mRNA_Ecto-sp13_S_contig12570.2130.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12570.2130.1
Unique NamemRNA_Ecto-sp13_S_contig12570.2130.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12570.2130.1 vs. uniprot
Match: D7FR65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR65_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 1.460e-48
Identity = 106/141 (75.18%), Postives = 108/141 (76.60%), Query Frame = 1 
Query:   16 GPPASTLESAGTPPPARSFAPFFSSTTPRALRP-TTAADALLISTMSPGFQTPPKRNDGRVAVVNSSMDKENCGAGMDEIALGADN-AGGGVCSICLSPLKNSGSNRRQEQREVYTVMLCKHNFHRACLVENRGAGNVGCP 432
            GPPASTLESA TPP ARSF PFF STTPRALRP T+AAD L IST SPGFQTPPKR DGRVAVVNSS DKEN GAGM E A   DN  GGGVCSICLSPLKNSG+NRRQEQREVYTV LCK     A     RG G  G P
Sbjct:    5 GPPASTLESARTPPRARSFTPFFGSTTPRALRPATSAADTLSISTTSPGFQTPPKRKDGRVAVVNSSRDKENGGAGMGETAPEVDNEGGGGVCSICLSPLKNSGTNRRQEQREVYTVRLCKVGHKPA----QRGGGG-GAP 140
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BLAST of mRNA_Ecto-sp13_S_contig12570.2130.1 vs. uniprot
Match: A0A6H5JHS7_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHS7_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.140e-22
Identity = 71/165 (43.03%), Postives = 89/165 (53.94%), Query Frame = 1 
Query:   58 PARSFAPFFSSTTPRALRPTTAADALLISTMSPGFQTPPKRNDG-RVAVVNSSM-----------DKENCGAGMDEIALGADNAGGGVCSICLSPLKN-SGSNRRQEQREVYTVMLCKHNFHRACLVENRGAGNVGCPCCRGPLEPGLTPEATAEEREQMARTLA 513
            P R   P  ++  P  L P +A  A         FQTP +++   R   ++SS            ++ + G G     L      GG C+ICLSPLK  SG+     ++EVYTV +C+H FHR CLVENR AGN GCP CRG LE GLTPEATA ER+  AR LA
Sbjct:   14 PTRPKTPGSATQGPVVLAPPSAVPATXXXXXXAVFQTPCRKDSAPRRCSISSSKGSCSVRKMANGERASVGDGEGRAELTTPACRGGSCAICLSPLKKPSGA-----KKEVYTVRVCQHMFHRVCLVENRRAGNTGCPYCRGDLERGLTPEATAAERK--ARVLA 171
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BLAST of mRNA_Ecto-sp13_S_contig12570.2130.1 vs. uniprot
Match: D7G207_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G207_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 3.940e-20
Identity = 57/118 (48.31%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:  280 GVCSICLSPLKNSGSN--RRQEQREVYTVMLCKHNFHRACLVENRGAGNVGCPCCRGPLEPGLTPEATAEEREQMARTLALIRRREXXXEALQVR--ARRAAGAVVAEARPVPTATAA 621
            G C ICL PL++S           EVY +  C H FHRACL ENR AGN+GCPCCRGPLE GLTP  TA ER   A   AL   R    ++  V   A R A  V++ A P P   AA
Sbjct:   31 GDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVISNAGPAPAVVAA 148
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BLAST of mRNA_Ecto-sp13_S_contig12570.2130.1 vs. uniprot
Match: A0A6H5L4L7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.550e-18
