mRNA_Ecto-sp13_S_contig12571.2131.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12571.2131.1
Unique NamemRNA_Ecto-sp13_S_contig12571.2131.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12571.2131.1 vs. uniprot
Match: D7FSA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA8_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 1.700e-87
Identity = 130/146 (89.04%), Postives = 138/146 (94.52%), Query Frame = 1 
Query:  319 MIEAIDEKEWCSDLRGAVMLHLASESGFMLASAADINKGKTERESRKVSYKSSAFHLILPFMAYFKDLRLTELKSDEHSLLTVVGQMWGAYDEDRGITCAEIDKEVPVFLPPMKCTTYRAVREAMHTNLVSALQVVTNRYTDGDGN 756
            M+ AIDE EWCSDLRGAVML LASESGFMLAS ADI+KGKTERESRKVSYKSSAFHLILPFMAYFKDLRLTE+K DEHSLLT+VG MWGAYDE+RGI+CAE+DKEVPVFLPPMKCTTYR  REAMHTNLVSALQVVTNRYTDG+GN
Sbjct:    1 MLRAIDENEWCSDLRGAVMLRLASESGFMLASRADIDKGKTERESRKVSYKSSAFHLILPFMAYFKDLRLTEIKCDEHSLLTMVGHMWGAYDEERGISCAEMDKEVPVFLPPMKCTTYRVAREAMHTNLVSALQVVTNRYTDGNGN 146
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BLAST of mRNA_Ecto-sp13_S_contig12571.2131.1 vs. uniprot
Match: D7FUP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP5_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 3.990e-40
Identity = 76/148 (51.35%), Postives = 97/148 (65.54%), Query Frame = 1 
Query:  226 ENVDPRQGVRDVVEE-----TTRNAYAKSTPEAADAMIEAIDEKEWCSDLRGAVMLHLASESGFMLASAADINKGKTERESRKVSYKSSAFHLILPFMAYFKDLRLTELKSDEHSLLTVVGQMWGAYDEDRGITCAEIDKEVPVFLPP 654
            ENVDPRQ V D+VE      T++ A A S PEAADAM++A+   EWC  LR  V+  LA + G M AS +D  K   E E++K ++KS+AFHLILPFMAYFK + LT +   EHSLL +VG +WG +D +R IT  E+ KEV V   P
Sbjct:   70 ENVDPRQAVADLVESKLRKATSKQAVASSIPEAADAMLDAMHVMEWCPALRSTVLCRLAKDEGLMFASQSDFGKANAEPENKKTAFKSAAFHLILPFMAYFKGICLTTIDCREHSLLKIVGNLWGEWDPERPITQTELSKEVAVSSRP 217
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BLAST of mRNA_Ecto-sp13_S_contig12571.2131.1 vs. uniprot
Match: A0A6H5JCS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS8_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 4.360e-33
Identity = 61/117 (52.14%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:  403 MLASAADINKGKTERESRKVSYKSSAFHLILPFMAYFKDLRLTELKSDEHSLLTVVGQMWGAYDEDRGITCAEIDKEVPVFLPPMKCTTYRAVREAMHTNLVSALQVVTNRYTDGDG 753
            M AS +D+ K K E E++K ++KS+AFHLILPFMAYFK + LT +   EHSLL +VG MWG +D++R IT  E+ KEV VF+ PMK TT+R  R A+ T++++ L+ VT+ +T+ DG
Sbjct:    1 MFASQSDLGKAKAEPENKKTAFKSAAFHLILPFMAYFKGICLTTIDCREHSLLKMVGYMWGEWDQERPITQTELSKEVAVFVAPMKSTTWRVTRAALRTSMLAMLKKVTHDHTEDDG 117
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BLAST of mRNA_Ecto-sp13_S_contig12571.2131.1 vs. uniprot
Match: D7FZI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI3_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 4.810e-18
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:  319 MIEAIDEKEWCSDLRGAVMLHLASESGFMLASAADINKGKTERESRKV 462
            M+ AIDEKEWCSDLRGAVML LASESGFMLAS ADI+KGKTERESRKV
Sbjct:    1 MLRAIDEKEWCSDLRGAVMLRLASESGFMLASRADIDKGKTERESRKV 48
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BLAST of mRNA_Ecto-sp13_S_contig12571.2131.1 vs. uniprot
