prot_Ecto-sp13_S_contig97093.21346.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig97093.21346.1
Unique Nameprot_Ecto-sp13_S_contig97093.21346.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length48
Homology
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BLAST of mRNA_Ecto-sp13_S_contig97093.21346.1 vs. uniprot
Match: A0A6H5JMU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU7_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.610e-20
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 0 
Query:    1 MLIWTITTAFSGVFQSLLWLEKSSGSATERRLVWTMLVLSIAGMAGNV 48
            MLIWTITTAFSGVFQSLLWLE S GSA ER LVWTMLVLSIAGMAGN+
Sbjct:   96 MLIWTITTAFSGVFQSLLWLENSGGSAIERGLVWTMLVLSIAGMAGNI 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig97093.21346.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMU7_9PHAE4.610e-2089.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 48..48
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..11
score: 0.542

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig97093contigEcto-sp13_S_contig97093:18..161 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig97093.21346.1mRNA_Ecto-sp13_S_contig97093.21346.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig97093 6..161 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig97093.21346.1 ID=prot_Ecto-sp13_S_contig97093.21346.1|Name=mRNA_Ecto-sp13_S_contig97093.21346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MLIWTITTAFSGVFQSLLWLEKSSGSATERRLVWTMLVLSIAGMAGNV
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