prot_Ecto-sp13_S_contig12570.2130.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12570.2130.1
Unique Nameprot_Ecto-sp13_S_contig12570.2130.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length439
Homology
BLAST of mRNA_Ecto-sp13_S_contig12570.2130.1 vs. uniprot
Match: D7FR65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR65_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 1.460e-48
Identity = 106/141 (75.18%), Postives = 108/141 (76.60%), Query Frame = 0
Query:    6 GPPASTLESAGTPPPARSFAPFFSSTTPRALRP-TTAADALLISTMSPGFQTPPKRNDGRVAVVNSSMDKENCGAGMDEIALGADN-AGGGVCSICLSPLKNSGSNRRQEQREVYTVMLCKHNFHRACLVENRGAGNVGCP 144
            GPPASTLESA TPP ARSF PFF STTPRALRP T+AAD L IST SPGFQTPPKR DGRVAVVNSS DKEN GAGM E A   DN  GGGVCSICLSPLKNSG+NRRQEQREVYTV LCK     A     RG G  G P
Sbjct:    5 GPPASTLESARTPPRARSFTPFFGSTTPRALRPATSAADTLSISTTSPGFQTPPKRKDGRVAVVNSSRDKENGGAGMGETAPEVDNEGGGGVCSICLSPLKNSGTNRRQEQREVYTVRLCKVGHKPA----QRGGGG-GAP 140          
BLAST of mRNA_Ecto-sp13_S_contig12570.2130.1 vs. uniprot
Match: A0A6H5JHS7_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHS7_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.140e-22
Identity = 71/165 (43.03%), Postives = 89/165 (53.94%), Query Frame = 0
Query:   20 PARSFAPFFSSTTPRALRPTTAADALLISTMSPGFQTPPKRNDG-RVAVVNSSM-----------DKENCGAGMDEIALGADNAGGGVCSICLSPLKN-SGSNRRQEQREVYTVMLCKHNFHRACLVENRGAGNVGCPCCRGPLEPGLTPEATAEEREQMARTLA 171
            P R   P  ++  P  L P +A  A         FQTP +++   R   ++SS            ++ + G G     L      GG C+ICLSPLK  SG+     ++EVYTV +C+H FHR CLVENR AGN GCP CRG LE GLTPEATA ER+  AR LA
Sbjct:   14 PTRPKTPGSATQGPVVLAPPSAVPATXXXXXXAVFQTPCRKDSAPRRCSISSSKGSCSVRKMANGERASVGDGEGRAELTTPACRGGSCAICLSPLKKPSGA-----KKEVYTVRVCQHMFHRVCLVENRRAGNTGCPYCRGDLERGLTPEATAAERK--ARVLA 171          
BLAST of mRNA_Ecto-sp13_S_contig12570.2130.1 vs. uniprot
Match: D7G207_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G207_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 3.940e-20
Identity = 57/118 (48.31%), Postives = 65/118 (55.08%), Query Frame = 0
Query:   94 GVCSICLSPLKNSGSN--RRQEQREVYTVMLCKHNFHRACLVENRGAGNVGCPCCRGPLEPGLTPEATAEEREQMARTLALIRRREXXXEALQVR--ARRAAGAVVAEARPVPTATAA 207
            G C ICL PL++S           EVY +  C H FHRACL ENR AGN+GCPCCRGPLE GLTP  TA ER   A   AL   R    ++  V   A R A  V++ A P P   AA
Sbjct:   31 GDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVISNAGPAPAVVAA 148          
BLAST of mRNA_Ecto-sp13_S_contig12570.2130.1 vs. uniprot
Match: A0A6H5L4L7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.550e-18
Identity = 46/81 (56.79%), Postives = 50/81 (61.73%), Query Frame = 0
Query:   94 GVCSICLSPLKNSGSN--RRQEQREVYTVMLCKHNFHRACLVENRGAGNVGCPCCRGPLEPGLTPEATAEEREQMARTLAL 172
            G C ICL PL++S           EVY +  C H FHRACL ENR AGN+GCPCCRGPLE GLTP  TA ER   A   AL
Sbjct:  206 GDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQAL 286          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12570.2130.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FR65_ECTSI1.460e-4875.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHS7_9PHAE2.140e-2243.03RING-type domain-containing protein n=2 Tax=Ectoca... [more]
D7G207_ECTSI3.940e-2048.31RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L4L7_9PHAE2.550e-1856.79RING-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 389..416
NoneNo IPR availableCOILSCoilCoilcoord: 299..319
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 89..152
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 96..146
e-value: 6.1E-6
score: 35.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 96..147
score: 10.97
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 93..195
e-value: 1.8E-9
score: 39.6
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 96..146
e-value: 3.5E-5
score: 23.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12570contigEcto-sp13_S_contig12570:1271..4540 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12570.2130.1mRNA_Ecto-sp13_S_contig12570.2130.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12570 1271..4540 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12570.2130.1 ID=prot_Ecto-sp13_S_contig12570.2130.1|Name=mRNA_Ecto-sp13_S_contig12570.2130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=439bp
MTHPAGPPASTLESAGTPPPARSFAPFFSSTTPRALRPTTAADALLISTM
SPGFQTPPKRNDGRVAVVNSSMDKENCGAGMDEIALGADNAGGGVCSICL
SPLKNSGSNRRQEQREVYTVMLCKHNFHRACLVENRGAGNVGCPCCRGPL
EPGLTPEATAEEREQMARTLALIRRREEEEEALQVRARRAAGAVVAEARP
VPTATAALLTRLEELNAAAGTPTTRAETRSVAEAGPVSVAALLGRLEELE
VAARTPTRPVAGQLEVRPTAARLVAAAAAVAAAAGARGAMSESESEEREE
EARRRAEAITASLAEARRAAMAAMAEATRTVAESESDLSVAAATVRRTRR
AAAAAPSESSSEFDGVVERARRSEANSRAAPLRLALAEMSAAEIALEAAR
VRKEEVELEAAQAASRALARAAAAAATAATAAAAQTAV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type