Match: A0A6H5K044_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K044_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.280e-16
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:  400 FMLASAADINKGKTERESRKVSYKSSAFHLILPFMAYFKDLRLTELKSDEHSLLTVVGQMWGAYDEDRGITCAEIDKE 633
               AS +DI K K E E++K ++KS+ FHLILPFMAYFK + LT +   EHSLL +VG +WG +D +R IT  E+  +
Sbjct:    4 LQFASQSDIGKAKVEPENKKTAFKSATFHLILPFMAYFKGICLTTIDCREHSLLKMVGYLWGEWDPERPITQTELSSK 81
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BLAST of mRNA_Ecto-sp13_S_contig12571.2131.1 vs. uniprot
Match: A0A6H5L3F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.180e-12
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:  319 MIEAIDEKEWCSDLRGAVMLHLASESGFMLASAADINKGKTER-ESRKVSYKSSAFHLILPFMAYFKDLRLTELKSDEHSLLTVVG 573
            M++A+   EWC  LR AV+  LA   G M+      +    +R + ++ ++KS+AFHLILPFMAYFK + LT +   EHSLL +VG
Sbjct:    1 MLDAMHVMEWCPALRSAVLCRLAKAKGVMVRDYTSKHPTNPKRWKEQEDAFKSAAFHLILPFMAYFKGVCLTTIDCSEHSLLKMVG 86
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BLAST of mRNA_Ecto-sp13_S_contig12571.2131.1 vs. uniprot
Match: D7FWX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX0_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 5.180e-12
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:  226 ENVDPRQGVRDVVEETTRNAYAKSTPEAADAMIEAIDEKEWCSDLRGAVMLHLASESGFM 405
            ENVDPRQ V D+VE T++ A A S PEAADAM++A++  EWC  LR  V+  LA + G M
Sbjct:    6 ENVDPRQAVADLVEATSKQAVASSIPEAADAMLDAMNVMEWCPALRSTVLCRLAKDEGLM 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12571.2131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FSA8_ECTSI1.700e-8789.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUP5_ECTSI3.990e-4051.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCS8_9PHAE4.360e-3352.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI3_ECTSI4.810e-1889.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K044_9PHAE1.280e-1650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3F5_9PHAE1.180e-1244.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWX0_ECTSI5.180e-1255.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12571contigEcto-sp13_S_contig12571:3..3511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size756
Hectar predicted targeting categoryother localisation
Exons4
Cds size756
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462670.6646428-CDS-Ecto-sp13_S_contig12571:2..1301681462670.6646428-CDS-Ecto-sp13_S_contig12571:2..130Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12571 3..130 -
1681462670.674933-CDS-Ecto-sp13_S_contig12571:313..5361681462670.674933-CDS-Ecto-sp13_S_contig12571:313..536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12571 314..536 -
1681462670.6860645-CDS-Ecto-sp13_S_contig12571:2590..27281681462670.6860645-CDS-Ecto-sp13_S_contig12571:2590..2728Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12571 2591..2728 -
