mRNA_Ecto-sp13_S_contig97093.21346.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig97093.21346.1
Unique NamemRNA_Ecto-sp13_S_contig97093.21346.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig97093.21346.1 vs. uniprot
Match: A0A6H5JMU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 7.500e-23
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 YLRLMLIWTITTAFSGVFQSLLWLEKSSGSATERRLVWTMLVLSIAGMAGNV 156
            YLRLMLIWTITTAFSGVFQSLLWLE S GSA ER LVWTMLVLSIAGMAGN+
Sbjct:   92 YLRLMLIWTITTAFSGVFQSLLWLENSGGSAIERGLVWTMLVLSIAGMAGNI 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig97093.21346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMU7_9PHAE7.500e-2390.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig97093contigEcto-sp13_S_contig97093:6..161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464234.7446542-UTR-Ecto-sp13_S_contig97093:5..171681464234.7446542-UTR-Ecto-sp13_S_contig97093:5..17Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig97093 6..17 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464234.757186-CDS-Ecto-sp13_S_contig97093:17..1611681464234.757186-CDS-Ecto-sp13_S_contig97093:17..161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig97093 18..161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig97093.21346.1prot_Ecto-sp13_S_contig97093.21346.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig97093 18..161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig97093.21346.1

>prot_Ecto-sp13_S_contig97093.21346.1 ID=prot_Ecto-sp13_S_contig97093.21346.1|Name=mRNA_Ecto-sp13_S_contig97093.21346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MLIWTITTAFSGVFQSLLWLEKSSGSATERRLVWTMLVLSIAGMAGNV
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mRNA from alignment at Ecto-sp13_S_contig97093:6..161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig97093.21346.1 ID=mRNA_Ecto-sp13_S_contig97093.21346.1|Name=mRNA_Ecto-sp13_S_contig97093.21346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97093:6..161+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATTTGAGACTCATGCTGATCTGGACAATTACGACGGCCTTCAGCGGGGT
GTTCCAATCGCTTCTGTGGTTGGAAAAATCTAGTGGCTCTGCGACAGAGA
GACGGTTGGTCTGGACGATGCTGGTGCTCAGCATCGCAGGAATGGCTGGG
AATGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig97093:6..161+

>mRNA_Ecto-sp13_S_contig97093.21346.1 ID=mRNA_Ecto-sp13_S_contig97093.21346.1|Name=mRNA_Ecto-sp13_S_contig97093.21346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97093:6..161+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGATCTGGACAATTACGACGGCCTTCAGCGGGGTGTTCCAATCGCT
TCTGTGGTTGGAAAAATCTAGTGGCTCTGCGACAGAGAGACGGTTGGTCT
GGACGATGCTGGTGCTCAGCATCGCAGGAATGGCTGGGAATGTA
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