mRNA_Ecto-sp13_S_contig101911.212.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig101911.212.1
Unique NamemRNA_Ecto-sp13_S_contig101911.212.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: D8LI65_ECTSI (Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI65_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.500e-23
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1
Query:   19 EHLDARLTDLGMEQCATLKAANHGIEKEAELVVVSPLTRAIQTAMLAIDQV 171
            EHLDARLTDLG EQCATLKAANHGIEKEAELVVVSPLTRAI+TAMLAIDQV
Sbjct:   56 EHLDARLTDLGKEQCATLKAANHGIEKEAELVVVSPLTRAIETAMLAIDQV 106          
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: D8LI64_ECTSI (Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI64_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.220e-19
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 1
Query:   19 EHLDARLTDLGMEQCATLKAANHGIEKEAELVVVSPLTRAIQTAMLAIDQV 171
            EHLDARLTDLG +QCATLKA  HGIEKEA+LVVVSPL RAIQTA L IDQV
Sbjct:   56 EHLDARLTDLGKQQCATLKATKHGIEKEAQLVVVSPLARAIQTATLTIDQV 106          
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: A0A835YRM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.340e-8
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1
Query:   25 LDARLTDLGMEQCATLKAANHGIEKEAELVVVSPLTRAIQTAMLAIDQV 171
            +DARLTDLG EQC TL+       +E +L+VVSP++RAI TAM+A D+V
Sbjct:   62 MDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKV 110          
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: A0A836CMC3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.140e-6
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   22 HLDARLTDLGMEQCATLKAANHGIEKEAELVVVSPLTRAIQTAMLAIDQV 171
            HLDARLTDLG EQ   L A       E +L+VVSP++RA++TA +A +QV
Sbjct:   66 HLDARLTDLGREQAQGLGATLGTTIDEIQLMVVSPMSRALETASIAFEQV 115          
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: A0A7S2RI44_9STRA (Hypothetical protein (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RI44_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.540e-5
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   10 RAQEHLDARLTDLGMEQCATLKAA----NHGIEKEAELVVVSPLTRAIQTAM 153
            R   +LDARLT+ G +QCA L AA    +  I   AELVV SPLTR IQTAM
Sbjct:  132 RCISNLDARLTNRGEKQCADLAAALQASSSSILDNAELVVTSPLTRCIQTAM 183          
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: A0A4D9DAJ2_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAJ2_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.480e-5
Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 1
Query:   25 LDARLTDLGMEQCATLKAANHGIEKEAELVVVSPLTRAIQTAMLAID 165
            LD  LT LG+ QC  LK +   I+   +LVV+SPL RA+ TA LA D
Sbjct:  107 LDPELTKLGVSQCLALKPSVEAIQSSIDLVVISPLRRALMTAALAFD 153          
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: A0A6T6L9S4_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6L9S4_9RHOD)

HSP 1 Score: 48.9 bits (115), Expect = 3.110e-5
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:   19 EHLDARLTDLGMEQCATLKAANHGIEKEAELVVVSPLTRAIQTAMLAIDQ 168
            EH+DARLTDLG EQ ++L  +  G+  E  L++VSPLTR +QTA LA  +
Sbjct:   75 EHVDARLTDLGREQASSL--SERGLVPE--LILVSPLTRTLQTATLAFPE 120          
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Match: A0A6S8KEJ6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8KEJ6_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 6.810e-5
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   10 RAQEHLDARLTDLGMEQCATLKAAN---------HGIEKEAELVVVSPLTRAIQTAM 153
            ++++++DARLT  G+EQC TL AA          H +    EL+V SP+TR IQTA+
Sbjct:  109 KSRDNIDARLTPTGIEQCRTLAAAIKNAPEGSPLHDVLNTTELIVTSPVTRCIQTAL 165          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101911.212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LI65_ECTSI1.500e-2396.08Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 ... [more]
D8LI64_ECTSI2.220e-1984.31Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835YRM9_9STRA8.340e-857.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CMC3_9STRA3.140e-654.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RI44_9STRA1.540e-557.69Hypothetical protein (Fragment) n=2 Tax=Eucampia a... [more]
A0A4D9DAJ2_9STRA2.480e-551.06Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A6T6L9S4_9RHOD3.110e-554.00Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A6S8KEJ6_9STRA6.810e-543.86Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig101911contigEcto-sp13_S_contig101911:37..210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score96.3
Seed ortholog evalue5.1e-18
Seed eggNOG ortholog2880.D8LI65
Model size174
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.isomerase activity
EggNOG OGsKOG4754@1,KOG4754@2759
Cds size174
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462513.5993557-CDS-Ecto-sp13_S_contig101911:36..2101681462513.5993557-CDS-Ecto-sp13_S_contig101911:36..210Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig101911 37..210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig101911.212.1prot_Ecto-sp13_S_contig101911.212.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig101911 37..210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig101911.212.1

>prot_Ecto-sp13_S_contig101911.212.1 ID=prot_Ecto-sp13_S_contig101911.212.1|Name=mRNA_Ecto-sp13_S_contig101911.212.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
LITRAQEHLDARLTDLGMEQCATLKAANHGIEKEAELVVVSPLTRAIQTA
MLAIDQV*
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mRNA from alignment at Ecto-sp13_S_contig101911:37..210-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig101911.212.1 ID=mRNA_Ecto-sp13_S_contig101911.212.1|Name=mRNA_Ecto-sp13_S_contig101911.212.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101911:37..210- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGATCACGCGCGCACAGGAGCACCTCGACGCCAGGCTGACCGATCTCGG CATGGAGCAGTGTGCGACTCTGAAGGCGGCGAATCACGGCATCGAAAAGG AGGCGGAGCTGGTCGTTGTTTCCCCGCTTACCAGAGCCATACAGACCGCC ATGTTGGCTATAGATCAGGTATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101911:37..210-

>mRNA_Ecto-sp13_S_contig101911.212.1 ID=mRNA_Ecto-sp13_S_contig101911.212.1|Name=mRNA_Ecto-sp13_S_contig101911.212.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101911:37..210- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGATCACGCGCGCACAGGAGCACCTCGACGCCAGGCTGACCGATCTCGG
CATGGAGCAGTGTGCGACTCTGAAGGCGGCGAATCACGGCATCGAAAAGG
AGGCGGAGCTGGTCGTTGTTTCCCCGCTTACCAGAGCCATACAGACCGCC
ATGTTGGCTATAGATCAGGTATGA
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