mRNA_Ecto-sp13_S_contig12561.2121.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12561.2121.1
Unique NamemRNA_Ecto-sp13_S_contig12561.2121.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12561.2121.1 vs. uniprot
Match: A0A6H5K3N2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3N2_9PHAE)

HSP 1 Score: 484 bits (1245), Expect = 2.300e-166
Identity = 286/326 (87.73%), Postives = 289/326 (88.65%), Query Frame = 1 
Query:    1 MNAPSARGGNGHVVFESTRIAEELVRGGVPPGSIIADFASWDTVGNAWFARMAVEAMLDMSFRHGDRANEHAAPPXXXXXXXPAASVAPSVLSPRKLPYPGSAVVAESGGAGEGESETAAAVGGVEEPGLFSARREAAAAGARGLTLKETKRADAAXXXXXXXXXXXXXXXXGNDGGEKLPAARAGEAYGGGEMRKWMYDWKNKKARARRGPMNLTVFVSDFHAERMDAVFQWVFGLEPSLLRGKTTVTTVSIETPVEMWARGGEQREARQAHEREAAEQARQRAREIRTVEEFRAFMMLGGHRGYFNLTHGRYQASSGGGWGGAS 978
            MNAPSARGGNGHV+FESTRIAEELVR                         MAVEAMLDMSFRHGDRANEHAAPPXXXX   PAA VAPSVLSPRKLPYPGSAVV ESGG GEGESETAAA+GGVEEPGLFSARREAAAA ARGLTLKETKRADA XXXXXXXXXXXXXXXX   GGEKLPAARAGEAYGGGEMRKWMYDWKNKKARARRGPMNLTVFVSDFHAERMDAVFQWVFGLEPSLLRGKTTVTTVSIETPVEMWARGGEQREARQAHEREAAEQARQRAREIRTVEEFRAFMMLGGHRGYF+LTHGRYQAS GGGWGGAS
Sbjct:  123 MNAPSARGGNGHVIFESTRIAEELVR-------------------------MAVEAMLDMSFRHGDRANEHAAPPXXXXA--PAAGVAPSVLSPRKLPYPGSAVVTESGGTGEGESETAAALGGVEEPGLFSARREAAAAAARGLTLKETKRADAXXXXXXXXXXXXXXXXXRKGGGEKLPAARAGEAYGGGEMRKWMYDWKNKKARARRGPMNLTVFVSDFHAERMDAVFQWVFGLEPSLLRGKTTVTTVSIETPVEMWARGGEQREARQAHEREAAEQARQRAREIRTVEEFRAFMMLGGHRGYFDLTHGRYQASPGGGWGGAS 421
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BLAST of mRNA_Ecto-sp13_S_contig12561.2121.1 vs. uniprot
Match: A0A7S2RKG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKG7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 9.890e-13
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 MNAPSARGGNGHVVFESTRIAEELVRGGVPPGSIIADFASWDTVGNAWFARMAVEAML 174
            MNAPSAR  +G + FES+ IA+ LVR GVPP +II DF SWDTV NAW  R+ VEA++
Sbjct:  134 MNAPSARTESGAIWFESSAIAQHLVRAGVPPEAIICDFVSWDTVANAWVTRLVVEALV 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12561.2121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3N2_9PHAE2.300e-16687.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2RKG7_9STRA9.890e-1362.07Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12561contigEcto-sp13_S_contig12561:533..3430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1375
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_006430.1
Cds size981
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462669.837191-UTR-Ecto-sp13_S_contig12561:532..9261681462669.837191-UTR-Ecto-sp13_S_contig12561:532..926Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12561 533..926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462669.850385-CDS-Ecto-sp13_S_contig12561:926..11601681462669.850385-CDS-Ecto-sp13_S_contig12561:926..1160Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12561 927..1160 -
1681462669.8672376-CDS-Ecto-sp13_S_contig12561:2229..28991681462669.8672376-CDS-Ecto-sp13_S_contig12561:2229..2899Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12561 2230..2899 -
1681462669.87677-CDS-Ecto-sp13_S_contig12561:3353..34301681462669.87677-CDS-Ecto-sp13_S_contig12561:3353..3430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12561 3354..3430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12561.2121.1prot_Ecto-sp13_S_contig12561.2121.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12561 927..3430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12561.2121.1

>prot_Ecto-sp13_S_contig12561.2121.1 ID=prot_Ecto-sp13_S_contig12561.2121.1|Name=mRNA_Ecto-sp13_S_contig12561.2121.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=327bp
MNAPSARGGNGHVVFESTRIAEELVRGGVPPGSIIADFASWDTVGNAWFA
RMAVEAMLDMSFRHGDRANEHAAPPPPPPPPAPAASVAPSVLSPRKLPYP
GSAVVAESGGAGEGESETAAAVGGVEEPGLFSARREAAAAGARGLTLKET
KRADAAAAAAAAAAAKSGAGAGGNDGGEKLPAARAGEAYGGGEMRKWMYD
WKNKKARARRGPMNLTVFVSDFHAERMDAVFQWVFGLEPSLLRGKTTVTT
VSIETPVEMWARGGEQREARQAHEREAAEQARQRAREIRTVEEFRAFMML
GGHRGYFNLTHGRYQASSGGGWGGAS*
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mRNA from alignment at Ecto-sp13_S_contig12561:533..3430-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12561.2121.1 ID=mRNA_Ecto-sp13_S_contig12561.2121.1|Name=mRNA_Ecto-sp13_S_contig12561.2121.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2898bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12561:533..3430- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGCCCCCAGCGCTCGCGGCGGGAACGGGCACGTCGTCTTCGAGTC
GACGAGAATAGCGGAGGAACTCGTGCGGTGAGTCCGGCCATACGTCTGAT
TCTCTTCTGCGTCGCCGTCCCTCTCTGCGTAGATGTCCTGTGGTTGAGCT
CTTCGCTTTTGCGTCCCGCTCTGCTCGCCTGTGTTGAGAATGGTCTGGCT
TTTTTTTTAACACTTTTGGTTTGAATTCCTTGTTGTCGCCTTGCGCGTTG
TCCGCCCCGTCTGGGGAACAGTCTAGCCCGTGATGCTTGCTTACCCGTGT
TTGCTGGAGGGGACATGTTTCGCCTGCTGTGCTAGTACGACGGTAAGTTG
GTTGGTCTCTTCCACGTCTCTTTGTTTTGGTCGTTTCGGCAACCGGTCTG
CTTGGGCCGCCATCTCTCCGATGATGGTCGGACCTGCTGCATGCCACCAG
AATGTTGATGGTCAGAAGGTGGAGAATTGCTAGACACTAAACCCCCCGCT
CCCCTCACCCCCTGCCCCCGGCCTTTTGTAGAGGAGGCGTTCCTCCGGGG
AGCATCATCGCGGACTTCGCGAGCTGGGACACCGTGGGCAACGCGTGGTT
CGCCAGGATGGCGGTGGAAGCCATGCTGGACATGTCCTTCCGACACGGGG
ATCGCGCGAACGAGCACGCAGCGCCGCCGCCGCCGCCGCCGCCACCGGCC
CCCGCCGCCAGCGTCGCGCCGTCGGTACTGTCTCCGAGAAAGCTCCCCTA
CCCGGGCAGCGCGGTAGTAGCGGAGAGCGGCGGCGCAGGCGAAGGCGAGA
GCGAGACGGCAGCGGCGGTAGGCGGCGTCGAGGAGCCGGGACTCTTCTCG
GCGCGGAGGGAAGCGGCGGCGGCGGGGGCGAGAGGGCTAACGCTGAAGGA
GACTAAGAGGGCGGACGCGGCGGCGGCGGCGGCGGCGGCAGCGGCCGCGA
AGAGCGGGGCCGGTGCCGGCGGTAACGACGGGGGGGAGAAGCTGCCGGCG
GCGCGGGCCGGGGAGGCGTACGGGGGCGGAGAGATGAGGAAGTGGATGTA
CGACTGGAAGAATAAGAAGGCGAGGGCCCGCCGCGGTCCGATGAACCTCA
