sbjct:    1 MATIRRRGGPSPAGLQQRVGLAAAGVVLLGVSWSARAFVLTPPRVFAAAGKFNAALPASPRQGSSFFKIMMSEKNNVEIVAAAGPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQQHQANTAIENVDAVGAVAQEEVRQAGEEVVRLTATTVARALPGTWLTAGLPKWMHILRRRMITKEDWMHLHASSGALYIAGGSLYLLGVIGMELFTGTPQLDTTSALPLCVLGFGALNTFSSIPMANTRSWVLSGLCLSTMQLWNAWYVSGAYPASLAPADPWLAAANLSLLVIACVEAEEQILAEKRQREILAQKGRRRTGKIHIRGDDHVEGDAMNRAGSYGSLIFNAPHLYATLVGSGWVERLGEAFPDSPALLFHAYVALATSTSIAFLAPTLYQRRLIDAKMMSSMQFLTFAPAVMSLIDASVMGAAATNNPIDIYLGFLH 447
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BLAST of mRNA_Ecto-sp13_S_contig9711.21349.1 vs. uniprot
Match: A0A835YRT3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT3_9STRA)

HSP 1 Score: 147 bits (372), Expect = 5.410e-37
Identity = 100/298 (33.56%), Postives = 155/298 (52.01%), Query Frame = 1 
Query:  451 ATTVVRALPGTWLIAGLPKWMHILRRRMITKEDWMHLHASSGALYIAGGSLYLLGVIGMELFTGTPQLDTTSALPLCVLGFGALNTFSSIPMANTRS----WVLSGLCLSTMQLWNAWYVSGAYPASLAAADPWLAAANLSLLVIACVEAEEQILAEKRQREILAQKGRRRTGKIHIRGDDHVEGDAMN-RAGSYGSLIFNAPHLYATLVGSG-WVERLGEAFPDSPALLFHAYVALATSTSIAFLAPTLYQRRLIDAKMMSSMQFLTLAPAVMSLIDASVMGAAATNNPIDIYLGFL 1326
            A   + A PGT        W  ++++RM TK D++HLHA SG  +   G+L+++  +  +   G P      AL L +L  GA+N FS +PM +  +    +   G+ ++   +W AW+VSG YPA LA+ DPWLA A L  +V   V++E   +A  R+  I+  +  + T       D  V    +N RA SY +L+ + P LY  L G   W+ R+ E +P  P +L+HA  A+A + SI FL  TL  R+L+  +    +Q + LAP V + ID        + +P  +Y GF+
Sbjct:   58 AAVAIPAAPGT----SKRNWWGLMKQRMWTKMDFLHLHAISGVAFSGVGTLWIMKYL-YDAAQGAPMQAAPDALSLGLLTVGAINCFSCLPMTSNPNQAGGFKFLGVGMTLNSIWQAWWVSGTYPAGLASVDPWLAGAFLIAIVSGIVDSE---VALSRELGIMQSRRVQPT-------DVEVNETVINHRAASYPNLL-HIPVLYNILAGGQPWLARVSERWPAEPMMLYHACFAIAVANSIVFLCATLKDRKLMTLRAWLYVQLIVLAPLVTTAIDLHAAPGQLSIDPTQVYAGFI 339
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9711.21349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNF1_ECTSI1.550e-26695.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YRT3_9STRA5.410e-3733.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9711contigEcto-sp13_S_contig9711:1237..5251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score738.0
Seed ortholog evalue2.5e-210
Seed eggNOG ortholog2880.D7FNF1
Model size1332
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG OGs2EG3I@1,2SM4Z@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_005670.1
Cds size1332
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464234.869086-CDS-Ecto-sp13_S_contig9711:1236..14221681464234.869086-CDS-Ecto-sp13_S_contig9711:1236..1422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9711 1237..1422 -
