mRNA_Ecto-sp13_S_contig96930.21328.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig96930.21328.1
Unique NamemRNA_Ecto-sp13_S_contig96930.21328.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig96930.21328.1 vs. uniprot
Match: D8LF18_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF18_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.020e-16
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:   19 RNKVASVKQTMDVNHLQLENLLYERDYLSRETQLCRDFT 135
            RNKVA+ KQTMDVNHLQLENLLYERDYLSRETQLCRDFT
Sbjct:   85 RNKVATAKQTMDVNHLQLENLLYERDYLSRETQLCRDFT 123
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig96930.21328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LF18_ECTSI3.020e-1694.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig96930contigEcto-sp13_S_contig96930:360..497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score80.1
Seed ortholog evalue3e-13
Seed eggNOG ortholog2880.D8LF18
Preferred nameTHOC5
Model size138
KEGG koko:K05291,ko:K13174
KEGG Pathwayko00563,ko01100,ko03013,map00563,map01100,map03013
KEGG ModuleM00405,M00406
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000346,GO:0000347,GO:0000445,GO:0000902,GO:0001701,GO:0001824,GO:0002376,GO:0002520,GO:0002521,GO:0002573,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0007049,GO:0007140,GO:0007275,GO:0007276,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010793,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0017145,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030097,GO:0030099,GO:0030154,GO:0030224,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031503,GO:0031974,GO:0031981,GO:0031990,GO:0032239,GO:0032386,GO:0032501,GO:0032502,GO:0032504,GO:0032784,GO:0032786,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033036,GO:0033157,GO:0033554,GO:0034605,GO:0034613,GO:0034641,GO:0035162,GO:0042886,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044403,GO:0044417,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044766,GO:0045184,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045649,GO:0045650,GO:0045787,GO:0045893,GO:0045935,GO:0046483,GO:0046784,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048232,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048568,GO:0048583,GO:0048585,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051028,GO:0051049,GO:0051093,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051301,GO:0051302,GO:0051321,GO:0051641,GO:0051649,GO:0051701,GO:0051704,GO:0051716,GO:0051726,GO:0051836,GO:0060215,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090304,GO:0097159,GO:0140013,GO:1901360,GO:1901363,GO:1901976,GO:1901977,GO:1902105,GO:1902106,GO:1902579,GO:1902680,GO:1903046,GO:1903131,GO:1903506,GO:1903508,GO:1903706,GO:1903707,GO:1903827,GO:2000001,GO:2000002,GO:2000026,GO:2000035,GO:2000112,GO:2000197,GO:2001020,GO:2001021,GO:2001141
Exons1
EggNOG free text desc.positive regulation of DNA-templated transcription, elongation
EggNOG OGsKOG2216@1,KOG2216@2759
Cds size138
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464232.8907435-CDS-Ecto-sp13_S_contig96930:359..4971681464232.8907435-CDS-Ecto-sp13_S_contig96930:359..497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig96930 360..497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig96930.21328.1prot_Ecto-sp13_S_contig96930.21328.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig96930 360..497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig96930.21328.1

>prot_Ecto-sp13_S_contig96930.21328.1 ID=prot_Ecto-sp13_S_contig96930.21328.1|Name=mRNA_Ecto-sp13_S_contig96930.21328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
VAHLPCRNKVASVKQTMDVNHLQLENLLYERDYLSRETQLCRDFT*
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mRNA from alignment at Ecto-sp13_S_contig96930:360..497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig96930.21328.1 ID=mRNA_Ecto-sp13_S_contig96930.21328.1|Name=mRNA_Ecto-sp13_S_contig96930.21328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96930:360..497+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCGCACTTGCCTTGCAGGAACAAGGTGGCCTCCGTCAAGCAGACCAT
GGACGTGAACCACCTGCAGCTGGAGAACTTGCTGTACGAGAGGGACTACC
TCTCTCGGGAGACGCAGCTCTGCAGAGACTTCACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig96930:360..497+

>mRNA_Ecto-sp13_S_contig96930.21328.1 ID=mRNA_Ecto-sp13_S_contig96930.21328.1|Name=mRNA_Ecto-sp13_S_contig96930.21328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96930:360..497+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCGCACTTGCCTTGCAGGAACAAGGTGGCCTCCGTCAAGCAGACCAT
GGACGTGAACCACCTGCAGCTGGAGAACTTGCTGTACGAGAGGGACTACC
TCTCTCGGGAGACGCAGCTCTGCAGAGACTTCACGTGA
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