mRNA_Ecto-sp13_S_contig12568.2126.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12568.2126.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI) HSP 1 Score: 289 bits (740), Expect = 5.470e-93 Identity = 176/206 (85.44%), Postives = 187/206 (90.78%), Query Frame = 1
Query: 1 YSYGHQDGLWEYNTMHNCGQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISGSGSACIAIFESFGIEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRAIWMYLGSDEVEASAATDGMCTGNLFQNNYLERADTGVALAETRDTMLIGNTFIDTENNEWRDSDGL 618
YSYGHQDGLWEYNTM N G YGFDPHDDSDNLRIHNNIVYENGNHGIIASKR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++GSGSACIAIFESFGIEISDN+CTDNEEGIRLSMGSSYNKIFDNQVIDTAGR++W+YLGSDE+ ASAATDGMCTGNLFQNNYL+ A GV +ETRD MLIGNT + E + DSDGL
Sbjct: 257 YSYGHQDGLWEYNTMRNSGYYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTGSGSACIAIFESFGIEISDNVCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRSLWLYLGSDEIIASAATDGMCTGNLFQNNYLDGASIGVKFSETRDNMLIGNTMVGVEESLIDDSDGL 462
BLAST of mRNA_Ecto-sp13_S_contig12568.2126.1 vs. uniprot
Match: D7G1G2_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G2_ECTSI) HSP 1 Score: 282 bits (722), Expect = 4.730e-92 Identity = 170/187 (90.91%), Postives = 176/187 (94.12%), Query Frame = 1
Query: 58 QYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISGSGSACIAIFESFGIEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRAIWMYLGSDEVEASAATDGMCTGNLFQNNYLERADTGVALAETRDTMLIGNTFIDTENNEWRDSDGL 618
QYGFDPHDDSDNLRIHNNIVYENGNHGIIASKR XXXXXXXXXXXXXXXXXXXXXXXXXXXX SGSGSACIAIFESF IEISDNLCT NEEGIRLSMGSSYNKIFDNQVIDTAGR+IWMYLGSDEVEASAATDGMCTGNLFQNNYLE ++TGVA+ ETRDTMLIGNTFIDT+NNEW+DSDGL
Sbjct: 137 QYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRCNDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDIEISDNLCTQNEEGIRLSMGSSYNKIFDNQVIDTAGRSIWMYLGSDEVEASAATDGMCTGNLFQNNYLEGSETGVAMTETRDTMLIGNTFIDTDNNEWKDSDGL 323
BLAST of mRNA_Ecto-sp13_S_contig12568.2126.1 vs. uniprot
Match: A0A6H5LHR7_9PHAE (MEP7d protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHR7_9PHAE) HSP 1 Score: 222 bits (565), Expect = 6.400e-70 Identity = 136/178 (76.40%), Postives = 140/178 (78.65%), Query Frame = 1
Query: 127 GNHGIIASKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISGSGSACIAIFESFGIEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGR------------------AIWMYLGSDEVEASAATDGMCTGNLFQNNYLERADTGVALAETRDTMLIGNTFIDTENNEWRD 606
GNHGIIASKR XXXXXXXXXXXXXXXXX SGSGSACIAIFESF IEISDNLCT+NEEGIRLSMGSSYNKIFDNQVIDTAGR AIWMYLGSDEVEASAATDGMCTGNLFQNNYLER+DTGV+L ETRDTMLIGNTFIDT+NNEWRD
Sbjct: 21 GNHGIIASKRCNDVSIQNNVVYDNALXXXXXXXXXXXXXXXXXXXSGSGSACIAIFESFDIEISDNLCTNNEEGIRLSMGSSYNKIFDNQVIDTAGREFCYHIMPQCGWLTYPRGAIWMYLGSDEVEASAATDGMCTGNLFQNNYLERSDTGVSLTETRDTMLIGNTFIDTDNNEWRD 198
BLAST of mRNA_Ecto-sp13_S_contig12568.2126.1 vs. uniprot
Match: A0A6H5L0I1_9PHAE (MEP7a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I1_9PHAE) HSP 1 Score: 180 bits (456), Expect = 2.160e-54 Identity = 99/164 (60.37%), Postives = 107/164 (65.24%), Query Frame = 1