1681464234.8813307-CDS-Ecto-sp13_S_contig9711:1696..19281681464234.8813307-CDS-Ecto-sp13_S_contig9711:1696..1928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9711 1697..1928 -
1681464234.8910637-CDS-Ecto-sp13_S_contig9711:2131..24661681464234.8910637-CDS-Ecto-sp13_S_contig9711:2131..2466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9711 2132..2466 -
1681464234.9008296-CDS-Ecto-sp13_S_contig9711:4672..52511681464234.9008296-CDS-Ecto-sp13_S_contig9711:4672..5251Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9711 4673..5251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9711.21349.1prot_Ecto-sp13_S_contig9711.21349.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9711 1237..5251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9711.21349.1

>prot_Ecto-sp13_S_contig9711.21349.1 ID=prot_Ecto-sp13_S_contig9711.21349.1|Name=mRNA_Ecto-sp13_S_contig9711.21349.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=444bp
MATIRRRGGPSPAGLQQRVGLAAAGVVLLAVSWSARAFVLTPPRVFTTAG
KFNAALPASPRQGSRFFSIVMSEKNNAAAAAPAAATATATAVRASAPAAG
GGGASTAAAAATATAAVQQQANTAIENVDAAAAVAQEEVRQAGEEVVRLT
ATTVVRALPGTWLIAGLPKWMHILRRRMITKEDWMHLHASSGALYIAGGS
LYLLGVIGMELFTGTPQLDTTSALPLCVLGFGALNTFSSIPMANTRSWVL
SGLCLSTMQLWNAWYVSGAYPASLAAADPWLAAANLSLLVIACVEAEEQI
LAEKRQREILAQKGRRRTGKIHIRGDDHVEGDAMNRAGSYGSLIFNAPHL
YATLVGSGWVERLGEAFPDSPALLFHAYVALATSTSIAFLAPTLYQRRLI
DAKMMSSMQFLTLAPAVMSLIDASVMGAAATNNPIDIYLGFLH*
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mRNA from alignment at Ecto-sp13_S_contig9711:1237..5251-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9711.21349.1 ID=mRNA_Ecto-sp13_S_contig9711.21349.1|Name=mRNA_Ecto-sp13_S_contig9711.21349.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4015bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9711:1237..5251- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTACCATCAGGCGTCGCGGCGGCCCTTCCCCGGCAGGGCTGCAGCA
GAGGGTCGGGCTGGCAGCGGCTGGCGTCGTTCTTCTCGCGGTTAGTTGGT
CGGCCAGGGCGTTTGTTCTCACTCCCCCCAGAGTTTTCACAACCGCGGGA
AAGTTCAACGCTGCTCTACCCGCCTCACCTCGTCAAGGATCCCGTTTCTT
CTCGATAGTGATGTCGGAAAAAAATAATGCTGCAGCCGCCGCGCCCGCCG
CCGCCACCGCCACGGCGACGGCGGTTCGAGCATCAGCACCAGCAGCAGGA
GGAGGAGGGGCGTCCACTGCTGCTGCAGCCGCTACCGCTACTGCTGCCGT
TCAACAGCAGGCCAACACGGCTATCGAGAACGTGGACGCCGCGGCTGCTG
TTGCACAGGAGGAGGTCAGGCAAGCGGGCGAAGAGGTCGTGAGGCTGACG
GCCACGACTGTTGTGAGGGCGCTGCCCGGGACCTGGCTGATCGCCGGCCT
GCCCAAGTGGATGCACATCCTGCGGCGAAGGATGATCACCAAGGAGGACT
GGATGCATCTCCACGCGTCGAGTGGGGCGGTAAGTAGTACAATGTTGTCG
TCAAGATACACAATCACGAAAATTGTGCTGGATGTACCACTGCTGTGCGT
GCCACAACCCAAGATTCTCAAGATATGACTCGCCCAAGAAAAACGTCCAA