1681462670.6971264-CDS-Ecto-sp13_S_contig12571:3244..35111681462670.6971264-CDS-Ecto-sp13_S_contig12571:3244..3511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12571 3245..3511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12571.2131.1prot_Ecto-sp13_S_contig12571.2131.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12571 3..3511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12571.2131.1

>prot_Ecto-sp13_S_contig12571.2131.1 ID=prot_Ecto-sp13_S_contig12571.2131.1|Name=mRNA_Ecto-sp13_S_contig12571.2131.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=252bp
MSNNGNNLLGSRSSNFSARNSLGGSSSSGASRSSSKRSGARHTSGSSSGM
SSGKKKQRNRRREVADAADDDDDDDENVDPRQGVRDVVEETTRNAYAKST
PEAADAMIEAIDEKEWCSDLRGAVMLHLASESGFMLASAADINKGKTERE
SRKVSYKSSAFHLILPFMAYFKDLRLTELKSDEHSLLTVVGQMWGAYDED
RGITCAEIDKEVPVFLPPMKCTTYRAVREAMHTNLVSALQVVTNRYTDGD
GN
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mRNA from alignment at Ecto-sp13_S_contig12571:3..3511-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12571.2131.1 ID=mRNA_Ecto-sp13_S_contig12571.2131.1|Name=mRNA_Ecto-sp13_S_contig12571.2131.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3509bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12571:3..3511- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCAACAACGGGAACAACCTTCTCGGGTCGAGGTCGTCCAACTTCTC
CGCCCGCAACAGCCTAGGAGGGTCGTCCTCGAGCGGTGCATCGCGCAGCA
GCTCGAAACGTTCTGGTGCTCGCCACACCTCCGGTTCTTCCTCCGGCATG
TCATCCGGCAAGAAGAAGCAGAGGAACCGCCGCCGGGAGGTCGCCGACGC
CGCCGACGATGACGACGACGACGACGAGAACGTCGACCCCCGTCAGGGGG
TCAGAGATGTAGTCGAGGTGAGAACCCGGGCGATGGACGACGTGTCCCGC
ATGGCCGCGGGCTGCTGCTGTAGTGTTGCTTCAAGTGCGCTACGGCTGTG
CTTTTCTGCGCATTTGCTGGGGGTCGCACACTTCCTGTAAGTTTCATGAG
CCTCGACAAGCCTCGATGCCTGACATCTCTCGTGCTGGCGTGTTGTTCAG
ACAGCACACCACCGATCCTCCTACTGACGGCAACGAGCATGCTCTATGCG
TTACCTGCTCCCGTGTTCCCCCTCCTCGTTTCCCAACCAGTAGCATCTGG
CGCCTCCGCGTCCACAAAATAATATTGTTTGTTGGCATTGGTTGGCACAG
AGAGTAACTGCTGTGTATTTCATGTGACAACCCCAGTACCGCTTAACCAC
GACGACTTGTATTTTGTCCACGTAAACCACATATACTCTACCGGCTGTTG
CGTGGCTCATAAGGCACATATTTATCATCCATCCCTCCACCCACTCGCCG
CGGGATACATGTCCATCCACTTGCCTGTCGAAGGAGACGACGAGGAACGC
ATATGCCAAGTCAACTCCCGAGGCCGCTGATGCCATGATCGAGGCCATTG
ACGAGAAAGAATGGTGCTCGGACCTACGCGGGGCGGTCATGCTGCACCTG
GCTTCAGAGTCGGGCTTTATGGTGAGAGATTCCCCCCTTCCCGCGCCAAC
TCTCACTAGTAGACACTCTTGTACTCCTGCTCTGAGCTGCATATTATCTC
CATCAACGAGGGCGGCCGTAGGCGCAGAGGTTCTTCTGTTGAGACATGGG
CGATACCAGTGTATGCAACGAAAAGTACTTGTCGTCAGAAAATTCAAGAC
CTGGACGGAGAAAAGGGCCACCACCTGTGACATGTTCGTCGCCACGGGGT
CCGATGTGCAGTTCGTGTGCGATGACACACACCGATAATGACCTGGCCGG
TGCATACGCTAGCTGCTTACAAGAACGAGAAGAACCGTGAAGTAAGTAGG
TGCCCACGCCCGTAACCTTCCGTCGCTTAACGACAACAATTGGAGTTGAA
CATCACACCATGGCAAATCAAGAGTTTTGTAATCTTATGTTTTTTTAAAT
AAATAGGCAAAGTCTAGTGTATATACGGCACAAGAGCATAATGGTTTTAC
TACTGTAAGGACGCACTACCCTTGTACGTACCGTAGACGGGTGCAAGTGA
GTCGCGCAACGTGACTATCCCAGCAGTCAATCTTGTCCGAGGGGGTTGGG
AGTGGGGGAGTCCCTGTGCTCCGTTGTTTTCATACGTACATAGTACAAGG
TTTCCTGTCGAGACGTGGGTGTTGAGCCTCCCGCGGGTGACCCAAGACCA
CATGCGCATTGTCCGAAGAGGGGCTGTGGGTCTTATTTGCGAAGTGCACT
CTATCACAAAGCCCGTGTTCCGCACAACATCGCGCGCGTACAGCAGTAGT