Query: 127 GNHGIIASKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISGSGSACIAIFESFGIEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRAIWMYLGSDEVEASAATDGMCTGNLFQNNYLERADTGVALAETRDTMLIGNTFIDTENNEWRDSDGL 618
GNHGIIASKR T+SGSGSACIAIFESFGIEISDN+CTDNEEGIRLS+GSSYNKIFDNQVIDTAG E+ ASAATDGMCTGNLFQNNYL+ A GV AETRDTM+IGNT + + DSDGL
Sbjct: 10 GNHGIIASKRCNDVSIQNNVVYDNALHGIMLHRSSDDGIIRNNTVSGSGSACIAIFESFGIEISDNVCTDNEEGIRLSLGSSYNKIFDNQVIDTAGH---------EIIASAATDGMCTGNLFQNNYLDGASIGVRFAETRDTMVIGNTMVALGGSLIDDSDGL 164
BLAST of mRNA_Ecto-sp13_S_contig12568.2126.1 vs. uniprot
Match: A0A6H5K9I9_9PHAE (MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I9_9PHAE) HSP 1 Score: 132 bits (332), Expect = 1.000e-32 Identity = 109/203 (53.69%), Postives = 134/203 (66.01%), Query Frame = 1
Query: 1 YSYGHQDGLWEYNTMHNCGQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISGSGSACIAIFESFGIEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRAIWMYLGSDEVEASAATDGMCTGNLFQNNYLERADTGVALAETRDTMLIGNTFIDTENNEWRDS 609
Y+YGHQDGLWEYN MH +YGFDPHDDSDNLRIHNNIV+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AIFES + S+N CTDN+ G R S+G+S+NKI+DN+V D+ I+MY GSD S DG+ + N+ NN ++ A G+ + +T GN +T + +R+S
Sbjct: 261 YTYGHQDGLWEYNLMHENAKYGFDPHDDSDNLRIHNNIVWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIFESMEGDYSNNKCTDNKYGFRWSVGASHNKIYDNEVYDSQQYGIYMYEGSDLPYVS---DGLPSYNIIANNIIDTATEGIKMGDTVGNEFTGNVITNTADLRFRNS 460
BLAST of mRNA_Ecto-sp13_S_contig12568.2126.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 124 bits (310), Expect = 3.920e-29 Identity = 78/205 (38.05%), Postives = 102/205 (49.76%), Query Frame = 1
Query: 1 YSYGHQDGLWEYNTMHNCGQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TISGSGSACIAIFESFGIEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRAIWMYLGSDEVEASAATDGMCTGNLFQNNYLERADTGVALAETRDTMLIGNTFIDTENNEWRDS 609
YSYGHQ G+W N MH+ QYGFDPHDDSD L I N VY N NHGIIASKR TI+ A IA+ ESF +I N+ + GIR+S+GS N+++ N D + ++ Y GSDE + S DG +GN+ N +E GV + E D NTFI+ + E+ +S
Sbjct: 651 YSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS---DGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPES 852
BLAST of mRNA_Ecto-sp13_S_contig12568.2126.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 119 bits (297), Expect = 5.290e-28 Identity = 76/205 (37.07%), Postives = 100/205 (48.78%), Query Frame = 1
Query: 1 YSYGHQDGLWEYNTMHNCGQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TISGSGSACIAIFESFGIEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRAIWMYLGSDEVEASAATDGMCTGNLFQNNYLERADTGVALAETRDTMLIGNTFIDTENNEWRDS 609
YS+GHQ G+W N MH+ QYGFDPHDDSD L I N VY N NHGIIASKR TI+ G A IA+ E+ G +I DN E GIR+ +GSS NK+ DN + ++ Y+GSDE G N F NN ++ +TGV + E+ + + N F T E+ ++
Sbjct: 211 YSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGG---GRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTTEIEFNNA 412
BLAST of mRNA_Ecto-sp13_S_contig12568.2126.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE) HSP 1 Score: 115 bits (288), Expect = 1.770e-27 Identity = 79/205 (38.54%), Postives = 108/205 (52.68%), Query Frame = 1