Identity = 46/81 (56.79%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:  280 GVCSICLSPLKNSGSN--RRQEQREVYTVMLCKHNFHRACLVENRGAGNVGCPCCRGPLEPGLTPEATAEEREQMARTLAL 516
            G C ICL PL++S           EVY +  C H FHRACL ENR AGN+GCPCCRGPLE GLTP  TA ER   A   AL
Sbjct:  206 GDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQAL 286
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12570.2130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FR65_ECTSI1.460e-4875.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHS7_9PHAE2.140e-2243.03RING-type domain-containing protein n=2 Tax=Ectoca... [more]
D7G207_ECTSI3.940e-2048.31RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L4L7_9PHAE2.550e-1856.79RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12570contigEcto-sp13_S_contig12570:1271..4540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1317
Hectar predicted targeting categoryother localisation
Exons4
Cds size1317
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462670.5931456-CDS-Ecto-sp13_S_contig12570:1270..16421681462670.5931456-CDS-Ecto-sp13_S_contig12570:1270..1642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12570 1271..1642 -
1681462670.6044767-CDS-Ecto-sp13_S_contig12570:2220..26591681462670.6044767-CDS-Ecto-sp13_S_contig12570:2220..2659Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12570 2221..2659 -
1681462670.620619-CDS-Ecto-sp13_S_contig12570:3056..31901681462670.620619-CDS-Ecto-sp13_S_contig12570:3056..3190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12570 3057..3190 -
1681462670.6326573-CDS-Ecto-sp13_S_contig12570:4168..45401681462670.6326573-CDS-Ecto-sp13_S_contig12570:4168..4540Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12570 4169..4540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12570.2130.1prot_Ecto-sp13_S_contig12570.2130.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12570 1271..4540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12570.2130.1

>prot_Ecto-sp13_S_contig12570.2130.1 ID=prot_Ecto-sp13_S_contig12570.2130.1|Name=mRNA_Ecto-sp13_S_contig12570.2130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=439bp
MTHPAGPPASTLESAGTPPPARSFAPFFSSTTPRALRPTTAADALLISTM
SPGFQTPPKRNDGRVAVVNSSMDKENCGAGMDEIALGADNAGGGVCSICL
SPLKNSGSNRRQEQREVYTVMLCKHNFHRACLVENRGAGNVGCPCCRGPL
EPGLTPEATAEEREQMARTLALIRRREEEEEALQVRARRAAGAVVAEARP
VPTATAALLTRLEELNAAAGTPTTRAETRSVAEAGPVSVAALLGRLEELE
VAARTPTRPVAGQLEVRPTAARLVAAAAAVAAAAGARGAMSESESEEREE
EARRRAEAITASLAEARRAAMAAMAEATRTVAESESDLSVAAATVRRTRR
AAAAAPSESSSEFDGVVERARRSEANSRAAPLRLALAEMSAAEIALEAAR
VRKEEVELEAAQAASRALARAAAAAATAATAAAAQTAV*
