prot_Ecto-sp13_S_contig96590.21289.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig96590.21289.1
Unique Nameprot_Ecto-sp13_S_contig96590.21289.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length79
Homology
BLAST of mRNA_Ecto-sp13_S_contig96590.21289.1 vs. uniprot
Match: D8LSD3_ECTSI (Cytochrome b561 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSD3_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.600e-20
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0
Query:   33 STGVWKMKAQYLPNHVFIGIFTYFAAAFTVLLGIQDKNSALGCGYDI 79
            ST  W MKAQYLPNHVFIGIFTYFAAAFT LLGIQDKNSALGCGYDI
Sbjct:  144 STPQW-MKAQYLPNHVFIGIFTYFAAAFTTLLGIQDKNSALGCGYDI 189          
BLAST of mRNA_Ecto-sp13_S_contig96590.21289.1 vs. uniprot
Match: A0A6U3NKH2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NKH2_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 6.420e-6
Identity = 28/79 (35.44%), Postives = 40/79 (50.63%), Query Frame = 0
Query:    1 VNAAVVITLTARFDIGTPCVRFMRPSCTPTFFSTGVWKMKAQYLPNHVFIGIFTYFAAAFTVLLGIQDKNSALGCGYDI 79
            +  AV+I  + +F  G           TP+        M+A  L  H ++G F Y A AFT+LLGIQ+K   +GCGY +
Sbjct:  181 IGIAVIILYSCQFIAGVMAFALDLKFITPS--------MRANLLLLHKYVGPFVYNATAFTILLGIQEKEGFIGCGYHV 251          
BLAST of mRNA_Ecto-sp13_S_contig96590.21289.1 vs. uniprot
Match: A0A7S2HJU2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HJU2_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 4.320e-5
Identity = 27/79 (34.18%), Postives = 39/79 (49.37%), Query Frame = 0
Query:    1 VNAAVVITLTARFDIGTPCVRFMRPSCTPTFFSTGVWKMKAQYLPNHVFIGIFTYFAAAFTVLLGIQDKNSALGCGYDI 79
            V  AV+I  + +F  G           TP+        M+A  L  H ++G F Y A A T++LGIQ+K   +GCGY +
Sbjct:  191 VGIAVIILYSCQFIAGVMAFALDMEFITPS--------MRANLLLLHKYVGPFVYNATALTIMLGIQEKEGFIGCGYKV 261          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig96590.21289.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSD3_ECTSI3.600e-2091.49Cytochrome b561 domain-containing protein n=2 Tax=... [more]
A0A6U3NKH2_9STRA6.420e-635.44Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2HJU2_9STRA4.320e-534.18Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.120.1770coord: 20..79
e-value: 7.1E-8
score: 33.9
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..46
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 67..79
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 47..66
NoneNo IPR availableTMHMMTMhelixcoord: 44..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig96590contigEcto-sp13_S_contig96590:74..310 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig96590.21289.1mRNA_Ecto-sp13_S_contig96590.21289.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig96590 74..310 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig96590.21289.1 ID=prot_Ecto-sp13_S_contig96590.21289.1|Name=mRNA_Ecto-sp13_S_contig96590.21289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
VNAAVVITLTARFDIGTPCVRFMRPSCTPTFFSTGVWKMKAQYLPNHVFI
GIFTYFAAAFTVLLGIQDKNSALGCGYDI
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