prot_Ecto-sp13_S_contig96930.21328.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig96930.21328.1
Unique Nameprot_Ecto-sp13_S_contig96930.21328.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length46
Homology
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BLAST of mRNA_Ecto-sp13_S_contig96930.21328.1 vs. uniprot
Match: D8LF18_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF18_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.020e-16
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0 
Query:    7 RNKVASVKQTMDVNHLQLENLLYERDYLSRETQLCRDFT 45
            RNKVA+ KQTMDVNHLQLENLLYERDYLSRETQLCRDFT
Sbjct:   85 RNKVATAKQTMDVNHLQLENLLYERDYLSRETQLCRDFT 123
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig96930.21328.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LF18_ECTSI3.020e-1694.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019163THO complex, subunit 5PFAMPF09766FmiP_Thoc5coord: 6..45
e-value: 5.3E-13
score: 49.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig96930contigEcto-sp13_S_contig96930:360..497 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig96930.21328.1mRNA_Ecto-sp13_S_contig96930.21328.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig96930 360..497 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig96930.21328.1 ID=prot_Ecto-sp13_S_contig96930.21328.1|Name=mRNA_Ecto-sp13_S_contig96930.21328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
VAHLPCRNKVASVKQTMDVNHLQLENLLYERDYLSRETQLCRDFT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019163THO_Thoc5