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mRNA from alignment at Ecto-sp13_S_contig12570:1271..4540-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12570.2130.1 ID=mRNA_Ecto-sp13_S_contig12570.2130.1|Name=mRNA_Ecto-sp13_S_contig12570.2130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12570:1271..4540- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACACATCCCGCAGGCCCCCCAGCCAGCACGCTGGAGTCGGCGGGGAC
GCCTCCTCCCGCTCGCTCATTCGCGCCATTCTTCAGTAGCACCACGCCTC
GGGCACTGCGGCCTACAACGGCTGCTGATGCTCTTTTGATCTCGACAATG
AGCCCTGGCTTTCAGACGCCTCCAAAGAGAAATGATGGGCGTGTTGCAGT
GGTCAATAGCAGTATGGACAAGGAGAACTGCGGCGCTGGGATGGATGAAA
TCGCGCTGGGGGCGGACAACGCAGGAGGAGGTGTTTGCTCCATCTGCCTC
AGCCCGCTTAAGAATTCTGGCTCGAATCGGCGGCAGGAGCAGCGAGAGGT
GTACACTGTCATGCTCTGCAAGGTGATGAGCGCAGGGCTTAGCGGATGCG
GGGTCGGTGATACCTGGTTGTGCCTATAATAGAAACAGCAGAGGCGAGAG
AGGGGCGGCGGGCACATGGCAATTTGCTTTGACGCTACCAAAGTCGGCAT
GTTTTACACCAATACCTGGTGAACACATGACTTGTGCGAGTGAAGATATG
ACCACGTTCAGCAGAAGCAAACCTGCATGTTGACTATCGTTCGGTCCGAT
TTTGCGAACCTTGATAGAGGTTTGGGTTTTAATATTCGGCTTCTTCTCCC
AATCCCCTAGAGGCGTGCACGCACACACTTCAAGCTGCGGATGAGCAAAC
AGCACACAAGGGTGTTCCACCAGGTGTCAACCTTGAGTCCCTCCCTCCAG
TTGTCGTGCGCGCTGGCACCGGACCGCGGCCGTTGCTGTCTTGACACCTT
GACTTCTTCCCCGTCCGCATGCGTACACTTCACTCGTACCATCGGATGAG
CTTGAGATTAAGCCTTCATGGAGGGATACCGCCACCGCACCATAGCACCT
TCTTACCTGCATTCTCATACAGAAACTTTTTTCTGAGACGAAGTAATGAC
ACGTGTCACTGCTGTTGCCTTGTCCATGCCACCTCTCCCTGCGCAAGGCA
GAGCGTCCACTAGCCTGTTCCGTCGAGAACCACGACGCAGTATGGCCACT
GCCCGAAGAGGACCACCTCCCCTGCGCGTGCACTACTACTGCGCTGCCGG
CCTCTAGACGTATTTGACCGAGCAGATGTGCCATGGTACAGTAGTGGGCC
TTCAATATCGCCGGTCCGTGCCCGGCGAACCGATCGGTGCTTTTCAACAG
AACACAGTGACTTGTTGATGCAGTCTTGACTTGTTGATGCAGTCTGTGGC
CAGCAATTTCATCGGCGCTAATAGGGCCACCGGCGCAATTGTTGAGGCCC
CCTGACCGCAAGTATGTTCGTGATCGTTTTGCTGCCTCTTCGGCGCACAG
CACAACTTCCACCGAGCGTGCCTGGTCGAGAACCGTGGAGCGGGGAACGT
CGGCTGCCCTTGCTGCAGGGGACCCCTCGAACCCGGCCTGACGCCTGAGG
CGACTGCGGAGGAACGGGAACAGATGGCCAGGACGTGAGCGTGCTTGGCG
ATTGGTGCCCCCCTTGTTGCTGTCAAAATGTTGGTTCAGACCCCGACGCT
GTACGGTAGGCTCCTACGGTACGTAACGAAGGCAGTCTGCAGTTGCGCGT
ACGGACGTGGAAATGCGCTGGATCAATGGTGATGCAGTTGGGGGCGAGAG
GGGTGGGGAGGGTTGGCAGACACTGAGCGCTTGATCATGTCTATTTTGTC
CGTGTTCTCTTGGTGCCTGTTGATCGTGCCGCCCTCGACGTTTGCTGCGG
TTGTGTGACCTACGGGCAGCACTAAGACGAGGCAGCCCATGAGTACTTGC
ATATTGGCGTCCCACTTGCTACTAGCCTACATACCCCACCCTCGAACTCA
ACCACACCACTTGCCTCCGAAACCCTCTCAGATTGGCCCTGATCCGGCGC
AGAGAGGAGGAGGAGGAGGCGCTCCAGGTGAGGGCACGGCGGGCGGCCGG
AGCCGTAGTAGCCGAAGCCCGGCCGGTGCCGACGGCGACGGCCGCCTTGC
TGACACGGCTGGAGGAGCTCAACGCCGCGGCGGGGACGCCCACGACCCGG
GCCGAGACGCGCTCGGTAGCCGAGGCGGGGCCGGTATCGGTGGCCGCGCT
TTTGGGGCGCTTGGAGGAGCTCGAAGTGGCGGCGCGGACGCCCACGAGGC
CGGTGGCGGGCCAGCTGGAGGTGCGTCCGACGGCGGCACGGTTGGTTGCT
GCTGCTGCTGCGGTGGCGGCGGCGGCAGGGGCGCGCGGAGCGATGTCTGA
GAGTGAGAGCGAGGAAAGGGAGGAGGAGGCCCGTCGAAGAGCGGAAGCGA
TAACGGCAAGCTTGGCGGAGGTGAGAGAGAGAGCGAGAGAGGGGCAGAGG
GAAAAAGAGGCAAACAGAGAGATATGCATAGTCATCAATAGACACACATG
CAGACACACAGTAGGCAGAAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGACGCACAGAGAAAATAGATAAAAGAAATACAC
AGAGACGCGTACAGACAGAAAATAGACAGAAGCCAAGAGACTCTTGTCGG
GCGCAATAGAGCACTTGCGTATTCGCGGCATAACATGGTGCTGCCAGGGT
GTGACAGCCAAGGCTCGACATTGGGCATCCTGCGACGGAGCTTAGTGCAT
AAGGATAAGCCAACTCGGGCGTTTCACGGGCGATGGCACAAACTATTTGA
GAGCACAACCGGAGCGAATTCGCTCAGCACAGACCAGACACAAGCAAGGG
TAGTCTCCGATGGCAAGAGGTTTCCTCGTGTAAGGCCCCTCCATATTCGT
TAAGTCGACGCTATAAGCATCGCCTTGCTTGCGAACAGTGTACACGGAAG
TATGTGCGTGTGGTCCACGTGTTCAGCGCGGCTTTGTTTTTATCGCAGGC
CCGCCGGGCGGCAATGGCGGCGATGGCAGAGGCCACCAGAACAGTGGCGG
AGTCGGAGTCGGACCTATCGGTCGCCGCGGCAACCGTGCGCCGGACCAGG
CGGGCGGCGGCTGCAGCTCCCTCGGAAAGCTCGTCGGAGTTTGACGGAGT
GGTGGAGAGGGCAAGGCGGTCGGAGGCCAATAGCAGGGCGGCGCCGCTGA
GGCTGGCACTTGCCGAGATGTCGGCGGCTGAGATAGCTCTGGAGGCCGCG
AGAGTAAGGAAGGAGGAGGTGGAGCTCGAGGCCGCCCAGGCGGCCAGCCG
AGCGTTGGCGAGGGCGGCGGCAGCTGCGGCGACAGCGGCGACAGCAGCAG
CAGCACAGACGGCGGTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12570:1271..4540-

>mRNA_Ecto-sp13_S_contig12570.2130.1 ID=mRNA_Ecto-sp13_S_contig12570.2130.1|Name=mRNA_Ecto-sp13_S_contig12570.2130.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1317bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12570:1271..4540- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACACATCCCGCAGGCCCCCCAGCCAGCACGCTGGAGTCGGCGGGGAC
GCCTCCTCCCGCTCGCTCATTCGCGCCATTCTTCAGTAGCACCACGCCTC
GGGCACTGCGGCCTACAACGGCTGCTGATGCTCTTTTGATCTCGACAATG
AGCCCTGGCTTTCAGACGCCTCCAAAGAGAAATGATGGGCGTGTTGCAGT
GGTCAATAGCAGTATGGACAAGGAGAACTGCGGCGCTGGGATGGATGAAA
TCGCGCTGGGGGCGGACAACGCAGGAGGAGGTGTTTGCTCCATCTGCCTC
AGCCCGCTTAAGAATTCTGGCTCGAATCGGCGGCAGGAGCAGCGAGAGGT
GTACACTGTCATGCTCTGCAAGCACAACTTCCACCGAGCGTGCCTGGTCG
AGAACCGTGGAGCGGGGAACGTCGGCTGCCCTTGCTGCAGGGGACCCCTC
GAACCCGGCCTGACGCCTGAGGCGACTGCGGAGGAACGGGAACAGATGGC
CAGGACATTGGCCCTGATCCGGCGCAGAGAGGAGGAGGAGGAGGCGCTCC
AGGTGAGGGCACGGCGGGCGGCCGGAGCCGTAGTAGCCGAAGCCCGGCCG
GTGCCGACGGCGACGGCCGCCTTGCTGACACGGCTGGAGGAGCTCAACGC
CGCGGCGGGGACGCCCACGACCCGGGCCGAGACGCGCTCGGTAGCCGAGG
CGGGGCCGGTATCGGTGGCCGCGCTTTTGGGGCGCTTGGAGGAGCTCGAA
GTGGCGGCGCGGACGCCCACGAGGCCGGTGGCGGGCCAGCTGGAGGTGCG
TCCGACGGCGGCACGGTTGGTTGCTGCTGCTGCTGCGGTGGCGGCGGCGG
CAGGGGCGCGCGGAGCGATGTCTGAGAGTGAGAGCGAGGAAAGGGAGGAG
GAGGCCCGTCGAAGAGCGGAAGCGATAACGGCAAGCTTGGCGGAGGCCCG
CCGGGCGGCAATGGCGGCGATGGCAGAGGCCACCAGAACAGTGGCGGAGT
CGGAGTCGGACCTATCGGTCGCCGCGGCAACCGTGCGCCGGACCAGGCGG
GCGGCGGCTGCAGCTCCCTCGGAAAGCTCGTCGGAGTTTGACGGAGTGGT
GGAGAGGGCAAGGCGGTCGGAGGCCAATAGCAGGGCGGCGCCGCTGAGGC
TGGCACTTGCCGAGATGTCGGCGGCTGAGATAGCTCTGGAGGCCGCGAGA
GTAAGGAAGGAGGAGGTGGAGCTCGAGGCCGCCCAGGCGGCCAGCCGAGC
GTTGGCGAGGGCGGCGGCAGCTGCGGCGACAGCGGCGACAGCAGCAGCAG
CACAGACGGCGGTCTGA
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