CGGTGTTTGTGTCGGACTTTCACGCCGAGAGGATGGACGCTGTCTTCCAG
TGGGTGTTCGGTCTGGAGCCGTCCCTTCTCAGGGGGAAGACTACGGTTAC
GGTGAGTGAGGAGATGACGAGCCACTCCCAAAGGAGCCGTTGGTATTGCT
GGGGCTACCCCCACACCGCAAGGGGAAAGGTGTGGCAATAATATTAAAAA
ACAATGAAAAAAGCTCCTGTGTGACGTTCCTCTTGTGTGACCCCCGCTGA
TATGTCAGATATATACTTGTACGCCGAAAGGCCTGTAGGCCGGCGCCAGA
ATAGATGGCACGAACAAACACACCCGGGTGGGGGGAAAGAAAGGAGGAAT
GCCCTCCCCTCTCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCCCGGCCGTACGCGGTGCAACTCCAGCTGGTGCCGGGTTGGCAG
TAGCAGCTATTGCATCTGAGGGTTGGTGTACGTGCCAAGCGTAACGCTCT
GTGTCAAAGCTGAGGAAGACGCAAGCACATGACGACTCCTCGCCGCCGCC
CTCTCCCTCGCAAACAGTTAACGTGCCCGTTAAAGTCACGCATGATACTC
CACACTGTTCGATTGATTTCCCCCCGGCACACACTCCCACCCTCCCTGCG
ATTTTTCCCTGAAAACGTTTTTCTCGCCGCCTTTTTTTCTCCTCCCGAAA
CACTGACCCGTAACGAGCAGACCGTGAGCATCGAGACGCCGGTAGAGATG
TGGGCCAGGGGAGGGGAGCAGAGAGAGGCCCGTCAAGCCCACGAGAGGGA
AGCGGCAGAACAGGCGCGCCAGCGGGCCCGGGAGATACGCACCGTCGAGG
AGTTCCGAGCTTTCATGATGCTAGGGGGGCACCGCGGATACTTCAACTTG
ACACACGGGCGGTACCAGGCTAGCTCCGGCGGGGGCTGGGGGGGGGCTTC
GTAATGCGCTTGAGTCTCGAAGCGGCGTGCGGCGTGGAAGAGGGACTTGT
GTTGCTTTTTTCTTGCCCTGGTTGCAGACCTAGGCTGCCGGCCTGCCGCG
CTGTGTTGTTGCTATTGTTTGTTGTCTTCACATGTGTGTGTGCGCGATAG
GGCTGCCACAAATGGCTGTCAGCGATAGTCCCCTCCTTTTTGATAGCGTG
AGAGAGGCGACAAAGTTCGTCACAAAACCGTTTCAGAACCAATCGCGCAG
TGCTAAGCGAACAGTGCCCCAGAGTGAGAAAACGTGCGAGTCACGCCTGT
CCTTACTTGCTGTGTGACCCCGGCTGGTTCTTCCAGAATTACACCAACAG
GGGGACCTCGGTAGTGCCGGATGAATAGTACCAATGCCCGGTATAGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12561:533..3430-

>mRNA_Ecto-sp13_S_contig12561.2121.1 ID=mRNA_Ecto-sp13_S_contig12561.2121.1|Name=mRNA_Ecto-sp13_S_contig12561.2121.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=981bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12561:533..3430- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGCCCCCAGCGCTCGCGGCGGGAACGGGCACGTCGTCTTCGAGTC
GACGAGAATAGCGGAGGAACTCGTGCGAGGAGGCGTTCCTCCGGGGAGCA
TCATCGCGGACTTCGCGAGCTGGGACACCGTGGGCAACGCGTGGTTCGCC
AGGATGGCGGTGGAAGCCATGCTGGACATGTCCTTCCGACACGGGGATCG
CGCGAACGAGCACGCAGCGCCGCCGCCGCCGCCGCCGCCACCGGCCCCCG
CCGCCAGCGTCGCGCCGTCGGTACTGTCTCCGAGAAAGCTCCCCTACCCG
GGCAGCGCGGTAGTAGCGGAGAGCGGCGGCGCAGGCGAAGGCGAGAGCGA
GACGGCAGCGGCGGTAGGCGGCGTCGAGGAGCCGGGACTCTTCTCGGCGC
GGAGGGAAGCGGCGGCGGCGGGGGCGAGAGGGCTAACGCTGAAGGAGACT
AAGAGGGCGGACGCGGCGGCGGCGGCGGCGGCGGCAGCGGCCGCGAAGAG
CGGGGCCGGTGCCGGCGGTAACGACGGGGGGGAGAAGCTGCCGGCGGCGC
GGGCCGGGGAGGCGTACGGGGGCGGAGAGATGAGGAAGTGGATGTACGAC
TGGAAGAATAAGAAGGCGAGGGCCCGCCGCGGTCCGATGAACCTCACGGT
GTTTGTGTCGGACTTTCACGCCGAGAGGATGGACGCTGTCTTCCAGTGGG
TGTTCGGTCTGGAGCCGTCCCTTCTCAGGGGGAAGACTACGGTTACGACC
GTGAGCATCGAGACGCCGGTAGAGATGTGGGCCAGGGGAGGGGAGCAGAG
AGAGGCCCGTCAAGCCCACGAGAGGGAAGCGGCAGAACAGGCGCGCCAGC
GGGCCCGGGAGATACGCACCGTCGAGGAGTTCCGAGCTTTCATGATGCTA
GGGGGGCACCGCGGATACTTCAACTTGACACACGGGCGGTACCAGGCTAG
CTCCGGCGGGGGCTGGGGGGGGGCTTCGTAA
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