Query: 1 YSYGHQDGLWEYNTMHNCGQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT--ISGSGSACIAIFESFGIEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRAIWMYLGSDEVEASAATDGMCTGNLFQNNYLERADTGVALAETRDTMLIGNTFIDTENNEWRDS 609
Y+YGH+ G W N MH+ +YGFDPHDDSD L IH+N VY NGNHGIIASKR XXXXXXXXXX +G A +A+ ESF ++S+N DN+ G+R+S+G + N N + D++ ++ Y GSD+ G N+F +N + D + L T I NTF + + D+
Sbjct: 87 YTYGHEQGDWRRNKMHHNREYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNYXXDNGDAGMALMESFNADVSNNKFEDNKYGVRMSVGCADNVFSKNVISDSSEYNVYTYEGSDD--PWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKSAKTVRFEDA 289
BLAST of mRNA_Ecto-sp13_S_contig12568.2126.1 vs. uniprot
Match: A0A6H5K1D5_9PHAE (MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D5_9PHAE) HSP 1 Score: 114 bits (284), Expect = 3.710e-27 Identity = 68/196 (34.69%), Postives = 96/196 (48.98%), Query Frame = 1
Query: 1 YSYGHQDGLWEYNTMHNCGQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT--ISGSGSACIAIFESFGIEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRAIWMYLGSDEVEASAATDGMCTGNLFQNNYLERADTGVALAETRDTMLIGNTFID 582
Y+YGHQ G W N +H+ YG+DPHDDSD L IH+N+VY+N HGIIASKR G+G A +A+ ES EIS N+ N+ GIR+S+G N +++N + +T+ AI+ Y GSD E G N+F +N + + L E+ T + N F +
Sbjct: 53 YTYGHQQGDWRRNVVHSNSGYGYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVYNNTMTNTSQYAIYTYQGSDPAEVQPT--GRSQDNIFDSNTVVGGPQAIKLKESDGTRITNNVFYE 246
BLAST of mRNA_Ecto-sp13_S_contig12568.2126.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI) HSP 1 Score: 118 bits (295), Expect = 4.010e-27 Identity = 75/201 (37.31%), Postives = 97/201 (48.26%), Query Frame = 1
Query: 1 YSYGHQDGLWEYNTMHNCGQYGFDPHDDSDNLRIHNNIVYENGNHGIIASKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TISGSGSACIAIFESFGIEISDNLCTDNEEGIRLSMGSSYNKIFDNQVIDTAGRAIWMYLGSDEVEASAATDGMCTGNLFQNNYLERADTGVALAETRDTMLIGNTFIDTENNE 597
YS+GH G+W N MH+ QYGFDPHDDSDNL I N V+ NGNHGIIASKR T+ A +AI ES G I DN T+ + GIRLS+G+S N + +N+ + I+ Y G+DE EAS DG+ N F N +E GV + + N F + + E
Sbjct: 667 YSFGHDGGIWTGNQMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWENTVYDMEDAGMAIMESMGAHIYDNTFTNVKYGIRLSVGASRNVVENNKFSECDQYGIYTYQGNDEPEASKDWDGLLVDNTFHANTVEG---GVKIQKAEGIAFTDNKFYEHSSGE 864 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12568.2126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12568.2126.1 >prot_Ecto-sp13_S_contig12568.2126.1 ID=prot_Ecto-sp13_S_contig12568.2126.1|Name=mRNA_Ecto-sp13_S_contig12568.2126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=206bp YSYGHQDGLWEYNTMHNCGQYGFDPHDDSDNLRIHNNIVYENGNHGIIASback to top mRNA from alignment at Ecto-sp13_S_contig12568:337..4791+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12568.2126.1 ID=mRNA_Ecto-sp13_S_contig12568.2126.1|Name=mRNA_Ecto-sp13_S_contig12568.2126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4455bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12568:337..4791+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12568:337..4791+ >mRNA_Ecto-sp13_S_contig12568.2126.1 ID=mRNA_Ecto-sp13_S_contig12568.2126.1|Name=mRNA_Ecto-sp13_S_contig12568.2126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12568:337..4791+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |