mRNA_Ecto-sp13_S_contig97041.21341.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig97041.21341.1
Unique NamemRNA_Ecto-sp13_S_contig97041.21341.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig97041.21341.1 vs. uniprot
Match: A2SMP4_METPP (Uncharacterized protein n=2 Tax=Methylibium TaxID=316612 RepID=A2SMP4_METPP)

HSP 1 Score: 56.2 bits (134), Expect = 4.230e-8
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   10 IPKDRPVLGSDLHALKNALGLTVDDARWVFGISMNRWGDIVQK 138
            IPK+RPVLG DL A++   GL V DA W+FG+S+ RW  IV++
Sbjct:    4 IPKNRPVLGKDLDAVRTQYGLLVSDACWLFGLSITRWMQIVKR 46
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig97041.21341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A2SMP4_METPP4.230e-855.81Uncharacterized protein n=2 Tax=Methylibium TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig97041contigEcto-sp13_S_contig97041:384..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size141
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464234.4902594-CDS-Ecto-sp13_S_contig97041:383..5241681464234.4902594-CDS-Ecto-sp13_S_contig97041:383..524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig97041 384..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig97041.21341.1prot_Ecto-sp13_S_contig97041.21341.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig97041 384..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig97041.21341.1

>prot_Ecto-sp13_S_contig97041.21341.1 ID=prot_Ecto-sp13_S_contig97041.21341.1|Name=mRNA_Ecto-sp13_S_contig97041.21341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
IIDIPKDRPVLGSDLHALKNALGLTVDDARWVFGISMNRWGDIVQKN
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mRNA from alignment at Ecto-sp13_S_contig97041:384..524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig97041.21341.1 ID=mRNA_Ecto-sp13_S_contig97041.21341.1|Name=mRNA_Ecto-sp13_S_contig97041.21341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97041:384..524+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTATCGATATTCCAAAGGATCGTCCCGTTCTCGGGAGTGATTTGCATGC
GCTGAAGAATGCCCTGGGTTTAACCGTGGACGATGCGCGATGGGTGTTCG
GTATCTCCATGAACCGGTGGGGCGATATTGTTCAAAAGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig97041:384..524+

>mRNA_Ecto-sp13_S_contig97041.21341.1 ID=mRNA_Ecto-sp13_S_contig97041.21341.1|Name=mRNA_Ecto-sp13_S_contig97041.21341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97041:384..524+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTATCGATATTCCAAAGGATCGTCCCGTTCTCGGGAGTGATTTGCATGC
GCTGAAGAATGCCCTGGGTTTAACCGTGGACGATGCGCGATGGGTGTTCG
GTATCTCCATGAACCGGTGGGGCGATATTGTTCAAAAGAAC
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