TATTCGGCATTGCCGCGAGGTCGAGCGGACAACAACTTGCCAGCGAAGAT
CGGACCTCTCGTCTGTCTTTGATTGATGATGGCAAATATACGACGAAGAA
ACCGAACTCTTTGAATCCGAAACAACGCGTCAACAGTTCACGAAATCGTC
AATCAAAGACAGACGAGAGGTCCGATCTTCGCTGGCAAGTTGTTGTCCGC
TCGAGCTGCCTGCAATGCCGAACACTTGGCCCGTTGCGAAGTGTAAGTTG
AGCAAAATAAACAGAGGTGCTACATGGAGCTGTCATTTTTGATAGGTTTC
GGAACTGGTTCGCCAGGCTTTGTCTGCGTGAACGCGCCCCGGGGAGATAG
GGGCAAATTGTCGCAGCTGATTTGTCAACCAAACACGCCACGTAGGCCTA
CCAACCTCCGGGTTAGAGCGTTAATGTGCCGACGAGCCTCTTGCGTGCCC
ATCATAAGGACTCGCGAGGAAAGACTCGATGTCGCGAGAAGAAATGCCGA
CGCATGCAATACGACCGAATTCACATGCACGATGTCCGGAGGTGGTGCCC
TGACCCCCCCCCCCCCCCCCCGCTCGAACGATGTGCAACGGGGGTATGCG
GGTGTTCCGTCCCATACATGCTACGGGTCTGCATGCGGCGAAAGGCAGAC
ACAGCCGCGTGAGATTCAAACGCGTGCATCAGCAGCAGTAGTTGGGAATG
TTGGGAATGCGTGTGGCTGTGATGTAGCCGTGTACCCCGTTGTACGCTTC
GTGTAGATCACAGCAGTTCTGTTGTGGGCCGGGCCCAGCAGTACGCGTTG
CACGCTGGGTAACACCACCCGCAGGGCTTGCTTGATTCACCGCACACGTA
TCTAGTTTGCTTGATCCACCACACGTATCCGGGGGGGGGGGGGGGGGGGG
GGGAGAGCCTTTTCATTGTTTTTTTCTTTTTTTCCATAAGTTTGTGTTTT
TTTTTCTCTAATTTTTTTTTATATAAANNNNNNNNNNCCCCCCCCCGGGT
TTGCTTCCTTCCTCCCCCTCACTTTTTTTTTTTTCCCCCCCCCGCCCGGG
GGGGGGGGGGGGGGGGGGGGGGGAGGGGAGAGACCTTTCACTCGGTTGTT
CCTTACTTGCATCAAGTCGTAGTTTGCTTGGTCCTAAGTATGCTGTCATC
AAGAACACGCCTTGGACGGAGAAAAAGGCCACCAGCAGTTTAACCTTGTG
TCAGGCGGCAGATGGCACACACCAGTAATTATCTAGTCGAGCCCACTAAC
GCCCCGCCGCTTTCGTTTGGCTCAGCTCGCTAGTGCCGCGGACATCAACA
AGGGGAAGACCGAGCGGGAGTCCCGGAAGGTGTCGTACAAAAGCTCCGCC
TTTCACCTTATCCTGCCATTTATGGCATACTTTAAGGATCTACGCCTGAC
GGAACTCAAGTCCGACGAACACAGCCTGCTGACGGTGGTGGGGCAGATGT
GGGGTGCATATGACGAAGATCGAGGAATTACATGTGCAGAAATAGACAGT
GAGTTATTGCTTTCTCGGCCGTGATTCCGGCCCCGTGTGAATCTCGCACA
TGTGTTTCGCCGCCTCCCTGACCTGTTCCCCCTCACTCTCGAGATTTTCC
AGTACGCGCGTCAACACCGCTCATCCCCCTTGTCCTCCCACCCACCCCCT
CCTATATGGTGTTTGGCTTCGTTGAATACAGAGGAAGTCCCCGTATTCCT
GCCGCCGATGAAGTGCACCACGTACCGTGCTGTGCGTGAGGCAATGCACA
CCAACCTGGTGTCCGCTCTCCAGGTGGTTACCAACAGGTACACGGACGGT
GACGGCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12571:3..3511-

>mRNA_Ecto-sp13_S_contig12571.2131.1 ID=mRNA_Ecto-sp13_S_contig12571.2131.1|Name=mRNA_Ecto-sp13_S_contig12571.2131.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12571:3..3511- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCAACAACGGGAACAACCTTCTCGGGTCGAGGTCGTCCAACTTCTC
CGCCCGCAACAGCCTAGGAGGGTCGTCCTCGAGCGGTGCATCGCGCAGCA
GCTCGAAACGTTCTGGTGCTCGCCACACCTCCGGTTCTTCCTCCGGCATG
TCATCCGGCAAGAAGAAGCAGAGGAACCGCCGCCGGGAGGTCGCCGACGC
CGCCGACGATGACGACGACGACGACGAGAACGTCGACCCCCGTCAGGGGG
TCAGAGATGTAGTCGAGGAGACGACGAGGAACGCATATGCCAAGTCAACT
CCCGAGGCCGCTGATGCCATGATCGAGGCCATTGACGAGAAAGAATGGTG
CTCGGACCTACGCGGGGCGGTCATGCTGCACCTGGCTTCAGAGTCGGGCT
TTATGCTCGCTAGTGCCGCGGACATCAACAAGGGGAAGACCGAGCGGGAG
TCCCGGAAGGTGTCGTACAAAAGCTCCGCCTTTCACCTTATCCTGCCATT
TATGGCATACTTTAAGGATCTACGCCTGACGGAACTCAAGTCCGACGAAC
ACAGCCTGCTGACGGTGGTGGGGCAGATGTGGGGTGCATATGACGAAGAT
CGAGGAATTACATGTGCAGAAATAGACAAGGAAGTCCCCGTATTCCTGCC
GCCGATGAAGTGCACCACGTACCGTGCTGTGCGTGAGGCAATGCACACCA
ACCTGGTGTCCGCTCTCCAGGTGGTTACCAACAGGTACACGGACGGTGAC
GGCAAC
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