prot_Ecto-sp13_S_contig97104.21348.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig97104.21348.1
Unique Nameprot_Ecto-sp13_S_contig97104.21348.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length82
Homology
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BLAST of mRNA_Ecto-sp13_S_contig97104.21348.1 vs. uniprot
Match: D7G5C9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 4.480e-29
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 0 
Query:    6 IQLQPNVCRCCL--LLQSEHPQNRISYLPETIGLATGLRTLNLQGNCLRDIPNGLCLLQILETLDLAQNMLVNVTHAV 81
            +Q+ P+    C+  L + +  +NRISYLPETIGLATGLR LNLQGNCLRDIPNGLCLLQ+LETLDLAQNMLVNV HAV
Sbjct:   60 LQMLPSELFLCVTQLEEVDASKNRISYLPETIGLATGLRKLNLQGNCLRDIPNGLCLLQVLETLDLAQNMLVNVMHAV 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig97104.21348.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5C9_ECTSI4.480e-2973.08Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 7..80
e-value: 6.8E-11
score: 43.7
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 63..81
score: 4.917
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 40..61
score: 8.582
NoneNo IPR availableSUPERFAMILY52075Outer arm dynein light chain 1coord: 25..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig97104contigEcto-sp13_S_contig97104:143..388 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig97104.21348.1mRNA_Ecto-sp13_S_contig97104.21348.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig97104 128..388 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig97104.21348.1 ID=prot_Ecto-sp13_S_contig97104.21348.1|Name=mRNA_Ecto-sp13_S_contig97104.21348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MYEKPIQLQPNVCRCCLLLQSEHPQNRISYLPETIGLATGLRTLNLQGNC
LRDIPNGLCLLQILETLDLAQNMLVNVTHAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt