mRNA_Ecto-sp13_S_contig12582.2134.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12582.2134.1
Unique NamemRNA_Ecto-sp13_S_contig12582.2134.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12582.2134.1 vs. uniprot
Match: D7FTV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV5_ECTSI)

HSP 1 Score: 706 bits (1822), Expect = 4.870e-247
Identity = 379/491 (77.19%), Postives = 407/491 (82.89%), Query Frame = 3
Query:    3 MRGEYVGTVGTTLLLVGEFVAKAGAAGSVDPMMHMMRNLFTTTYTDGDACPDEDDACLASSSCLACNDAYMAAFSDCAASLTSTSTCDDLAEAMCCAAEGCEDNEEFADIMGCINGDLGCGVIDIGDCAGGGSPAVSGSDTMTDSTSTTETDCPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEDAVCCAADGCEDNEALNDLLTCINAESTCSIDIGDCAADGSRAISGSSTTTDTDGTAIDTTTDSPYTSMTTSETDCPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEEAVCCAADGCEDNEALNDLLTCINAESTCSIDIGDCAADGSRAISGSSTTTDTDGTAIDTTTDSPYTSMTTSETD---------------------CPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEEAVCCAADGCEDNEALNDLLTCINAESTCSIDIGDCAADGSRAIS 1412
            MRGE+VG VGTTLLLVG FVAKAGAAGS DPM+HMMRNLFTTTYTDGDACP ED ACLAS+SCLACN+AY+AAFS CAASLTSTSTCDDL +AMCCA EGCEDNEEFADIMGCIN D+GCG ID+GDC    S A+SGSDT TDSTSTTETDCPTEISACNAD ECVTCTQSYVDAVEGCFASATGSTCDDVE++VCCA DGCEDNEALNDLL CINAESTCSIDIGDCA DGSR IS S TTTDTD   IDTTTDSPYTSMTTSETDCPTEISACNAD ECVTCTQSYV+AV+GCFA+ TGSTCDDVEEAVCCA DGCEDNEAL+DLLTCIN +STC +DI DCAADGSR ISGS TTTDTD          P T  TT+                        CPTE++AC+ADSEC+ CT+SYV AVEGC A+ TGSTCD +EEAVCCA DGCEDN+ALNDLL C+NA+ TC IDIGDC  D S AIS
Sbjct:    1 MRGEHVGKVGTTLLLVGGFVAKAGAAGSFDPMVHMMRNLFTTTYTDGDACPAEDAACLASTSCLACNEAYIAAFSGCAASLTSTSTCDDLVDAMCCAVEGCEDNEEFADIMGCINADIGCGYIDLGDC----STAISGSDTTTDSTSTTETDCPTEISACNADDECVTCTQSYVDAVEGCFASATGSTCDDVEESVCCAVDGCEDNEALNDLLVCINAESTCSIDIGDCAEDGSRGISDSDTTTDTDDAVIDTTTDSPYTSMTTSETDCPTEISACNADDECVTCTQSYVEAVDGCFAAVTGSTCDDVEEAVCCAVDGCEDNEALSDLLTCINEDSTCQVDIEDCAADGSRDISGSDTTTDTDPAIF------PSTPTTTTSXXXXXXXXPGGTEXXXXXXXXXXCPTELAACSADSECIACTESYVAAVEGCLAAVTGSTCDGIEEAVCCAVDGCEDNDALNDLLGCLNAD-TCPIDIGDC--DSSVAIS 478          
BLAST of mRNA_Ecto-sp13_S_contig12582.2134.1 vs. uniprot
Match: D7FTV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV3_ECTSI)

HSP 1 Score: 568 bits (1464), Expect = 4.060e-192
Identity = 365/615 (59.35%), Postives = 408/615 (66.34%), Query Frame = 3
Query:    3 MRGEYVGTVGTTLLLVGEFVAKAGAAGSVDPMMHMMRNLFTTTYTDGDACPDEDDACLASSSCLACNDAYMAAFSDCAASLTSTSTCDDLAEAMCCAAEGCEDNEEFADIMGCINGDLGCGVIDIGDCAGGGSPAVSGSDTMTDSTSTTETDCPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEDAVCCAADGCEDNEALNDLLTCINAESTCSIDIGDCAADGSRAISGSSTTTDTDGTAIDTT------TDSPYTSMTTSETDCPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEEAVCCAADGCEDNEALNDLLTCINAESTCSIDIGDCAADGSRAISGSSTTTDTDGTAIDTT------TDSPYTSMTTSETDCPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEEAVCCAADGCEDNEALNDLLTCINAESTCSIDIGDCAADGSRAISGSSTTTDTDGTAIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYDTSDPIPFPVGDD-EKXXXXXXXXXXXXXESSAT-SAAAMGGSTIVWLIAAAAPGLWRRFQ 1805
            MRGE+ GT   TLLLVG FVAKAGA GS  PM HMMR+L    Y+    CPDE DAC+AS+SCL+C++ Y   F  C +S +S STCDD  +AMCCAAEGCEDNEEFAD MGC+  DLGCGVIDIGDC GG S                         ACN D EC+ CTQSYVD VEGCFASATGSTCDD+E+AVCCA DGCEDN ALNDLL CIN++S CS+DIGDCA+DGSRAIS S TTTDTD     TT      TD+ YTSMT  ET+C TE+ ACN D+ECV C  SY   VEGC  SA G+TCDD+E AVCCA DGCEDN+ LNDLL CINA++ CS D+GDCA+DGSRAIS S  TTDTD     TT      TD+ YTSM     +C TE+ ACN D+ECV C  SY   VEGC  SA G+TCDD+E AVCCA DGCEDN+ LNDLL CINA++ CS D+GDCA+ GS AISGS TTTDT                                      XXXXXXXXXXXXXXXXXXX     G  T    P P+GDD E     XXXXX    ESSAT SAAA G S +VWLIAAAAP LWRRFQ
Sbjct:    1 MRGEHGGTFAKTLLLVGGFVAKAGAEGSNIPMDHMMRHL----YSSSTVCPDEVDACVASTSCLSCDETYFENFDGCFSSFSSASTCDDFVDAMCCAAEGCEDNEEFADFMGCLYADLGCGVIDIGDCPGG-SXXXXXXXXXXXXXXXXXXXXXXXXXACNVDDECIFCTQSYVDTVEGCFASATGSTCDDLEEAVCCAVDGCEDNVALNDLLACINSDSPCSVDIGDCASDGSRAISDSDTTTDTDSAGYLTTSTXXXXTDTIYTSMTXXETECATEVVACNDDTECVDCFTSYAALVEGCLVSAGGTTCDDLEGAVCCAVDGCEDNDGLNDLLACINADTGCSFDLGDCASDGSRAISDSDATTDTDSAGYLTTSTTTSTTDTIYTSMXXXXXECATEVVACNDDTECVDCVTSYAALVEGCLVSAGGTTCDDLEGAVCCAVDGCEDNDGLNDLLACINADTGCSFDLGDCASGGSGAISGSDTTTDT-----------------------------------GSPXXXXXXXXXXXXXXXXXXXTAADDGESTGS-APLPIGDDDEDKKDAXXXXXPTNTESSATRSAAAKGSSAVVWLIAAAAPSLWRRFQ 574          
BLAST of mRNA_Ecto-sp13_S_contig12582.2134.1 vs. uniprot
Match: A0A6H5JWN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN7_9PHAE)

HSP 1 Score: 520 bits (1339), Expect = 2.210e-171
Identity = 301/517 (58.22%), Postives = 351/517 (67.89%), Query Frame = 3
Query:    3 MRGEYVGTVGTTLLLVGEFVAKAGAAGSVDPMMHMMRNLFTTTYTDGDACPDEDDACLASSSCLACNDAYMAAFSDCAASLTSTSTCDDLAEAMCCAAEGCEDNEEFADIMGCINGDLGCGVIDIGDCAGGGSPAVSGSDTMTDSTSTTETDCPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEDAVCCAADGCEDNEALNDLLTCINAESTCSIDIGDCAADGSRAISGSSTTTDTDGTA------IDTTTDSPYTSMTTSETDCPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEEAVCCAADGCEDNEALNDLL-------------TCINAESTCSIDIGDCAADGSRAISGSSTTTDTDGTA------IDTTTDSPYTSMTTSETDCPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEEAVCCAADGCEDNEALNDLL-------------TCINAESTCSIDIGDCAADGSRAISGSSTTTDTD 1439
            MR E+ GTV   LLLVG FVAKA A GS  PM H+MR+L++++      C DE DAC+AS+SC++C++ ++  F  C AS +S STCDD  +A+CC  EGCEDNEE+ADI+GC+  DLGCGVIDIGDC GG S A                     +SAC+AD+EC+ CTQ+YVD  EGCFASATGSTCDD+E+AVCCA DGCEDN ALNDLL C+N++S CSIDIGDCA+DGSR   GS TTTDTD         I  TTDS Y SMTTSET+C  E+ ACN D+ECV C  SY   VEGC  SA G+TCDD+E AVCCA DGCEDN+ALNDLL              C  A++ CSIDIGDCA+DGSR   GS TTTDTD         I  TTDS Y SMTTSET+C  E+ ACN D+ECV C  SY   VEGC  SA G+TCDD+E AVCCA DGCEDN+ALNDLL              C  A++ CSIDIGDCA+DGSR   GS TTTDTD
Sbjct:    1 MREEHGGTVAKALLLVGGFVAKACAEGSNIPMDHIMRHLYSSSAV----CADEADACIASTSCVSCDETFLGNFDGCFASFSSASTCDDFFDALCCTVEGCEDNEEYADIVGCVYADLGCGVIDIGDCPGG-SGATDXXXXXXXXXXXXXXXXXXXVSACSADNECLFCTQAYVDTAEGCFASATGSTCDDLEEAVCCAVDGCEDNVALNDLLACLNSDSPCSIDIGDCASDGSRGNYGSDTTTDTDSAGYLTTPTITPTTDSMYPSMTTSETECAIEVEACNDDTECVDCATSYAALVEGCIESAGGTTCDDLEGAVCCAVDGCEDNDALNDLLGAFLVVLCLRKSLACSIADTGCSIDIGDCASDGSRGNYGSDTTTDTDSAGYLTTPTITPTTDSMYPSMTTSETECAIEVEACNDDTECVDCATSYAALVEGCIESAGGTTCDDLEGAVCCAVDGCEDNDALNDLLGAFLVVLCLRKSLACSIADTGCSIDIGDCASDGSRGNYGSDTTTDTD 512          
BLAST of mRNA_Ecto-sp13_S_contig12582.2134.1 vs. uniprot
Match: D7FTV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV4_ECTSI)

HSP 1 Score: 436 bits (1121), Expect = 8.460e-144
Identity = 223/249 (89.56%), Postives = 232/249 (93.17%), Query Frame = 3
Query:    3 MRGEYVGTVGTTLLLVGEFVAKAGAAGSVDPMMHMMRNLFTTTYTDGDACPDEDDACLASSSCLACNDAYMAAFSDCAASLTSTSTCDDLAEAMCCAAEGCEDNEEFADIMGCINGDLGCGVIDIGDCAGGGSPAVSGSDTMTDSTSTTETDCPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEDAVCCAADGCEDNEALNDLLTCINAESTCSIDIGDCAADGSRAISGSSTTTDTDGT 749
            MRGE+VGTVGTTLLLVG FVAKAGAAGS DPMMHMMRNLFTTTYTDGDACP+EDDAC+AS+SCLACN+AYMAAFSDCAASLTSTSTCDDLAEAMCCAAEGCEDNEEFADIMGCINGDLGCGVIDIGDCAGGGS A+SGSDT         TDCPTEISACNAD ECVTCTQSYVDAVEGCFASATGSTCDDVE++VCCA DGCEDNEALNDLL CINAESTCSIDIGDC ADGSRAISGS TTT+TDGT
Sbjct:   10 MRGEHVGTVGTTLLLVGGFVAKAGAAGSFDPMMHMMRNLFTTTYTDGDACPNEDDACVASASCLACNEAYMAAFSDCAASLTSTSTCDDLAEAMCCAAEGCEDNEEFADIMGCINGDLGCGVIDIGDCAGGGSTAISGSDTTXXXXXXXXTDCPTEISACNADDECVTCTQSYVDAVEGCFASATGSTCDDVEESVCCAVDGCEDNEALNDLLACINAESTCSIDIGDCEADGSRAISGSDTTTETDGT 258          
BLAST of mRNA_Ecto-sp13_S_contig12582.2134.1 vs. uniprot
Match: A0A6H5K6K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K1_9PHAE)

HSP 1 Score: 421 bits (1083), Expect = 2.700e-136
Identity = 221/252 (87.70%), Postives = 226/252 (89.68%), Query Frame = 3
Query:    3 MRGEYVGTVGTTLLLVGEFVAKAGAAGSVDPMMHMMRNLFTTTYTDGDACPDEDDACLASSSCLACNDAYMAAFSDCAASLTSTSTCDDLAEAMCCAAEGCEDNEEFADIMGCINGDLGCGVIDIGDCAGGGSPAVSGSDTMTDSTSTTETDCPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEDAVCCAADGCEDNEALNDLLTCINAESTCSIDIGDCAADGSRAISGSSTTTDTDGTAID 758
            M GE+VGTVGTTLLLVG FVAKAGAAGSVDPMMHMMRNLFTTTYTDGDACP ED AC+AS+SCLACNDAYMAAFS CAASLTST TCDDLAEAMCCAAEGCEDNEEFADIMGCINGDLGCGVIDIGDCAGGGS A+SGS             CPTEISACNADSECVTCTQSYVDAVEGCF SATGSTCDDVE+AVCCA DGCEDNEALNDLL CINAESTCSIDIGDCAADGSRAISGS TTT TDGTA D
Sbjct:    1 MLGEHVGTVGTTLLLVGGFVAKAGAAGSVDPMMHMMRNLFTTTYTDGDACPAEDAACVASASCLACNDAYMAAFSGCAASLTSTFTCDDLAEAMCCAAEGCEDNEEFADIMGCINGDLGCGVIDIGDCAGGGSTAISGSXXXXXXXXXXXXXCPTEISACNADSECVTCTQSYVDAVEGCFESATGSTCDDVEEAVCCAVDGCEDNEALNDLLACINAESTCSIDIGDCAADGSRAISGSGTTTYTDGTASD 252          
BLAST of mRNA_Ecto-sp13_S_contig12582.2134.1 vs. uniprot
Match: D7FK67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK67_ECTSI)

HSP 1 Score: 404 bits (1038), Expect = 3.090e-130
Identity = 270/468 (57.69%), Postives = 306/468 (65.38%), Query Frame = 3