GAACTTCCGCCCAACGTTTTAGTGAACTCTCAAGTTTTGTTTCTCTGTTA
GTGTCAAAGTTAGCGTCCTCTGTTGCCGTTGCGAGTGGCGAGGACACCCC
GTCGACGTGTCTGCTCGTCACACCAGCCCCTCCCAGGGTTCTTCCTCTCG
ATGTCCCCTTTCTCTATGCATATATATGTACTTGCCGCCGGAAAAGATTG
ACCGGAACATTATTTCTTCTGCTGCGCATATACATATATATGTGCACCAA
GATCAAGGCTCAAGGGTTTGATGCAAATATCTCCGGAGTATCTATGCCTG
GAATTATTTTGCCCACATCCCCCTCTGTTCTTCTTCCCCGCATAAGATGC
AAGTTGGTTTGATCTTCAACCCCACCTATATCGATTGGGTCACGGCCTGT
TTGTGATTGACTTGGAGCCTCAGTGAGCTGGTTTTACACCAATCACGGCA
CCACAAGCGGTTTTACACCAATCAATTCTCTTCGTTCGCCCACCCCACGA
CGCATGCTGGCGATTACTGTTGCTGCGCCCGCAAATCGCATGCGCTGAAT
GAGCGTATCATCTTGCCGACACTTCCGACTCTTGAATCCAAAATTACTTG
ATTGATAAAGTCATCTCCGCGTGTTATTCCCGCTTCTTTTATTGCACCAC
GCTTTTACTCTCACTCCTCCCCTGTTCCCACAATCAATCCTAGCTACCTT
AAAGAGGCAGCCACCGCGTGGCTCTTGTCCTCTCTCCCCCTCCCTCTTCC
CCCCTCCTCTGGTCCAATTAATGGTCGTCACTCCTTTTACGTTCGTTCCC
GGTTAACAAGTTGATAACAAAAATGTGGGGGCAGCTGTCTTGGTGTCCTT
TTTACCACAGGTGCACACGTCCCAAGCTGCGAATGAATCGTTTGTGTGTG
GTTTTGATATCATGCCGTTACTCCGATGTGTCGTCTATGTATGTATGTGT
GCGGTATTTTCTTAACTAAATGAATGCTCTAATTCATGTTGTTTGTGCAA
GCCCAACACAGGGTAGTACCTACAAGGCTTTCGTTTAAACACACAACAAC
ATCGTCATCAACGGTTTCTTGACCACATACATACACACCACCCATCCCGT
TGACAAGGATGGATCCGTTGGCGAGAGGACGTGCATGGTACAAAACCAAA
GAAAGCGCGACAGATCAACATCATGTAGAACACAAAAGACGACCTTTAAA
ATTTTAGGCACATGAGAGAGCGGGTCAACTATTATTGCAGTACAGGGAGT
ACATGCATGCTAAAATTAACAGGTGACGGTGGGCGGTGTGGTTGTGCGGG
GACGAAGAGTTTTTCACCGCGCACGACATATATATACATACATGAACGCA
TGCAAACGGAGGGTTTCGTCTCTTGGTTTCTTCTCATCATCGTTTTGTCG
CCGAGCCCGCCGCAGAGGTTCGAGAAAAAAATAACTCTGTAGGACAAATG
TTTGTTTCATCACATCATAATTGGACTTCCACCTTTTTATTTCCGCGACT
CTTTCTTGAGTACAACAGCCGCAGCGACACTGCTGCTGCTGCCCTAGGTA
GGTGCACAGATATGCCCGTATCTGTTAGCATCATTGGGGCAGGCAGCGCT
CTGTCGACGGCCTGAAAAAGATCTTCTCGACACCTCCGGCCCTACAAGCG
ATTTGGACCGCAATAACAGGGTAATGCATATGCATGACATGATGAGTTAA
GATCTTTCTCGGTGGTCAGCGGTACGCAGCAGTATTGATTGGCGTAGCAT
GTTGAGTAGCCATCATCCCCGCCTCTCCCCTATCTAATAACTAACTCGAT
TCCTGTAGCTAGCTCCAAGCGTATCATCAAGAGGCTCATCGAATTGAAGC
GAAGCACCGACCTTCTTAACGACGACAGATTGTTGGAATATACTTCTTCC
ATTTCTTTGACGTTGGGTACGGGGTACAACAAAGACGTACCACCTACTCT
GTGTATGGAAAGAAGCGCTTGTACATAGTGTTTCTCCTTGCATTGGAGAC
ATGCTCTCGCCATCTGCTGCTCGCTCACACCGCCCCCTCGCGTGGCCTCT
CGCGCGTCTCCCTTGTTCTTTACAACAATAAACAGTTGTACATCGCGGGA
GGATCTCTGTACCTCTTGGGCGTCATCGGCATGGAGCTATTCACGGGCAC
CCCCCAGCTCGACACCACGAGCGCGCTGCCCCTGTGCGTCCTCGGTTTCG
GCGCGCTTAACACCTTCAGCTCGATCCCTATGGCTAATACCCGCAGCTGG
GTCTTGAGCGGGCTCTGCCTCTCGACGATGCAGCTCTGGAACGCTTGGTA
CGTCTCAGGAGCCTACCCGGCCTCGCTGGCCGCCGCGGACCCTTGGCTAG
CCGCCGCAAACCTCTCCTTGCTGGTGATCGCCTGCGTCGAGGCCGAGGAG
CAGATCCTGGCCGAAAAGCGGTGAGAACCCCCCCCCCTGGCTCATCCTTG
TGAAACGTAGATATAGCCTGGGCCGGCGAAAACCCCGCGTATCGAGCTCC
GTCCCGGCATTGTAGGGACGCGAGGTCTATGACCTAATGACTGCTTGTGT
TTACATGACTGCCCCCCCCCTCCTCCTTACAAGCGTCCTACCAAAATTTC
CCCTTGCGCGTGTGCGTGCGCAGTCAACGGGAAATCCTGGCGCAGAAGGG
CCGCCGCCGCACGGGGAAGATCCACATCCGCGGAGACGACCACGTGGAAG
GCGATGCCATGAACCGCGCGGGTTCTTACGGGTCCTTGATCTTCAACGCC
CCCCACCTCTACGCTACCCTCGTGGGAAGCGGCTGGGTCGAGCGTCTCGG
GGAGGCGTTCCCCGACAGTCCCGCCCTGCTTTTTCACGCCTACGTCGCCC
TCGCGGTAAGAGCACTCACCCCCCCAACCGCCCGCCCCTTTTTTTTGGCG
TGTTGCGTGTTTTCGGGGGAACAAAGCGGTACTCGTCGAGCCCTCCGTAA
TTGTCGCTGTCGTCGCTGTGCCGTTGTTTCGTGTCGTCACGTTGTTTCCG
GAGGTGTCGCTCGTGGACCCTTCGTGACAGTCGCTATCGCTGTTGTTGTC
GCTGCCGCTATTACCTGTCGGATGCCGCACTGTGACCCCCCCCCCCCATC
TTCCGTATCCCCATCTTTTTTTTCGTCAGACCTCGACCTCGATCGCGTTC
CTGGCGCCTACGCTCTACCAACGCCGCCTGATCGACGCCAAGATGATGTC
GTCCATGCAGTTCCTGACCTTGGCGCCCGCCGTCATGAGCCTCATCGACG
CCTCGGTGATGGGCGCGGCAGCGACGAACAACCCGATAGACATCTACCTG
GGTTTCCTGCACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9711:1237..5251-

>mRNA_Ecto-sp13_S_contig9711.21349.1 ID=mRNA_Ecto-sp13_S_contig9711.21349.1|Name=mRNA_Ecto-sp13_S_contig9711.21349.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1332bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9711:1237..5251- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTACCATCAGGCGTCGCGGCGGCCCTTCCCCGGCAGGGCTGCAGCA
GAGGGTCGGGCTGGCAGCGGCTGGCGTCGTTCTTCTCGCGGTTAGTTGGT
CGGCCAGGGCGTTTGTTCTCACTCCCCCCAGAGTTTTCACAACCGCGGGA
AAGTTCAACGCTGCTCTACCCGCCTCACCTCGTCAAGGATCCCGTTTCTT
CTCGATAGTGATGTCGGAAAAAAATAATGCTGCAGCCGCCGCGCCCGCCG
CCGCCACCGCCACGGCGACGGCGGTTCGAGCATCAGCACCAGCAGCAGGA
GGAGGAGGGGCGTCCACTGCTGCTGCAGCCGCTACCGCTACTGCTGCCGT
TCAACAGCAGGCCAACACGGCTATCGAGAACGTGGACGCCGCGGCTGCTG
TTGCACAGGAGGAGGTCAGGCAAGCGGGCGAAGAGGTCGTGAGGCTGACG
GCCACGACTGTTGTGAGGGCGCTGCCCGGGACCTGGCTGATCGCCGGCCT
GCCCAAGTGGATGCACATCCTGCGGCGAAGGATGATCACCAAGGAGGACT
GGATGCATCTCCACGCGTCGAGTGGGGCGTTGTACATCGCGGGAGGATCT
CTGTACCTCTTGGGCGTCATCGGCATGGAGCTATTCACGGGCACCCCCCA
GCTCGACACCACGAGCGCGCTGCCCCTGTGCGTCCTCGGTTTCGGCGCGC
TTAACACCTTCAGCTCGATCCCTATGGCTAATACCCGCAGCTGGGTCTTG
AGCGGGCTCTGCCTCTCGACGATGCAGCTCTGGAACGCTTGGTACGTCTC
AGGAGCCTACCCGGCCTCGCTGGCCGCCGCGGACCCTTGGCTAGCCGCCG
CAAACCTCTCCTTGCTGGTGATCGCCTGCGTCGAGGCCGAGGAGCAGATC
CTGGCCGAAAAGCGTCAACGGGAAATCCTGGCGCAGAAGGGCCGCCGCCG
CACGGGGAAGATCCACATCCGCGGAGACGACCACGTGGAAGGCGATGCCA
TGAACCGCGCGGGTTCTTACGGGTCCTTGATCTTCAACGCCCCCCACCTC
TACGCTACCCTCGTGGGAAGCGGCTGGGTCGAGCGTCTCGGGGAGGCGTT
CCCCGACAGTCCCGCCCTGCTTTTTCACGCCTACGTCGCCCTCGCGACCT
CGACCTCGATCGCGTTCCTGGCGCCTACGCTCTACCAACGCCGCCTGATC
GACGCCAAGATGATGTCGTCCATGCAGTTCCTGACCTTGGCGCCCGCCGT
CATGAGCCTCATCGACGCCTCGGTGATGGGCGCGGCAGCGACGAACAACC
CGATAGACATCTACCTGGGTTTCCTGCACTGA
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