mRNA_Ecto-sp13_S_contig97104.21348.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig97104.21348.1
Unique NamemRNA_Ecto-sp13_S_contig97104.21348.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig97104.21348.1 vs. uniprot
Match: D7G5C9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C9_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 3.870e-29
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:   31 IQLQPNVCRCCL--LLQSEHPQNRISYLPETIGLATGLRTLNLQGNCLRDIPNGLCLLQILETLDLAQNMLVNVTHAV 258
            +Q+ P+    C+  L + +  +NRISYLPETIGLATGLR LNLQGNCLRDIPNGLCLLQ+LETLDLAQNMLVNV HAV
Sbjct:   60 LQMLPSELFLCVTQLEEVDASKNRISYLPETIGLATGLRKLNLQGNCLRDIPNGLCLLQVLETLDLAQNMLVNVMHAV 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig97104.21348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5C9_ECTSI3.870e-2973.08Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig97104contigEcto-sp13_S_contig97104:128..388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score110.2
Seed ortholog evalue4.8e-22
Seed eggNOG ortholog2880.D7G5C9
Preferred nameLRRC59
Model size261
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005739,GO:0005759,GO:0005783,GO:0005789,GO:0009295,GO:0012505,GO:0016020,GO:0031967,GO:0031974,GO:0031975,GO:0031984,GO:0042175,GO:0042645,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0098827
Exons1
EggNOG free text desc.Leucine rich repeat
EggNOG OGsCOG4886@1,KOG0473@2759
Cds size246
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464234.8286514-UTR-Ecto-sp13_S_contig97104:127..1421681464234.8286514-UTR-Ecto-sp13_S_contig97104:127..142Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig97104 128..142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464234.8399956-CDS-Ecto-sp13_S_contig97104:142..3881681464234.8399956-CDS-Ecto-sp13_S_contig97104:142..388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig97104 143..388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig97104.21348.1prot_Ecto-sp13_S_contig97104.21348.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig97104 143..388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig97104.21348.1

>prot_Ecto-sp13_S_contig97104.21348.1 ID=prot_Ecto-sp13_S_contig97104.21348.1|Name=mRNA_Ecto-sp13_S_contig97104.21348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MYEKPIQLQPNVCRCCLLLQSEHPQNRISYLPETIGLATGLRTLNLQGNC
LRDIPNGLCLLQILETLDLAQNMLVNVTHAV*
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mRNA from alignment at Ecto-sp13_S_contig97104:128..388+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig97104.21348.1 ID=mRNA_Ecto-sp13_S_contig97104.21348.1|Name=mRNA_Ecto-sp13_S_contig97104.21348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97104:128..388+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATAGACGCAACCTACATGTATGAGAAACCGATACAATTGCAACCGAATGT
CTGTCGCTGTTGTCTTCTGCTTCAATCTGAACATCCACAGAACCGTATCT
CTTATCTTCCAGAAACAATCGGATTGGCGACCGGACTCCGAACACTCAAC
CTTCAGGGAAACTGTTTGCGAGACATTCCGAACGGTCTGTGTCTCCTACA
GATCCTCGAAACGCTGGATCTCGCGCAGAATATGCTGGTGAATGTAACGC
ATGCGGTATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig97104:128..388+

>mRNA_Ecto-sp13_S_contig97104.21348.1 ID=mRNA_Ecto-sp13_S_contig97104.21348.1|Name=mRNA_Ecto-sp13_S_contig97104.21348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97104:128..388+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATGAGAAACCGATACAATTGCAACCGAATGTCTGTCGCTGTTGTCT
TCTGCTTCAATCTGAACATCCACAGAACCGTATCTCTTATCTTCCAGAAA
CAATCGGATTGGCGACCGGACTCCGAACACTCAACCTTCAGGGAAACTGT
TTGCGAGACATTCCGAACGGTCTGTGTCTCCTACAGATCCTCGAAACGCT
GGATCTCGCGCAGAATATGCTGGTGAATGTAACGCATGCGGTATAG
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