Query:  444 TTETDCPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEDAVCCAADGCEDNEALNDLLTCINAESTCSIDIGDCAADGSRAISGSSTTTDTDGTAIDTT------TDSPYTSMTTSETDCPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEEAVCCAADGCEDNEALNDLLTCINAESTCSIDIGDCAADGSRAISGSSTTTDTDGTAIDTTTDSP------YTSMTTSETDCPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEEAVCCAADGCEDNEALNDLLTCINAESTCSIDIGDCAADGSRAISGSSTTTDTDGTAIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYDTSDPIPFPVGDD-EKXXXXXXXXXXXXXESSAT-SAAAMGGSTIVWLIAAAAPGLWRRFQ 1805
            T+ET+C TE+ ACN D+ECV C  SY   VEGC  SA G+TCDD+E AVCCA DGCEDN+ LNDLL CINA++ CS D+GDCA+DGSRAIS S  TTDTD     TT      TD+ YTSM     +C TE+ ACN D+ECV C  SY   VEGC  SA G+TCDD+E AVCCA DGCEDN+ LNDLL CINA++ CS D GDCA+ GSRAIS S  TTDTD     TT+ +       YTSM  SET+C TE+ ACN D+ECV C  SY   VEGC  SA G+TCDD+E AVCCA DGCEDN+ L+DLL CINA++ CS D+GDCA+ GS AISGS TTTDT                                      XXXXXXXXXXXXXXXXXXX     G  T    P P+GDD E     XXXXX    ESSAT SAAA G S +VWLIAAAAP LWRRFQ
Sbjct:    3 TSETECATEVVACNDDTECVDCFTSYAALVEGCLVSAGGTTCDDLEGAVCCAVDGCEDNDGLNDLLACINADTGCSFDLGDCASDGSRAISDSDATTDTDSAGYLTTSTTTSTTDTIYTSMXXXXXECATEVVACNDDTECVDCVTSYAALVEGCLVSAGGTTCDDLEGAVCCAVDGCEDNDGLNDLLACINADTGCSFDFGDCASGGSRAISDSDATTDTDSAGYLTTSTTXXXXXTIYTSMXXSETECATEVEACNDDTECVDCFTSYAALVEGCLVSAGGTTCDDLEGAVCCAVDGCEDNDGLSDLLACINADTGCSFDLGDCASGGSGAISGSDTTTDT-----------------------------------GSPXXXXXXXXXXXXXXXXXXXTAADDGESTGS-APLPIGDDDEDKKDAXXXXXPTNTESSATRSAAAKGSSAVVWLIAAAAPSLWRRFQ 434          
BLAST of mRNA_Ecto-sp13_S_contig12582.2134.1 vs. uniprot
Match: D7FTV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV6_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 1.890e-62
Identity = 213/600 (35.50%), Postives = 281/600 (46.83%), Query Frame = 3
Query:    3 MRGEYVGTVGTTLLLVGEFVAKAGAAGSV-DPMMHMMRNLFTT-TYTDGDACPDEDDACLASSSCLACNDAYMAAFSDCAASLTSTS--TCDDLAEAMCCAAE-GCEDNEEFADIMGCING-----DLGCGVIDIGDCAGGGSPAVSGSDTMTDSTSTTETD-----------------------------------------------------------CPTEISACNADSECVTCTQSYVDAVEGCFAS----ATGSTCDDVEDAVCCAADGCEDNEALNDLLTC-INAESTCSIDIGDCAADGSRAISGSSTTTD-----------------------------TDGTAIDTTTDSPYTSMTTSETDCPTEISACNADSECVTCTQSYVDAVEGCFAS----ATGSTCDDVEEAVCCAADGCEDNEALNDLLTC-INAESTCSIDIGDCAADGSRAISGSSTTTDTDGTAID------------TTTDSPYTSMTTSETD----CPTEISACNADSECVTCTQSYVDAVEGCFASATGS---TCDDVEEAVCCAADG---CEDNEALNDLLTCINAESTCSIDIGDCAADGSRAIS 1412
            MRG     V T LL+V   VA+A A+  V DP  HMMR L TT   T    C  E   C+A  +C  C++AY+AAF  CA S TS+S  TC++    +CCA E  C DN E  +I+ C  G     D GC   D+ DC+  GS A+SGSDT T+STST +T                                                            CP E  AC  DS C  C QS+ D+   C AS    A+ + CD +ED  CCA DGC+ NE +     C   A+S C++++G CA DG+RAISGS T+T+                             T G   D+      T+ +T+ T CP E  AC  DS C  C QS+ D+   C  S    A+ + CD +E+  CCA DGC+ NE +     C   A+S C++++G CA DGSRAISGS T+TD+  T               TTT S ++S + S T+    C  E  AC AD  C+ C  + + + E C  S   S   TCD+ +EA CCA +G   CE+N  L  L  C  A   C+  + DC  DGSR+ S
Sbjct:    1 MRGN---DVTTALLVVAGCVAEAWASSEVVDPTAHMMRGLLTTGATTSSSVCAAEAATCIADDACTECHNAYLAAFDVCAGSSTSSSSPTCEEFVAVVCCAIEQACSDNAEHMEILDCAYGYIFGYDTGC---DLADCSEDGSRAISGSDTPTESTSTIDTTTPGFMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTFTTYTXXXXXXXXXXXXXXXXXWCPNEYLACVGDSACAECYQSFWDSWLTCDASVISVASSNGCDVLEDIACCAVDGCQGNELMVAYFDCAFAADSECAVEVGACAEDGNRAISGSDTSTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPGFFSDS-----GTTTSTTSTWCPNEYLACVEDSACADCYQSFWDSWLTCDTSVISVASSNGCDVLEDIACCAVDGCQGNELMVAYFDCAFAADSECAVEVGACAEDGSRAISGSDTSTDSISTTDTXXXGNSSVVFPTTTTTSAFSSDSVSMTNDTAICVAENDACTADPTCLACAGAILSSQEVCQGSDFDSETATCDEKQEANCCALEGGTDCENNVLLGALYDCSMAAEGCTGALTDCL-DGSRSAS 588          
BLAST of mRNA_Ecto-sp13_S_contig12582.2134.1 vs. uniprot
Match: A0A6H5JW24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW24_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 3.890e-50
Identity = 128/212 (60.38%), Postives = 141/212 (66.51%), Query Frame = 3
Query:  654 AESTCSIDIGDCAADGSRAISGSSTTTDTDGTA----------------IDTTTDSPYTSMTTSETDCPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEEAVCCAADGCEDNEALNDLLTCINAESTCSIDIGDCAADGSRAISGSSTTTDTD----------------GTAIDTTTDSPYTSMTTSETDCPTEISACNADSE 1193
            A++ CS+DIGDCA  GS AISGS TTTDTD T                 IDTTT+S YTSMTTSE  C  E+ AC AD EC+ CTQSYVD ++GCFASATGS CDD+E AVCCA DGCED +ALND L CINA+STC IDIGDCA DGS AI  S TTTDT+                G  IDTTTDS Y SMT SET+   EISACN D E
Sbjct: 1141 ADTGCSVDIGDCATAGSVAISGSDTTTDTDSTGYLTSSAXXXXXXXGFPIDTTTNSTYTSMTTSE--CAIELEACKADGECIVCTQSYVDTMDGCFASATGSICDDLEGAVCCAVDGCEDIDALNDHLACINADSTCFIDIGDCAMDGSAAIFISDTTTDTNSAGYLTTPXXTSTTDTGPPIDTTTDSIYKSMTASETERAIEISACNEDDE 1350          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12582.2134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FTV5_ECTSI4.870e-24777.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTV3_ECTSI4.060e-19259.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWN7_9PHAE2.210e-17158.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTV4_ECTSI8.460e-14489.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6K1_9PHAE2.700e-13687.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK67_ECTSI3.090e-13057.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTV6_ECTSI1.890e-6235.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JW24_9PHAE3.890e-5060.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12582contigEcto-sp13_S_contig12582:63..3945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2393
Hectar predicted targeting categorysignal peptide
Exons5
Cds size1806
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12582.2134.1prot_Ecto-sp13_S_contig12582.2134.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12582 648..3943 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462670.9810023-UTR-Ecto-sp13_S_contig12582:62..6471681462670.9810023-UTR-Ecto-sp13_S_contig12582:62..647Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12582 63..647 -
1681462671.052288-UTR-Ecto-sp13_S_contig12582:3943..39451681462671.052288-UTR-Ecto-sp13_S_contig12582:3943..3945Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12582 3944..3945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462670.989961-CDS-Ecto-sp13_S_contig12582:647..11171681462670.989961-CDS-Ecto-sp13_S_contig12582:647..1117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12582 648..1117 -
1681462670.9996543-CDS-Ecto-sp13_S_contig12582:1666..20141681462670.9996543-CDS-Ecto-sp13_S_contig12582:1666..2014Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12582 1667..2014 -
1681462671.0125108-CDS-Ecto-sp13_S_contig12582:2336..26841681462671.0125108-CDS-Ecto-sp13_S_contig12582:2336..2684Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12582 2337..2684 -
1681462671.0311823-CDS-Ecto-sp13_S_contig12582:3002..33081681462671.0311823-CDS-Ecto-sp13_S_contig12582:3002..3308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12582 3003..3308 -
1681462671.0422838-CDS-Ecto-sp13_S_contig12582:3609..39431681462671.0422838-CDS-Ecto-sp13_S_contig12582:3609..3943Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12582 3610..3943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12582.2134.1

>prot_Ecto-sp13_S_contig12582.2134.1 ID=prot_Ecto-sp13_S_contig12582.2134.1|Name=mRNA_Ecto-sp13_S_contig12582.2134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=602bp
MRGEYVGTVGTTLLLVGEFVAKAGAAGSVDPMMHMMRNLFTTTYTDGDAC
PDEDDACLASSSCLACNDAYMAAFSDCAASLTSTSTCDDLAEAMCCAAEG
CEDNEEFADIMGCINGDLGCGVIDIGDCAGGGSPAVSGSDTMTDSTSTTE
TDCPTEISACNADSECVTCTQSYVDAVEGCFASATGSTCDDVEDAVCCAA
DGCEDNEALNDLLTCINAESTCSIDIGDCAADGSRAISGSSTTTDTDGTA
IDTTTDSPYTSMTTSETDCPTEISACNADSECVTCTQSYVDAVEGCFASA
TGSTCDDVEEAVCCAADGCEDNEALNDLLTCINAESTCSIDIGDCAADGS
RAISGSSTTTDTDGTAIDTTTDSPYTSMTTSETDCPTEISACNADSECVT
CTQSYVDAVEGCFASATGSTCDDVEEAVCCAADGCEDNEALNDLLTCINA
ESTCSIDIGDCAADGSRAISGSSTTTDTDGTAIDTTTDTDGTASDTTTDT
EDTASDTTTDTDGTTSDSTTETDGTASDTVTDTDGAAADDGYDTSDPIPF
PVGDDEKDEDSDADADAANAESSATSAAAMGGSTIVWLIAAAAPGLWRRF
Q*
back to top

mRNA from alignment at Ecto-sp13_S_contig12582:63..3945-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12582.2134.1 ID=mRNA_Ecto-sp13_S_contig12582.2134.1|Name=mRNA_Ecto-sp13_S_contig12582.2134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3883bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12582:63..3945- (Ectocarpus species13 EcNAP12_S_4_19m)
CCATGCGGGGAGAATATGTTGGAACAGTCGGCACCACCCTTCTTCTCGTC GGGGAGTTCGTGGCCAAGGCGGGTGCCGCAGGCTCTGTTGACCCGATGAT GCACATGATGCGAAACTTGTTCACCACCACTTACACCGATGGAGATGCCT GCCCCGATGAAGATGATGCCTGCCTTGCGTCTTCCAGTTGCTTGGCTTGC AACGACGCCTACATGGCTGCTTTTTCGGATTGCGCGGCTTCGTTGACGAG CACCTCCACGTGCGATGACCTTGCCGAAGCCATGTGCTGTGCGGCGGAAG GCTGCGAGGACAACGAGGAATTTGCCGACATCATGGGTACGTGAACGACA ATTGCCTCTCCTCCGTGTTTTCGGCAACGAGAACTCCGTGATAAGAATAT ACAACAAGTTCAAACTTGCATCGTTTCTACGCAGCAGCACGGGTTTCAAG CCACCTCGCGAGTTTTCGGTGATATTTTCTCGGGTCTTCTGTCAAAAGGC TTCAGTGACAAGCAATGTGCGATCCAAACGGTTTCGTGTTCTTCAGCAGG ATGGGTCGCGACGTAAAGTTTGTGACTCGTGCAGTGCACCTCTCTCGCGT TTAACGCTTCTACCCCGCTTGGTATTTCATCGGGCAGGCTGCATTAATGG GGACCTTGGTTGCGGAGTCATCGACATCGGTGATTGTGCAGGAGGCGGGA GCCCGGCTGTTTCCGGGTCCGACACCATGACGGACTCCACATCTACAACC GAGACCGACTGTCCTACCGAAATCTCGGCGTGTAACGCGGATTCGGAGTG CGTAACATGCACCCAATCTTATGTTGACGCCGTGGAGGGATGCTTTGCTT CAGCGACTGGGTCCACTTGCGACGATGTCGAAGACGCTGTGTGCTGTGCG GCGGATGGCTGTGAGGACAACGAAGCGCTCAACGATCTCTTAAGTGCGTT CCTGGTTGGCTTGTCTGTGTCTCATATCTGGGATAGAGACGACGCATGTT TGTCAAATGCGTGACACCTTGGGCTTGCAGAGCCTTCGACCTGTTCCCGT GATCGTCACGTTTGGGTGCTTTGTAGCCGGCGGCCGGAATAGATCGGAGC GGGCCAGAAATGGATGCCAGTAACCCTCCGCAGCAGTGCTGGCGTTTCGC TCACGTCTCGGTATGTCTTCCAACCGTTGCGCGAACACCATGATCTTGTA ACTTTAAGACTAGTGCCGTTTTCCTCCCTCGCGACACTCGCGCTACTTGT CCACCGACCAGCCTGCATCAATGCGGAATCTACATGCTCCATCGATATTG GAGATTGTGCAGCGGATGGCAGCAGGGCCATTTCTGGCTCCAGCACCACC ACCGACACGGATGGTACCGCCATCGATACTACCACCGACTCTCCCTATAC CTCGATGACGACGAGCGAGACCGACTGCCCCACCGAAATCTCGGCGTGTA ACGCGGATTCGGAGTGCGTAACATGCACCCAGTCGTATGTTGACGCCGTG GAGGGATGCTTTGCTTCAGCGACTGGGTCCACTTGCGACGATGTCGAAGA AGCTGTCTGCTGTGCGGCGGATGGCTGTGAGGACAACGAAGCGCTCAACG ATCTCTTAAGTGCGTTCCTGGTTGGCTTGTCTGTGTCTCAGACGCATCTG GGATATAGACGGCGCATGTTTGTCAAATGCGCGACACCTTGAACTTGCAG AGCCTTCGACCTGCTCCCGTGATCGTCACGTTTGGATACTTTGTAGCCGG CGGCCGGAATAGATCGGAGCGGGCCAGAAATGGATGCCAGTAACCCTCCG CAGCAGTGCTGGCGTTTCACTCACGTCTCGGTATGTCTTCCAACCGTTGC GCGAACACCATGATCTTGTAACTTTAAGACTAGTGCCGTTTTCCTCCCTC GCGACACTCGCGCTACTTGTCCACCGACCAGCCTGCATCAATGCGGAATC TACATGCTCCATCGATATTGGAGATTGTGCAGCGGATGGCAGCAGGGCCA TTTCTGGCTCCAGCACCACCACCGACACGGATGGTACCGCCATCGATACT ACCACCGACTCTCCCTATACCTCGATGACGACGAGCGAGACCGACTGCCC CACCGAAATCTCGGCGTGTAACGCGGATTCGGAGTGCGTAACATGCACCC AGTCGTATGTTGACGCCGTGGAGGGATGCTTTGCTTCAGCGACTGGGTCC ACTTGCGACGATGTCGAAGAAGCTGTCTGCTGTGCGGCGGATGGCTGTGA GGACAACGAAGCGCTCAACGATCTCTTAAGTGCGTTCCTGGTTGGCTTGT CTGTGTCTCAGACGCATCTGGGATATAGACGGCGCATGTTTGTCAAATGC GCGACACCTTGAACTTGCAGAGCCTTCGACCTGCTCCCGTGATCGTCACG TTTGGGTACTTTGTAGCCGGCGGCCGGAATAGATCGGAGCGGGCCAGAAA TGGATGCCAGTAACCCTCCGCAGCAGTGCTGGCGTTTCACTCACGTCTCG GTATGTCTTCCAACCGTTGCGCGAACACCATGATCTTGTAACTTTAAGAC TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNGGAATAGATCGGAGCGGGCCAGAAATGGATGCCAGTAACCCTCCGCAG CAGTGCTGGCGTTTCACTCACGTCTCGGTATGTCTTCCAACCGTTGCGCG AACACCATGATCTTGTAACTTTAAGACTAATGCCGTTTTCCTCCCTCGCG ACACTCGCGCCACTTGTCCACCGGGCAGCCTGCATCAATGCGGAGTCTAC ATGCTCCATCGACATTGGAGATTGTGCAGCGGATGGCAGCAGGGCCATTT CTGGCTCCAGCACCACCACCGACACTGATGGTACCGCCATCGATACTACC ACCGACACCGATGGTACCGCCAGCGATACCACCACCGACACCGAAGATAC CGCCAGCGATACTACCACCGACACCGATGGTACCACCAGCGATAGTACTA CCGAAACCGATGGTACCGCCAGCGATACTGTCACCGACACCGATGGTGCC GCCGCTGACGACGGCTACGACACCAGCGACCCCATCCCTTTCCCAGTTGG AGACGACGAGAAAGATGAAGACTCTGATGCAGACGCGGACGCGGCCAACG CCGAGTCATCAGCCACTTCCGCTGCGGCAATGGGAGGTTCCACGATTGTC TGGCTGATTGCCGCCGCTGCACCCGGCCTGTGGCGCCGGTTCCAGTAACC CAAGCCTATGTACCACTTTTTCCAACGTGACGGGATGTAGTTGTAGACAA AATCGAAACGTTCGTCCTTGCTCCCATGCAGCAGTACAGCAACAGGCAGC GCGAGGATCGTTGTGTATAGTTGTCTCGTAGTCTACGCATCGAAACGATA TCACATTACTGCGCGACATGTTCAGTCCATCGCCGCTGTTCCTGTGGGCA GCTTTGTCCACCACATGCATACAAACACAGGAAAGTGTCTTTTGGATTCT GAAAAGTATAGAGTCTGGGTGTGAAGAAATGTCTCCACCCGAACCATTAA TCTGTCTCATCTCCGAACCCTGCCTACACTGTTGCTGCTACACAGCAGTG GCCGTGCTGCTGCAGCTTTTTCGTAACCGTTTTAGTTGCTGCTTAACAGC AACACACAGGAAGAAGTTGTGCTGCTGCGTTCTGACCCCTGAAGTGTTGA AATAAAATGTTCATTTGATGATGCAGTAACGTGACAGGACATGGTCGCCA GGAAAGTGAGAAAAGTGCCCAGTGGCAAGTTGTCGTGCAACCAAGGGTAC ACGTAGAAAAAAATTCCGGACACATAGGCCCAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12582:63..3945-

>mRNA_Ecto-sp13_S_contig12582.2134.1 ID=mRNA_Ecto-sp13_S_contig12582.2134.1|Name=mRNA_Ecto-sp13_S_contig12582.2134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1806bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12582:63..3945- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGGGAGAATATGTTGGAACAGTCGGCACCACCCTTCTTCTCGTCGG
GGAGTTCGTGGCCAAGGCGGGTGCCGCAGGCTCTGTTGACCCGATGATGC
ACATGATGCGAAACTTGTTCACCACCACTTACACCGATGGAGATGCCTGC
CCCGATGAAGATGATGCCTGCCTTGCGTCTTCCAGTTGCTTGGCTTGCAA
CGACGCCTACATGGCTGCTTTTTCGGATTGCGCGGCTTCGTTGACGAGCA
CCTCCACGTGCGATGACCTTGCCGAAGCCATGTGCTGTGCGGCGGAAGGC
TGCGAGGACAACGAGGAATTTGCCGACATCATGGGCTGCATTAATGGGGA
CCTTGGTTGCGGAGTCATCGACATCGGTGATTGTGCAGGAGGCGGGAGCC
CGGCTGTTTCCGGGTCCGACACCATGACGGACTCCACATCTACAACCGAG
ACCGACTGTCCTACCGAAATCTCGGCGTGTAACGCGGATTCGGAGTGCGT
AACATGCACCCAATCTTATGTTGACGCCGTGGAGGGATGCTTTGCTTCAG
CGACTGGGTCCACTTGCGACGATGTCGAAGACGCTGTGTGCTGTGCGGCG
GATGGCTGTGAGGACAACGAAGCGCTCAACGATCTCTTAACCTGCATCAA
TGCGGAATCTACATGCTCCATCGATATTGGAGATTGTGCAGCGGATGGCA
GCAGGGCCATTTCTGGCTCCAGCACCACCACCGACACGGATGGTACCGCC
ATCGATACTACCACCGACTCTCCCTATACCTCGATGACGACGAGCGAGAC
CGACTGCCCCACCGAAATCTCGGCGTGTAACGCGGATTCGGAGTGCGTAA
CATGCACCCAGTCGTATGTTGACGCCGTGGAGGGATGCTTTGCTTCAGCG
ACTGGGTCCACTTGCGACGATGTCGAAGAAGCTGTCTGCTGTGCGGCGGA
TGGCTGTGAGGACAACGAAGCGCTCAACGATCTCTTAACCTGCATCAATG
CGGAATCTACATGCTCCATCGATATTGGAGATTGTGCAGCGGATGGCAGC
AGGGCCATTTCTGGCTCCAGCACCACCACCGACACGGATGGTACCGCCAT
CGATACTACCACCGACTCTCCCTATACCTCGATGACGACGAGCGAGACCG
ACTGCCCCACCGAAATCTCGGCGTGTAACGCGGATTCGGAGTGCGTAACA
TGCACCCAGTCGTATGTTGACGCCGTGGAGGGATGCTTTGCTTCAGCGAC
TGGGTCCACTTGCGACGATGTCGAAGAAGCTGTCTGCTGTGCGGCGGATG
GCTGTGAGGACAACGAAGCGCTCAACGATCTCTTAACCTGCATCAATGCG
GAGTCTACATGCTCCATCGACATTGGAGATTGTGCAGCGGATGGCAGCAG
GGCCATTTCTGGCTCCAGCACCACCACCGACACTGATGGTACCGCCATCG
ATACTACCACCGACACCGATGGTACCGCCAGCGATACCACCACCGACACC
GAAGATACCGCCAGCGATACTACCACCGACACCGATGGTACCACCAGCGA
TAGTACTACCGAAACCGATGGTACCGCCAGCGATACTGTCACCGACACCG
ATGGTGCCGCCGCTGACGACGGCTACGACACCAGCGACCCCATCCCTTTC
CCAGTTGGAGACGACGAGAAAGATGAAGACTCTGATGCAGACGCGGACGC
GGCCAACGCCGAGTCATCAGCCACTTCCGCTGCGGCAATGGGAGGTTCCA
CGATTGTCTGGCTGATTGCCGCCGCTGCACCCGGCCTGTGGCGCCGGTTC
CAGTAA
back to top